TCONS_00072357 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072357
Unique NameTCONS_00072357
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2615

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072357 ID=TCONS_00072357|Name=TCONS_00072357|organism=Clytia hemisphaerica|type=transcript|length=2615bp
ATGGAaaccaatgttttagttcgaattacagagagattcgaataatagag
gttcgaattagaaagagttGACTGTAGACATACTTCGAAAGAAGGTTTCA
GTGGAATGGAAACTAGTGGAATGGGGTCTGGGTACAAAAGTGGATTTTCA
AAGGAATTCTCCATGATATGTTTAGGGAATAGGGGAACGATTAATAAAGA
TCTTCATCAATAGGGGAATTAGATTCGATTCTGTAAACGATATGAATAAT
TGATTGAGGATTTGTTGGCTGAAGAATAAAGTCAATCAAATCGGTCCACT
ATGAATAATTacatcaaaaaataaagaattctaaaagtttaaaaaatatc
gattattttgaatttgaacatTATATAAAAGGTCAATTACatcatatcaa
aacaaaaaaggctgcattttaatttttccccCAAAAAAGACGGTAGAAAA
GTATATTCGAAACACAGCTCATGTTTCATGAAGGGTAAAACCTTTTTATT
GAACTGTAGggataaaaaacaaacacaaaaagaGGGGAAGGGAAGTTAAT
CAAAAATATAGTCCGGAAAAATAGAAAcaattttgagagaattttGATGG
GTTTAGATGTTGTGGTATGAGTATCTATGAGAGTATAGTGGAAGCAAGAC
AAGGCGGTGGTCACCaagcaacaacaacaataaaacCAAAGATGGCGGAC
ACAATGATGTTAAATTTCAGCAATCGATACAACAATACAAACGGGAGCAC
CAGTGGACAAACGCCAAGCAAATGCAATGGTAATGGAGAATGCCATCGAA
ACAAATTCAGTAAATATGAATCTCAAGatACCATTCCTCAAGGATCGTAT
AATGATATCACTTATGAGATTCCGAGTCCGACTCGCGTGTCACGCAGGAA
GAAGATCAAAGAACACACAGAGGAATTCATCGGTAACAGTACACTTCATG
GTTTTCATTACTGTTTCGACAAGCGATATCGTTTCCGAAGAATCATCTGG
ATTCTTGTGGTGATGGGTTCCATTGGAATGTTACTACAGAAATTGTTCGA
AGCTGGCCAAAAATATTTCGACCGTCCCTTCACCTCAACCAGTACCGTTA
TTAATCCGGAAAAGATGAAATTTCCAGCCGTTTCTCTGTGTAATATCAAT
GACTTCCGAATGTCTAAACTGGAAGGGACAACGTTCTTAAAGATCATGAA
AGGTGAACTACATTACAGCATTTTGAGTGGACCTGATTACGCAAACGCCT
CAAAACAAGCGAACCACAGACTTCAAAACATGTTGATGGATTGCACCGTT
AATTTCATGCAACAAAACAAATCTATAGCGAAATGTTCACCAGCAAACTT
CTCTACATTCTATCAATCACAAGGCGAAAAATGTTTCACTATAAACTCTG
GTAATGTCAACAGTCATTTTGCAGACCTGAGCGAGGGTGGACGAAAGAAA
TCGTTGGAAATGATTTTAGACTTGGAACATTAtgattattttgacaaaaa
tgatgTGGGAGTCAGGCTCATCATTCACGATCAAGATGAAACGCCCATTC
GCTTCAGCGGTGTCGCCCTTCCACCCGGCTTCACAAGTTACGTGGAAGTT
GGAAAAACTGAGACAATTAACTTGAAGAAACCGTACAAAACAGCATGTGA
TAGCAGAAAGTTGGATTACTTTTCTGTCTACTCTGAGAATGCTTGTTGGT
TGGAAAAGTTGACCAAATTCGTCACCAAGAAATGCCATTGCAAAGATGGC
TTCATGCCAGGAACAGAAAGAGTGTGTTCGGTCTCAGAATTGTTCAACTG
CACTTGGCCAAATTGGGAGGCTTTCAAGAGCATTCCCAAAGAAGAGGTCG
ACTGTCCTGTAGCCTGCAAAGTCACTGATTTCAACACCTTGATTTCGTAC
GCTCAATTCCCTTCGAACCGCATTGCTGACAGATATGCAGAACAGAAATT
CAAGTTGAAAGGAACAATCATGGAGAAACGAAAATTCGTCAGAGACAACC
TGCTTCGAATTGTGATTTACTACGAGAAGATGACATACAAAAGAATCACT
CAAGCGCCAAGTTATGATACCATGATATTGTTAGGGGACATCGGTGGCCA
GTTGGGCTTGTTTCTTGGCACCAGTATTTTGACTTACCTGGAGTTCTTCG
ATTACTTAGCCATGATAATCTACACAAAGTactttgaaatttataaaatc
AAGTAAAAGCCATAGTTATGGCAACGAGAAAACAAGAAAAGTCGTGTAAA
ATTATTCTCTCGCGTAAACTTTCCGCGATGGTATTCCAACATTGAGAAAC
GTGGCCGACcgaaattgaaaacaaatacaaaatacaaatacaaagaaata
tcatgaatttgagCGTAAGTGATGAGTTACAGTCATcatgaaaaatactt
tttgctCCTCCGTCCGAGgattattttttgtaaatacgatttttattgta
atttaTAGTAAGAAATGTAGCTATCGAGTATTTTTTCTTAGATTACACAT
ATAATAAAATgcacttttgtaaaatattttagaaGCAAATACGAGAAAAA
ATAACCTACCTGCTTTTCGGTAACACGTGGCAAGCATTAAATGCCATTTC
ACTTCTTGCGGTCTA
Run BLAST on NCBI

protein sequence of TCONS_00072357-protein

>TCONS_00072357-protein ID=TCONS_00072357-protein|Name=TCONS_00072357-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp
MSIYESIVEARQGGGHQATTTIKPKMADTMMLNFSNRYNNTNGSTSGQTP
SKCNGNGECHRNKFSKYESQDTIPQGSYNDITYEIPSPTRVSRRKKIKEH
TEEFIGNSTLHGFHYCFDKRYRFRRIIWILVVMGSIGMLLQKLFEAGQKY
FDRPFTSTSTVINPEKMKFPAVSLCNINDFRMSKLEGTTFLKIMKGELHY
SILSGPDYANASKQANHRLQNMLMDCTVNFMQQNKSIAKCSPANFSTFYQ
SQGEKCFTINSGNVNSHFADLSEGGRKKSLEMILDLEHYDYFDKNDVGVR
LIIHDQDETPIRFSGVALPPGFTSYVEVGKTETINLKKPYKTACDSRKLD
YFSVYSENACWLEKLTKFVTKKCHCKDGFMPGTERVCSVSELFNCTWPNW
EAFKSIPKEEVDCPVACKVTDFNTLISYAQFPSNRIADRYAEQKFKLKGT
IMEKRKFVRDNLLRIVIYYEKMTYKRITQAPSYDTMILLGDIGGQLGLFL
GTSILTYLEFFDYLAMIIYTKYFEIYKIK
Run BLAST on NCBI

transcript from alignment at scaffold_77:142017..146886+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072357 ID=TCONS_00072357|Name=TCONS_00072357|organism=Clytia hemisphaerica|type=transcript|length=4870bp|location=Sequence derived from alignment at scaffold_77:142017..146886+ (Clytia hemisphaerica)
ATGGAaaccaatgttttagttcgaattacagagagattcgaataatagag
gttcgaattagaaagagttGACTGTAGACATACTTCGAAAGAAGGTTTCA
GTGGAATGGAAACTAGTGGAATGGGGTCTGGGTACAAAAGTGGATTTTCA
AAGGAATTCTCCATGATATGTTTAGGGAATAGGGGAACGATTAATAAAGA
TCTTCATCAATAGGGGAATTAGATTCGATTCTGTAAACGATATGAATAAT
TGATTGAGGATTTGTTGGCTGAAGAATAAAGTCAATCAAATCGGTCCACT
ATGAATAATTacatcaaaaaataaagaattctaaaagtttaaaaaatatc
gattattttgaatttgaacatTATATAAAAGGTCAATTACatcatatcaa
aacaaaaaaggctgcattttaatttttccccCAAAAAAGACGGTAGAAAA
GTATATTCGAAACACAGCTCATGTTTCATGAAGGGTAAAACCTTTTTATT
GAACTGTAGggataaaaaacaaacacaaaaagaGGGGAAGGGAAGTTAAT
CAAAAATATAGTCCGGAAAAATAGAAAcaattttgagagaattttGATGG
GTTTAGATGTTGTGGTATGAGTATCTATGAGAGTATAGTGGAAGCAAGAC
AAGGCGGTGGTCACCaagcaacaacaacaataaaacCAAAGATGGCGGAC
ACAATGATGTTAAATTTCAGCAATCGATACAACAATACAAACGGGAGCAC
CAGTGGACAAACGCCAAGCAAATGCAATGGTAATGGAGAATGCCATCGAA
ACAAATTCAGTAAATATGAATCTCAAGGTGGGTGGTTAAACACTTCAAAC
GCCCTTTCATAATTAATTGGGTGGTTAAACACTTCACACGCCCTATATAA
CTAATTGGGTGGTTAATCACTTCACACGCCCTTTCATAATGAATTAGATG
GTTAAACACTTCACACGCCCTTTTATAATGAATTGGGTGGTTAAACACTT
CACACGCCCTTTCATAATGAATTAGATGGTTAAACACTTCACGCGCCCTT
TTATAATGAATTGGGTGGTTAAACACTTCACACGCCCTTTTATAATTGAT
TGGGTGGTTAAACACTTCACACGCCCTTTTATAACTAATTGGGTGGTTAA
ACACTTCACACGCCCTTTTATAATTAATTGGGTGGTTAAACACTTCACAC
GCCCTTTTATAATGAATTGGGTGGTTAATCACTTCACACGCCCTATATAA
TTAATTGGGTGGTTAAACACTTCACACGCCCTTTCATAATTAATACCTGA
TATTCATTACGGAAGCACCAAAAAAAGACCGGGTGTTTACCGATAATTCC
GAATTTAAACGATAACACTATTGGCAAACACCCGGGCTCCGTATAAAAGA
ATACGTaataaatatcatgaattgggtGGTAAAACACTTCACTCTATAAA
AATGACCGGCTCTGGCAGTTTTTAAATAATCATTGTTTTTGTATATTAGT
TTCTGATTTTAATAATCAAATTCATcatcttgttttttttagatACCATT
CCTCAAGGATCGTATAATGGTAAGCAATATCGAtccattttgtcaaattt
tactTTTGACAAATTAATTACATGCAAGCAGGGAAAAGTCGAATTTAGCT
GCTAAACTactgaaaacattttcattttgagttaAAAGggctaaatttca
attttgtgtAGATATTCCCTGATTTATAAGAATTAATCTTTAGATATCAC
TTATGAGATTCCGAGTCCGACTCGCGTGTCACGCAGGAAGAAGATCAAAG
AACACACAGAGGAATTCATCGGTAACAGTACACTTCATGGTTTTCATTAC
TGTTTCGACAAGCGATATCGTTTCCGAAGAATCATCTGGATTCTTGTGGT
GATGGGTTCCATTGGAATGTTACTACAGAAATTGTTCGAAGCTGGCCAAA
AATATTTCGACCGTCCCTTCACCTCAACCAGTACCGTTATTAATCCGGAA
AAGATGAAATTTCCAGCCGTTTCTCTGTGTAATATCAATGACTTCCGAAT
GTCTAAACTGGAAGGGACAACGTTCTTAAAGATCATGAAAGGTGAACTAC
ATTACAGCATTTTGAGTGGACCTGATTACGCAAACGCCTCAAAACAAGCG
AACCACAGACTTCAAAACATGTTGATGGATTGCACCGTTAATTTCATGCA
ACAAAACAAATCTATAGCGAAATGTTCACCAGCAAACTTCTCTACATTCT
ATCAATCACAAGGCGAAAAATGTTTCACTATAAACTCTGGTAATGTCAAC
AGTCATTTTGCAGACCTGAGCGAGGGTGGACGAAAGAAATCGTTGGAAAT
GATTTTAGACTTGGAACATTAtgattattttgacaaaaatgatgTGGGAG
TCAGGCTCATCATTCACGATCAAGATGAAACGCCCATTCGCTTCAGCGGT
GTCGCCCTTCCACCCGGCTTCACAAGTTACGTGGAAGTTGGAAAAACTGA
GGTAAGAACAAACTTGACCAGAAGATGAGTGAATTTTTAGGAGGTTTGTA
GAAAATCTTGTGCGAAAGAATCActctttctctttcttttttcttcctGA
AATCTTGGAagaaagaaggagaagaaagaaggagaagaaagaaggagaag
aagaaggaaatAGAGAGTTTTACTCTATAACCAATGTGCAATGAATTTAA
CACAAATCCCATCTGACCATATTCTTCTTTCTTCCAGACAATTAACTTGA
AGAAACCGTACAAAACAGCATGTGATAGCAGAAAGTTGGATTACTTTTCT
GTCTACTCTGAGAATGCTTGTTGGTTGGAAAAGTTGACCAAATTCGTCAC
CAAGAAATGCCATTGCAAAGATGGCTTCATGCCAGGTGAGTGAATCAATG
AAATCGAGAATAATTACTTCAAATATAATTTTACACATGTTTTGCCATTC
CAGGACGGTAATCAATTTGATAAAAAGTGCAAAGCTCAAAAAAGCTAATT
ATGCCTGGTGATGTTAAGTATCTTGgcaacaatatttttgaaaaaatagg
ctcaaagtaatttcattcattCCAAAAAGTGGGGTAATATTATAAATCTT
AAAACTACGGCTAGATAATGACTCGGATCAGCTTCTTCACAATGTAGATT
TTGAAATGTGAAATTTGATCTTCTCATTTTTCTTTAACAGGAACAGAAAG
AGTGTGTTCGGTCTCAGAATTGTTCAACTGCACTTGGCCAAATTGGGGTA
agtgaatgatttttttctggagTAGAAAAATGGTACAAGAGAGACACCAA
TGTGAAGGGTGTGTGAAGGGTGTGTAAACAGTGAAAATCTACCTTATTGG
AAATAATTTTCGTGCGAGCTAATGtttgcggtcgaaaaaaaaatttgcat
ttcacggtttttaattttcgcggttttgcccttttttggacaaatttcct
ttattttcccagggatttttcaaatttttcgataaagtTGGAAAACATTG
GAAAAAGTTGTATTTCACGGGTTCAAATTTTCGCGGTTtgccaaaaaatc
acaaaaacgctaaaattaattcccgcgaaaattagtcccaataagggaaT
TGTTTAGCCAATCAAAACTTAATTAATGACGACTGTCACAGGAAAACTGA
CTCTCTGATAAGAATAAATTCGATCCAACATGAAAGAACTATCATTTCAT
TTTACAGAGGCTTTCAAGAGCATTCCCAAAGAAGAGGTCGACTGTCCTGT
AGCCTGCAAAGTCACTGATTTCAACACCTTGATTTCGTACGCTCAATTCC
CTTCGAACCGCATTGCTGACAGATATGCAGAACAGAAATTCAAGTTGAAA
GGAACAATCATGGAGAAACGAAAATTCGTCAGGTAAGACATCAAAgctct
tttttcaaaaaaagaagcgGCTTCCATTTTTCATATGATTATATGGTTAT
GAGTACTATGCTCCTTCGCCTTGTAGAGCACTCTATAAAGCATCACTTAT
AACCTTCTACACATAtcctttattttgaaatttaacatTCGAATTTCCTT
ACTGCAGAGACAACCTGCTTCGAATTGTGATTTACTACGAGAAGATGACA
TACAAAAGAATCACTCAAGCGCCAAGTTATGATACCATGATATTGTTAGG
TAAGTTCTATAGAgaatagcaaaaaaaatataaagaaatgcCTCATGTTt
aagattcaaaaattttcaaaggattCTTTAAAATGGGCTGGTAAAAACGG
AAACTTTTACATTTCACTCAACATTCTGAAGAAATATAAACTTTCAGAAA
GTCCTAAAAGATCAGTATTACTTCATCTTTTATTTTCAGGGGACATCGGT
GGCCAGTTGGGCTTGTTTCTTGGCACCAGTATTTTGACTTACCTGGAGTT
CTTCGATTACTTAGCCATGATAATCTACACAAAGTactttgaaatttata
aaatcAAGTAAAAGCCATAGTTATGGCAACGAGAAAACAAGAAAAGTCGT
GTAAAATTATTCTCTCGCGTAAACTTTCCGCGATGGTATTCCAACATTGA
GAAACGTGGCCGACcgaaattgaaaacaaatacaaaatacaaatacaaag
aaatatcatgaatttgagCGTAAGTGATGAGTTACAGTCATcatgaaaaa
tactttttgctCCTCCGTCCGAGgattattttttgtaaatacgattttta
ttgtaatttaTAGTAAGAAATGTAGCTATCGAGTATTTTTTCTTAGATTA
CACATATAATAAAATgcacttttgtaaaatattttagaaGCAAATACGAG
AAAAAATAACCTACCTGCTTTTCGGTAACACGTGGCAAGCATTAAATGCC
ATTTCACTTCTTGCGGTCTA

Coding sequence (CDS) from alignment at scaffold_77:142017..146886+

>TCONS_00072357 ID=TCONS_00072357|Name=TCONS_00072357|organism=Clytia hemisphaerica|type=CDS|length=1590bp|location=Sequence derived from alignment at scaffold_77:142017..146886+ (Clytia hemisphaerica)
ATGAGTATCTATGAGAGTATAGTGGAAGCAAGACAAGGCGGTGGTCACCa
agcaacaacaacaataaaacCAAAGATGGCGGACACAATGATGTTAAATT
TCAGCAATCGATACAACAATACAAACGGGAGCACCAGTGGACAAACGCCA
AGCAAATGCAATGGTAATGGAGAATGCCATCGAAACAAATTCAGTAAATA
TGAATCTCAAGatACCATTCCTCAAGGATCGTATAATGATATCACTTATG
AGATTCCGAGTCCGACTCGCGTGTCACGCAGGAAGAAGATCAAAGAACAC
ACAGAGGAATTCATCGGTAACAGTACACTTCATGGTTTTCATTACTGTTT
CGACAAGCGATATCGTTTCCGAAGAATCATCTGGATTCTTGTGGTGATGG
GTTCCATTGGAATGTTACTACAGAAATTGTTCGAAGCTGGCCAAAAATAT
TTCGACCGTCCCTTCACCTCAACCAGTACCGTTATTAATCCGGAAAAGAT
GAAATTTCCAGCCGTTTCTCTGTGTAATATCAATGACTTCCGAATGTCTA
AACTGGAAGGGACAACGTTCTTAAAGATCATGAAAGGTGAACTACATTAC
AGCATTTTGAGTGGACCTGATTACGCAAACGCCTCAAAACAAGCGAACCA
CAGACTTCAAAACATGTTGATGGATTGCACCGTTAATTTCATGCAACAAA
ACAAATCTATAGCGAAATGTTCACCAGCAAACTTCTCTACATTCTATCAA
TCACAAGGCGAAAAATGTTTCACTATAAACTCTGGTAATGTCAACAGTCA
TTTTGCAGACCTGAGCGAGGGTGGACGAAAGAAATCGTTGGAAATGATTT
TAGACTTGGAACATTAtgattattttgacaaaaatgatgTGGGAGTCAGG
CTCATCATTCACGATCAAGATGAAACGCCCATTCGCTTCAGCGGTGTCGC
CCTTCCACCCGGCTTCACAAGTTACGTGGAAGTTGGAAAAACTGAGACAA
TTAACTTGAAGAAACCGTACAAAACAGCATGTGATAGCAGAAAGTTGGAT
TACTTTTCTGTCTACTCTGAGAATGCTTGTTGGTTGGAAAAGTTGACCAA
ATTCGTCACCAAGAAATGCCATTGCAAAGATGGCTTCATGCCAGGAACAG
AAAGAGTGTGTTCGGTCTCAGAATTGTTCAACTGCACTTGGCCAAATTGG
GAGGCTTTCAAGAGCATTCCCAAAGAAGAGGTCGACTGTCCTGTAGCCTG
CAAAGTCACTGATTTCAACACCTTGATTTCGTACGCTCAATTCCCTTCGA
ACCGCATTGCTGACAGATATGCAGAACAGAAATTCAAGTTGAAAGGAACA
ATCATGGAGAAACGAAAATTCGTCAGAGACAACCTGCTTCGAATTGTGAT
TTACTACGAGAAGATGACATACAAAAGAATCACTCAAGCGCCAAGTTATG
ATACCATGATATTGTTAGGGGACATCGGTGGCCAGTTGGGCTTGTTTCTT
GGCACCAGTATTTTGACTTACCTGGAGTTCTTCGATTACTTAGCCATGAT
AATCTACACAAAGTactttgaaatttataaaatcAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044930XLOC_044930Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072357-exon-scaffold_77-1491911889:142017..142843TCONS_00072357-exon-scaffold_77-1491911889:142017..142843Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1510915933:142017..142843TCONS_00072357-exon-scaffold_77-1510915933:142017..142843Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1575043694:142017..142843TCONS_00072357-exon-scaffold_77-1575043694:142017..142843Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1491911889:143559..143585TCONS_00072357-exon-scaffold_77-1491911889:143559..143585Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1510915933:143559..143585TCONS_00072357-exon-scaffold_77-1510915933:143559..143585Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1575043694:143559..143585TCONS_00072357-exon-scaffold_77-1575043694:143559..143585Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1491911889:143760..144517TCONS_00072357-exon-scaffold_77-1491911889:143760..144517Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1510915933:143760..144517TCONS_00072357-exon-scaffold_77-1510915933:143760..144517Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1575043694:143760..144517TCONS_00072357-exon-scaffold_77-1575043694:143760..144517Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1491911889:144754..144901TCONS_00072357-exon-scaffold_77-1491911889:144754..144901Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1510915933:144754..144901TCONS_00072357-exon-scaffold_77-1510915933:144754..144901Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1575043694:144754..144901TCONS_00072357-exon-scaffold_77-1575043694:144754..144901Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1491911889:145207..145263TCONS_00072357-exon-scaffold_77-1491911889:145207..145263Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1510915933:145207..145263TCONS_00072357-exon-scaffold_77-1510915933:145207..145263Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1575043694:145207..145263TCONS_00072357-exon-scaffold_77-1575043694:145207..145263Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1491911889:145724..145898TCONS_00072357-exon-scaffold_77-1491911889:145724..145898Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1510915933:145724..145898TCONS_00072357-exon-scaffold_77-1510915933:145724..145898Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1575043694:145724..145898TCONS_00072357-exon-scaffold_77-1575043694:145724..145898Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1491911889:146074..146165TCONS_00072357-exon-scaffold_77-1491911889:146074..146165Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1510915933:146074..146165TCONS_00072357-exon-scaffold_77-1510915933:146074..146165Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1575043694:146074..146165TCONS_00072357-exon-scaffold_77-1575043694:146074..146165Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1491911889:146356..146886TCONS_00072357-exon-scaffold_77-1491911889:146356..146886Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1510915933:146356..146886TCONS_00072357-exon-scaffold_77-1510915933:146356..146886Clytia hemisphaericaexon
TCONS_00072357-exon-scaffold_77-1575043694:146356..146886TCONS_00072357-exon-scaffold_77-1575043694:146356..146886Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072357-proteinTCONS_00072357-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:142017..146886 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.42912	1.49109	2.09943	3.13017	0.656211	0.424265	0.66352	0.993886	0.908367	0.956565	0.869855	0.778021	1.71017	1.28629	0.092454	0.406056	0.642892	1.05772	2.74827	3.29717	1.37104	1.59768	11.1533	11.1707	6.8076	9.45253	1.25868	1.21625	0.442559	0.318149
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001873ENaC
Vocabulary: Biological Process
TermDefinition
GO:0006814sodium ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005272sodium channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006814 sodium ion transport
cellular_component GO:0016020 membrane
molecular_function GO:0005272 sodium channel activity
Blast
[Close]
BLAST of TCONS_00072357 vs. Swiss-Prot (Human)
Match: ASIC2 (Acid-sensing ion channel 2 OS=Homo sapiens GN=ASIC2 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.459e-44
Identity = 138/464 (29.74%), Postives = 218/464 (46.98%), Query Frame = 2 
Query:  926 FIGNSTLHGFHYCFD-KRYRFRRIIWILVVMGSIGMLLQKLFEAGQKYFDRPFTSTSTVINPEKMKFPAVSLCNINDFRMSKLEGTTFLKIMKGELHYSI----------LSGPDYANASKQ--------------------ANHRLQNMLMDCTVNFMQQNKSIAKCSPANFSTFYQSQGEKCFTINSGNVNSHFADLSEGGRKKSLEMILDLEHYDYFD--------KNDVGVRLIIHDQDETP-IRFSGVALPPGFTSYVEVGKTETINLKKPYKTACDSRK--LDYFSVYSENACWLEKLTKFVTKKCHCKDGFMPGTERVCSVSELFNCTWPNWEAFKSIPKEEVDCPVACKVTDFNTLISYAQFPSNRIADRYAEQKFKLKGTIMEKRKFVRDNLLRIVIYYEKMTYKRITQAPSYDTMIXXXXXXXXXXXXXXTSILTYLEFFDYLAMIIYTKYFEI 2191
            F   STLHG  + F       RR++W +  +GS+G+LL +  E    YF     +    +  + + FPAV+LCN+N FR S+L  TT      GEL   +          L+ P    A +Q                      H L++M++ C   F  Q     +C   +F+T +   G KC+  NSG          +GG    LE++LD++  +Y            + GV++ IH Q E P I+  G  + PGF ++V   +     L  P+   C S +  LD+F VYS  AC ++  T+++ + C+C+   MPG    C+  +   C  P              C   C +T +N  +S  + PS + + +Y E+KF       +  K++ +N+L + I++E + Y+ I Q  +Y+   LLGDIGGQ+GLF+G SILT LE FDY+  +I  K  ++
Sbjct:   20 FANTSTLHGIRHIFVYGPLTIRRVLWAVAFVGSLGLLLVESSERVSYYFSYQHVTKVDEVVAQSLVFPAVTLCNLNGFRFSRL--TTNDLYHAGELLALLDVNLQIPDPHLADPSVLEALRQKANFKHYKPKQFSMLEFLHRVGHDLKDMMLYC--KFKGQ-----ECGHQDFTTVFTKYG-KCYMFNSGEDGKPLLTTVKGGTGNGLEIMLDIQQDEYLPIWGETEETTFEAGVKVQIHSQSEPPFIQELGFGVAPGFQTFVATQEQRLTYLPPPWG-ECRSSEMGLDFFPVYSITACRIDCETRYIVENCNCRMVHMPGDAPFCTPEQHKECAEPALGLLAEKDSNYCLCRTPCNLTRYNKELSMVKIPS-KTSAKYLEKKFN------KSEKYISENILVLDIFFEALNYETIEQKKAYEVAALLGDIGGQMGLFIGASILTILELFDYIYELIKEKLLDL 465
The following BLAST results are available for this feature:
BLAST of TCONS_00072357 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASIC23.459e-4429.74Acid-sensing ion channel 2 OS=Homo sapiens GN=ASIC... [more]
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