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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072448 ID=TCONS_00072448|Name=TCONS_00072448|organism=Clytia hemisphaerica|type=transcript|length=4902bpRun BLAST on NCBI protein sequence of TCONS_00072448-protein >TCONS_00072448-protein ID=TCONS_00072448-protein|Name=TCONS_00072448-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1449bp MLTVVSNENQDNMTRFVLTPKMENFGMVLQDLSTALRLNGGPVAALVNAERun BLAST on NCBI transcript from alignment at scaffold_77:449875..482681- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072448 ID=TCONS_00072448|Name=TCONS_00072448|organism=Clytia hemisphaerica|type=transcript|length=32807bp|location=Sequence derived from alignment at scaffold_77:449875..482681- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_77:449875..482681- >TCONS_00072448 ID=TCONS_00072448|Name=TCONS_00072448|organism=Clytia hemisphaerica|type=CDS|length=4350bp|location=Sequence derived from alignment at scaffold_77:449875..482681- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072448 vs. Swiss-Prot (Human)
Match: LOXH1 (Lipoxygenase homology domain-containing protein 1 OS=Homo sapiens GN=LOXHD1 PE=2 SV=3) HSP 1 Score: 134.42 bits (337), Expect = 2.684e-31 Identity = 72/241 (29.88%), Postives = 124/241 (51.45%), Query Frame = 2
Query: 1112 WLVTLQTSDIDGAYSDNTAYITLYGEKGKTSEYHLGVPPHTGAYFKGSTNEVEIKVEKVGELYKIRLGHDDDGVSLGWHLQNIILTNLETNDEYLFEVNTWLSRDHDDGEIIKEFAAAQDSAREALKTVTYQVQTYTSDQMDKQRDMDSNIFINIFGERGDTGKRQLINRSQNKTHFKSGQEDVFQIKAISLGPIEKIEITNDNSGENSALLLEKIKIKEISSFME--YSFTCQKWLKETK 1828
W + + T+D+ A +++ +I +YG+KG+T E L P+ + G + I++ +G YKIR+ HD GWHL+ + L N D+Y F N WL + DD EI++E A + R + Y V T + + D+N+++ +FG+ GDTG+R L N N F+ G D F I+++++ + ++ I +D G S L+++ ++E F C +WL + K
Sbjct: 149 WSLWVWTTDLKKAGTNSPIFIQIYGQKGRTDEILLN--PNNKWFKPGIIEKFRIELPDLGRFYKIRVWHDKRSSGSGWHLERMTLMNTLNKDKYNFNCNRWLDANEDDNEIVREMTAEGPTVRRIMGMARYHVTVCTGEL--EGAGTDANVYLCLFGDVGDTGERLLYNCRNNTDLFEKGNADEFTIESVTMRNVRRVRIRHDGKGSGSGWYLDRVLVREEGQPESDNVEFPCLRWLDKDK 385 HSP 2 Score: 109.383 bits (272), Expect = 1.382e-23 Identity = 66/237 (27.85%), Postives = 126/237 (53.16%), Query Frame = 2
Query: 1118 VTLQTSDIDGAYSDNTAYITLYGEKGKTSEYHL-GVPPHTGAYFKGSTNEVEIKVEKVGELYKIRLGHDDDGVSLGWHLQNIILT--NLETNDEYLFEVNTWLSRDHDDGEIIKEFAAAQDSAREALKTVTYQVQTYTSDQMDKQRDMDSNIFINIFGERGDTGKRQLINRSQN-KTHFKSGQEDVFQIKAISLGPIEKIEITNDNSGENSALLLEKIKIKEISSFMEYSFTCQKWL 1816
VT+ T +++GA +D Y+ L+G+ G T E L +T + KG+ +E I+ + + ++R+ HD G GW+L +++ +D F WL +D DDG++++E + SA LK Y + T D DS ++I ++G++ DT K+ L+ N K +F+ G+ D F ++ +++G I ++ I +D++G +++ L ++I+ +Y+F +WL
Sbjct: 279 VTVCTGELEGAGTDANVYLCLFGDVGDTGERLLYNCRNNTDLFEKGNADEFTIESVTMRNVRRVRIRHDGKGSGSGWYLDRVLVREEGQPESDNVEFPCLRWLDKDKDDGQLVRELLPSDSSA--TLKNFRYHISLKTGDVSGAS--TDSRVYIKLYGDKSDTIKQVLLVSDNNLKDYFERGRVDEFTLETLNIGNINRLVIGHDSTGMHASWFLGSVQIRVPRQGKQYTFPANRWL 511 HSP 3 Score: 107.842 bits (268), Expect = 3.437e-23 Identity = 77/258 (29.84%), Postives = 131/258 (50.78%), Query Frame = 2
Query: 1118 VTLQTSDIDGAYSDNTAYITLYG-EKGKTSEYHLGVPPHTGAYF--KGSTNEVEIKVEKVGELY-KIRLGHDDDGVSLGWHLQNI----ILTNLETNDEYLFEVNTWLSRDHDDGEIIKEFAA----------------AQDSAREALKTVTYQVQTYTSDQMDKQRDMDSNIFINIFGERGDTGKRQLINRSQNKTH-FKSGQEDVFQIKAISLGPIEKIEITNDNSGENSALLLEKIKIKEISSFMEYSFTCQKWL 1816
+TL TSD+ A +D +I +YG + T + +L F + S + +++E VGE+ KIR+GH++ G++ GWH ++ +L + + + F + WL+ DD + I+E E L V Y VQ +T + D+ ++I I+G+ GDTG+R L +S+N+T+ F+ G D F I+A LG I KI++ +DNS + +EK++I ++ E+ F C +WL
Sbjct: 1032 ITLYTSDVFAAGTDANIFIIIYGCDAVCTQQKYLCTNKREQKQFFERKSASRFIVELEDVGEIIEKIRIGHNNTGMNPGWHCSHVDIRRLLPDKDGAETLTFPCDRWLATSEDDKKTIRELVPYDIFTEKYMKDGSLRQVYKEVEEPLDIVLYSVQIFTGNI--PGAGTDAKVYITIYGDLGDTGERYL-GKSENRTNKFERGTADTFIIEAADLGVIYKIKLRHDNSKWCADWYVEKVEIWNDTNEDEFLFLCGRWL 1286 HSP 4 Score: 104.375 bits (259), Expect = 3.803e-22 Identity = 67/256 (26.17%), Postives = 118/256 (46.09%), Query Frame = 2
Query: 1118 VTLQTSDIDGAYSDNTAYITLYGEK-GKTSEYHLGVPPHTGAYFKGSTNEVEIKVEKVGELYKIRLGHDDDGVSLGWHLQNIILTNLETNDEYLFEVNTWLSRDHDDGEIIKEFAAAQDS----------------------AREALKTVTYQVQTYTSDQMDKQRDMDSNIFINIFGERGDTGKRQLINRSQNKTHFKSGQEDVFQIKAISLGPIEKIEITNDNSGENSALLLEKIKIKEISSFMEYSFTCQKWL 1816
V + T ++ A +D Y+T+YGE+ G T E L + + +G T+ I +G L KIR+ HD+ G GW L I +T++ Y F WL+ + DDG++ +E +S + K+ T+ V T + K D+N+FI +FG + DTG L + N F+ ++F ++ + LG + K+ + +DN+G+ ++ +++ S +F C +WL
Sbjct: 748 VQVVTGNVPKAGTDANVYLTIYGEEYGDTGERPLKKSDKSNKFEQGQTDTFTIYAIDLGALTKIRIRHDNTGNRAGWFLDRIDITDMNNEITYYFPCQRWLAVEEDDGQLSRELLPVDESYVLPQSEEGRGGGDNNPLDNLALEQKDKSTTFSVTIKTG--VKKNAGTDANVFITLFGTQDDTGMTLLKSSKTNSDKFERDSIEIFTVETLDLGDLWKVRLGHDNTGKAPGWFVDWVEVDAPSLGKCMTFPCGRWL 1001 HSP 5 Score: 100.908 bits (250), Expect = 4.576e-21 Identity = 73/275 (26.55%), Postives = 123/275 (44.73%), Query Frame = 2
Query: 1109 LWLVTLQTSDIDGAYSDNTAYITLYGEKGKTSEYHLGVPPH-TGAYFKGSTNEVEIKVEKVGELYKIRLGHDDDGVSLGWHLQNIILTNLETNDEYLFEVNTWLSRDHDDGEI----------------------IKEFAAAQDSAREALKTVTYQ----------VQTYTSDQMDKQRDM--DSNIFINIFGERGDTGKRQLINRSQNKTHFKSGQEDVFQIKAISLGPIEKIEITNDNSGENSALLLEKIKIKEISSFMEYSFTCQKWLKETK 1828
L+ V + T +I GA +D YIT+YG+ G T E +LG + T + +G+ + I+ +G +YKI+L HD+ W+++ + + N DE+LF WLS +DG + E A + A + TVT + Y S K +D DS FI + GE + KR ++ + K F G + F + + +G I+KIE+ +D + S L+E++ + + +Y C WL + +
Sbjct: 1183 LYSVQIFTGNIPGAGTDAKVYITIYGDLGDTGERYLGKSENRTNKFERGTADTFIIEAADLGVIYKIKLRHDNSKWCADWYVEKVEIWNDTNEDEFLFLCGRWLSLKKEDGRLERLFYEKEYTGDRSSNCSSPADFWEIALSSKMADVDISTVTGPMADYVQEGPIIPYYVSVTTGKHKDAATDSRAFIFLIGEDDERSKRIWLDYPRGKRGFSRGSVEEFYVAGLDVGIIKKIELGHDGASPESCWLVEELCLAVPTQGTKYMLNCNCWLAKDR 1457 HSP 6 Score: 100.523 bits (249), Expect = 7.277e-21 Identity = 73/242 (30.17%), Postives = 116/242 (47.93%), Query Frame = 2
Query: 1109 LWLVTLQTSDIDGAYSDNTAYITLYGEKGKTSEYHLGVPPHTGAYFKGSTNEVEI-KVEKVGELYKIRLGHDDDGVSLGWHLQNIILTNLETNDEYLFEVNTWLSRDHDDGEIIKEFAAAQDSAREALKTVTYQVQTYTSDQMDKQRDMDSNIFINIFGERGDTGKRQLINRSQNKTHFKSGQEDVFQIK-AISLGPIEKIEITNDNSGENSALLLEKIKIKEISSFMEYSFTCQKWLKETK 1828
L+ +T+ T D+ G +D+ ++TLYG G T E L A F+ N+ I ++ + K+R+ D G W L+ I+L N+ T D +F WLS+ ++ E A D E ++ +Y V TSD + D+N+FI IFGE GD+G L +S N F+ D F +SLG + K+ + +DN G L + +K+ S + F C WL +++
Sbjct: 1481 LYEMTVWTGDVVGGGTDSNIFMTLYGINGSTEEMQL---DKKKARFEREQNDTFIMEILDIAPFTKMRIRIDGLGSRPEWFLERILLKNMNTGDLTMFYYGDWLSQRKGKKTLVCEMCAVIDE-EEMMEWTSYTVAVKTSDILGA--GTDANVFIIIFGENGDSGTLAL-KQSANWNKFERNNTDTFNFPDMLSLGHLCKLRVWHDNKGIFPGWHLSYVDVKDNSRDETFHFQCDCWLSKSE 1715 HSP 7 Score: 96.6709 bits (239), Expect = 1.081e-19 Identity = 53/148 (35.81%), Postives = 84/148 (56.76%), Query Frame = 2
Query: 1376 ETNDEYLFEVNTWLSRDHDDGEIIKEFAAAQDSAREALKTVTYQVQTYTSDQMDKQRDMDSNIFINIFGER-GDTGKRQLINRSQNKTHFKSGQEDVFQIKAISLGPIEKIEITNDNSGENSALLLEKIKIKEISSFMEYSFTCQKWL 1816
E +++ FE + WL+R +D E++ E A E TY+VQ T + + D+N+++ I+GE GDTG+R L +S F+ GQ D F I AI LG + KI I +DN+G + L++I I ++++ + Y F CQ+WL
Sbjct: 707 EVIEQHKFEAHRWLARGKEDNELVVELVPAGKPGPER---NTYEVQVVTGNV--PKAGTDANVYLTIYGEEYGDTGERPL-KKSDKSNKFEQGQTDTFTIYAIDLGALTKIRIRHDNTGNRAGWFLDRIDITDMNNEITYYFPCQRWL 848 HSP 8 Score: 93.5893 bits (231), Expect = 7.576e-19 Identity = 61/236 (25.85%), Postives = 117/236 (49.58%), Query Frame = 2
Query: 1112 WLVTLQTSDIDGAYSDNTAYITLYGEKGKTSEYHLGVPPHTGAYFKGSTNEVEIKVEKV-GELYKIRLGHDDDGVSLGWHLQNIILTNLETNDEYLFEVNTWLSRDHDDGEIIKEFAAAQDSAREALKTVTYQVQTYTSDQMDKQRDMDSNIFINIFGERGDTGKRQLINRSQNKTHFKSGQEDVFQIKAISLGPIEKIEITNDNSGENSALLLEKIKIKEISSFMEYSFTCQKWL 1816
++VT+ T D+ GA + + Y+ +YG +G + + + G + +G T+ I++ + L ++ +GH + GV+ GW + +++ T + F + WL DG I ++ ++ LK + + +T+D K+ +S IFI I+G++G T + L + N FK G + F+I+ LG KI + +D S LE++ + + +Y+F C +WL
Sbjct: 20 YIVTVFTGDVRGAGTKSKIYLVMYGARGNKNSGKIFL--EGGVFDRGRTDIFHIELAVLLSPLSRVSVGHGNVGVNRGWFCEKVVILCPFTGIQQTFPCSNWLDEKKADGLIERQLYEMVSLRKKRLKKFPWSLWVWTTDL--KKAGTNSPIFIQIYGQKGRTDEILL---NPNNKWFKPGIIEKFRIELPDLGRFYKIRVWHDKRSSGSGWHLERMTLMNTLNKDKYNFNCNRWL 248 HSP 9 Score: 91.2781 bits (225), Expect = 3.822e-18 Identity = 57/221 (25.79%), Postives = 112/221 (50.68%), Query Frame = 2
Query: 1118 VTLQTSDIDGAYSDNTAYITLYGEKGKTSEYHLGVPPHT-GAYF-KGSTNEVEIKVEKVGELYKIRLGHDDDGVSLGWHLQNIILTNLETNDEYLFEVNTWLSRDHDDGEIIKEFAAAQDSAREALKTVTYQVQTYTSDQMDKQRDMDSNIFINIFGERGDTGKRQLINRSQNKTHFKSGQEDVFQIKAISLGPIEKIEITNDNSGENSALLLEKIKIKEI 1774
++L+T D+ GA +D+ YI LYG+K T + L V + YF +G +E ++ +G + ++ +GHD G+ W L ++ + +Y F N WL ++ DG + E ++ E K V Y+V+ +T D + +++ I+GE+G T L +RS+ F+ +D FQ++A +G + K+ + + G + ++ + ++ +
Sbjct: 410 ISLKTGDVSGASTDSRVYIKLYGDKSDTIKQVLLVSDNNLKDYFERGRVDEFTLETLNIGNINRLVIGHDSTGMHASWFLGSVQIRVPRQGKQYTFPANRWLDKNQADGRLEVELYPSE--VVEIQKLVHYEVEIWTGDV--GGAGTSARVYMQIYGEKGKTEVLFLSSRSK---VFERASKDTFQLEAADVGEVYKLRLGHTGEGFGPSWFVDTVWLRHL 623 HSP 10 Score: 89.7373 bits (221), Expect = 1.096e-17 Identity = 65/241 (26.97%), Postives = 113/241 (46.89%), Query Frame = 2
Query: 1118 VTLQTSDIDGAYSDNTAYITLYGEKGKTSEYHLGVPPHTGAYFKGSTNEV-EIKVEKVGELYKIRLGHDDDGVSLGWHLQNIILTNLETNDEYLFEVNTWLSRDHDDGEIIKEFAAAQDSAREALKTVTYQVQTYTSDQMDKQRDMDSNIFINIFGERGDTGKRQLI--NRSQNKTHFKSGQEDVFQIKAISLGP-IEKIEITNDNSGENSALLLEKIKIKEI----SSFMEYSFTCQKWL 1816
VT++T A +D +ITL+G + T L F+ + E+ ++ +G+L+K+RLGHD+ G + GW + + + F WL+++ DDG II++ A+ R V Y++ YTSD D+NIFI I+G +++ + N+ + K F+ F ++ +G IEKI I ++N+G N + I+ + +F C +WL
Sbjct: 901 VTIKTGVKKNAGTDANVFITLFGTQDDTGMTLLKSSKTNSDKFERDSIEIFTVETLDLGDLWKVRLGHDNTGKAPGWFVDWVEVDAPSLGKCMTFPCGRWLAKNEDDGSIIRDLFHAELQTRLYTPFVPYEITLYTSDVF--AAGTDANIFIIIYGCDAVCTQQKYLCTNKREQKQFFERKSASRFIVELEDVGEIIEKIRIGHNNTGMNPGWHCSHVDIRRLLPDKDGAETLTFPCDRWL 1139 HSP 11 Score: 88.5817 bits (218), Expect = 2.818e-17 Identity = 65/240 (27.08%), Postives = 106/240 (44.17%), Query Frame = 2
Query: 1112 WLVTLQTSDIDGAYSDNTAYITLYGEKGKTSE-YHLGVPPHTGAYFKGSTNEVEIKVEKVGELYKIRLGHDDDGVSLGWHLQNIILTNLETNDEYLFEVNTWLSRDHDDGEIIKEFAAAQDSAREALKTVTYQVQTYTSDQMDKQRDMDSNIFINIFGERGDTGKRQLINRSQNKTHFKSGQEDVFQIKAISLGPIEKIEITNDNSGENSALLLEKIKIKEISSFMEYSFTCQKWLKETK 1828
+ V++ T A +D+ A+I L GE + S+ L P + +GS E + VG + KI LGHD W ++ + L +Y+ N WL++D DG + F V Y++ +T D + DSNIF+ ++G G T + QL + K F+ Q D F ++ + + P K+ I D G LE+I +K +++ F WL + K
Sbjct: 1351 YYVSVTTGKHKDAATDSRAFIFLIGEDDERSKRIWLDYPRGKRGFSRGSVEEFYVAGLDVGIIKKIELGHDGASPESCWLVEELCLAVPTQGTKYMLNCNCWLAKDRGDGITSRVFDLLDAMVVNIGVKVLYEMTVWTGDVVGG--GTDSNIFMTLYGINGSTEEMQL---DKKKARFEREQNDTFIMEILDIAPFTKMRIRIDGLGSRPEWFLERILLKNMNTGDLTMFYYGDWLSQRK 1585 HSP 12 Score: 88.5817 bits (218), Expect = 2.842e-17 Identity = 52/197 (26.40%), Postives = 102/197 (51.78%), Query Frame = 2
Query: 1118 VTLQTSDIDGAYSDNTAYITLYGEKGKTSEYHLGVPPHTGAYFKGSTNEVEIK-VEKVGELYKIRLGHDDDGVSLGWHLQNIILTNLETNDEYLFEVNTWLSRDHDDGEIIKEFAAAQDSAREALKTVTYQVQTYTSDQMDKQRDMDSNIFINIFGERGDTGKRQLINRSQNKTHFKSGQEDVFQIKAISLGPIEKI 1705
V ++TSDI GA +D +I ++GE G + L + + + +T+ + +G L K+R+ HD+ G+ GWHL + + + ++ + F+ + WLS+ DG+ +++FA A + + L+ TY++ T + + + N+++ + G R + K L+ S + F+ G D F+ +I LG I +
Sbjct: 1611 VAVKTSDILGAGTDANVFIIIFGENGDSGTLALKQSANWNKFERNNTDTFNFPDMLSLGHLCKLRVWHDNKGIFPGWHLSYVDVKDNSRDETFHFQCDCWLSKSEGDGQTVRDFACANNKICDELEETTYEIVIETGNGGETR----ENVWLILEG-RKNRSKEFLMENSSRQRAFRKGTTDTFEFDSIYLGDIASL 1802 HSP 13 Score: 86.6557 bits (213), Expect = 9.247e-17 Identity = 57/179 (31.84%), Postives = 94/179 (52.51%), Query Frame = 2
Query: 4268 LKEFNWKVLVSTGNDDDAGTSSNVSIMLFGSKGQSEYKVLGLPDRKSGMTFQRGKTKVFDIKTQNIGKLKKIRVMHDQSGKEPDWKLRKLTLENKNSQAKNTKFILPCNRWLSEKEGDHSTVREI----PVDHKKTPVSLYRIHVETGDMENETIDPKLFVDLH---GTEGEXIEYTSR 4783
LK+F W + V T + AGT+S + I ++G KG+++ ++L P+ K F+ G + F I+ ++G+ KIRV HD+ W L ++TL N ++ K+ CNRWL E D+ VRE+ P + ++ Y + V TG++E D +++ L G GE + Y R
Sbjct: 144 LKKFPWSLWVWTTDLKKAGTNSPIFIQIYGQKGRTD-EILLNPNNKW---FKPGIIEKFRIELPDLGRFYKIRVWHDKRSSGSGWHLERMTLMNTLNK---DKYNFNCNRWLDANEDDNEIVREMTAEGPTVRRIMGMARYHVTVCTGELEGAGTDANVYLCLFGDVGDTGERLLYNCR 315 The following BLAST results are available for this feature:
BLAST of TCONS_00072448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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