TCONS_00072545 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072545
Unique NameTCONS_00072545
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length682

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072545 ID=TCONS_00072545|Name=TCONS_00072545|organism=Clytia hemisphaerica|type=transcript|length=682bp
TGCTGAAAATGAGCAACCAAGACTTGATTATAAACGTTACTTTCGACCCA
TTCAGTGCACTAGATAAGAAAGTCGACCATTCATTTAACGAGCTTtgtaa
acaagaaaaattgacaCAAAAACGAGAAAATATCATTTCATTATCGCTTT
CTGAAGCTGTTGGTGAAAGAAGGAATGTCACCGATTTTTACAACTGTTCC
TCATTACCATCCAAAAATATTGCTGACATCATGCTtctcttaaaaaacaa
acacaaacaTCGAAAAATACATTTCCTTTTTGATGAAGTGCCGCAAGAGC
TGTTCACAAAGACCTACTCAGAAACACTACGTGGCCGTTTGGAGAGTGAA
TTTCGAGAATCAGTTGTCGTGATTGCCCTCCAAAGTGTACAGAAATCTCG
AAAGATAACCGAGGAAGGCAAGGTCACCAATTCACAGGAGATTGATTTAA
AAAGCTCAGGCATGGAACTTTTCAAACTACCAACCACAATGAGGATGAGC
AATTGCTTACataaattgaaagaagtttTGGAAGGTGAAATCGAAAGTTC
GCCCTGCTCCATAAACTTAGAAGTTCGATCGAAAGgaaacGTTTTGCTAA
CAAAAGACGAATCTAACAAGGCCATAATCCACGAAACTCAACCAAATGGA
GATAGGCCAGGTGGCTCTCAATCAacaacaaa
Run BLAST on NCBI

protein sequence of TCONS_00072545-protein

>TCONS_00072545-protein ID=TCONS_00072545-protein|Name=TCONS_00072545-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
LKMSNQDLIINVTFDPFSALDKKVDHSFNELCKQEKLTQKRENIISLSLS
EAVGERRNVTDFYNCSSLPSKNIADIMLLLKNKHKHRKIHFLFDEVPQEL
FTKTYSETLRGRLESEFRESVVVIALQSVQKSRKITEEGKVTNSQEIDLK
SSGMELFKLPTTMRMSNCLHKLKEVLEGEIESSPCSINLEVRSKGNVLLT
KDESNKAIIHETQPNGDRPGGSQSTT
Run BLAST on NCBI

transcript from alignment at scaffold_8:200014..200827+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072545 ID=TCONS_00072545|Name=TCONS_00072545|organism=Clytia hemisphaerica|type=transcript|length=814bp|location=Sequence derived from alignment at scaffold_8:200014..200827+ (Clytia hemisphaerica)
TGCTGAAAATGAGCAACCAAGACTTGATTATAAACGTTACTTTCGACCCA
TTCAGTGCACTAGATAAGAAAGTCGACCATTCATTTAACGAGCTTtgtaa
acaagaaaaattgacaCAAAAACGAGAAAATATCATTTCATTATCGCTTT
CTGAAGCTGTTGGTGAAAGAAGGAATGTCACCGATTTTTACAACTGTTCC
TCATTACCATCCAAAAATATTGCTGACATCATGCTtctcttaaaaaacaa
acacaaacaTCGAAAAATACATTTCCTTTTTGATGAAGTGCCGCAAGAGC
TGTTCACAAAGACCTACTCAGAAACACTACGTGGCCGTTTGGAGAGTGAA
TTTCGAGAATCAGTTGTCGTGATTGCCCTCCAAAGTGTACAGAAATCTCG
AAAGATAACCGAGGAAGGCAAGGTCACCAATTCACAGGAGATTGATTTAA
AAAGCTCAGGCATGGAACTTTTCAAACTACCAACCACAATGAGGATGAGC
AATTGCTTACataaattgaaagaagtttTGGAAGGTGAAATCGAAAGTTC
GCCCTGCTCCATAAACTTAGAAGTTCGATCGAAAGGTATAACATACCATT
TAAGTAACATTCTTTTATAATCGTGTTCAATTGCAACAGTGTGCAAGTAA
AATATGCTCATTTCCATTTATGACCGAAATATTTTCTTACTAgtacattt
taattttaatttttcaggaaacGTTTTGCTAACAAAAGACGAATCTAACA
AGGCCATAATCCACGAAACTCAACCAAATGGAGATAGGCCAGGTGGCTCT
CAATCAacaacaaa

Coding sequence (CDS) from alignment at scaffold_8:200014..200827+

>TCONS_00072545 ID=TCONS_00072545|Name=TCONS_00072545|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at scaffold_8:200014..200827+ (Clytia hemisphaerica)
CTGAAAATGAGCAACCAAGACTTGATTATAAACGTTACTTTCGACCCATT
CAGTGCACTAGATAAGAAAGTCGACCATTCATTTAACGAGCTTtgtaaac
aagaaaaattgacaCAAAAACGAGAAAATATCATTTCATTATCGCTTTCT
GAAGCTGTTGGTGAAAGAAGGAATGTCACCGATTTTTACAACTGTTCCTC
ATTACCATCCAAAAATATTGCTGACATCATGCTtctcttaaaaaacaaac
acaaacaTCGAAAAATACATTTCCTTTTTGATGAAGTGCCGCAAGAGCTG
TTCACAAAGACCTACTCAGAAACACTACGTGGCCGTTTGGAGAGTGAATT
TCGAGAATCAGTTGTCGTGATTGCCCTCCAAAGTGTACAGAAATCTCGAA
AGATAACCGAGGAAGGCAAGGTCACCAATTCACAGGAGATTGATTTAAAA
AGCTCAGGCATGGAACTTTTCAAACTACCAACCACAATGAGGATGAGCAA
TTGCTTACataaattgaaagaagtttTGGAAGGTGAAATCGAAAGTTCGC
CCTGCTCCATAAACTTAGAAGTTCGATCGAAAGgaaacGTTTTGCTAACA
AAAGACGAATCTAACAAGGCCATAATCCACGAAACTCAACCAAATGGAGA
TAGGCCAGGTGGCTCTCAATCAacaaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045018XLOC_045018Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072545-proteinTCONS_00072545-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072545-exon-scaffold_8-1491911889:200014..200598TCONS_00072545-exon-scaffold_8-1491911889:200014..200598Clytia hemisphaericaexon
TCONS_00072545-exon-scaffold_8-1510915933:200014..200598TCONS_00072545-exon-scaffold_8-1510915933:200014..200598Clytia hemisphaericaexon
TCONS_00072545-exon-scaffold_8-1575043694:200014..200598TCONS_00072545-exon-scaffold_8-1575043694:200014..200598Clytia hemisphaericaexon
TCONS_00072545-exon-scaffold_8-1491911889:200731..200827TCONS_00072545-exon-scaffold_8-1491911889:200731..200827Clytia hemisphaericaexon
TCONS_00072545-exon-scaffold_8-1510915933:200731..200827TCONS_00072545-exon-scaffold_8-1510915933:200731..200827Clytia hemisphaericaexon
TCONS_00072545-exon-scaffold_8-1575043694:200731..200827TCONS_00072545-exon-scaffold_8-1575043694:200731..200827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:200014..200827 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.926297	0	0	3.38051	1.88113	3.64931	5.13546	3.16446	4.68277	5.7749	3.4704	14.3606	12.0229	6.73824	11.0802	7.70062	10.8196	22.5707	18.1105	11.1104	8.13876	5.17268	10.432	13.1456	16.5158	39.6808	34.3148	25.7883	20.685
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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