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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072664 ID=TCONS_00072664|Name=TCONS_00072664|organism=Clytia hemisphaerica|type=transcript|length=885bp
TGTTGCCATGACATTGACGATCGCTGCTCTAATCACTGCAATCCAATTCT
GGTTACGACTTGCCACCTTCCTTCATGGACCTCTAAAGTCATTTCTACTT
CATGTACTCCATGACCCTTCATACAATGGTCTACCTCAAGACCCTCAAAA
ACTATATCAAGCACTCTCGACACCTGCCAATCGAAAGACGATAAATGACT
TGAAGAATGGAAAGAAcggaaaaaagaaagttttacaaCAAGATCAGGTG
GATGCATTACTACCTCCTACTGGAAACGCAACCGACTCATCTCAATTTGA
TGTTACACTCATCTGTATTTTGATTATCAATTTTACCAATCTTCCTGCTC
CTCTCAAAGGATGGAAAAACAAAAATCCACCTGCAACTGACTTGAGTATC
GGTGCATTTGTAATTCGTGCGAGAGAATGGCGAAATTACATTCACCACAC
AGATCCAgataaaatcaatcaaacagAATTTAATCAGAAATGGATGGAAG
GAGAGCAAATCATCAACAATCTTGGCTTCACTTACGACACAATGCAGCTG
AAAACAATGTCATTGGACCTAAAGTACGAGAAGGTTGTCAAATCTATGTA
TTTGTATCTAGAGAGAAAGCAAGAAACACTTTCTAAACAACAGATGGCCC
TCGCTGCTCAACATACGGCCCTGGATACTAAACAGACGGCGCTGGATACC
AAACAGACGGCGCTGGATACTAAACAGACAACCCTGGATACTAAACAGAC
GGCGCTGGATTCCAAACAGACAGCCCTAGCAGACAAGCAGGCAGCCCTTG
AGAATCAACACAAATCCCTCGACAACCAACAAGCATCATTATCTCAAGAT
GTTACAGATTTACAAATTTCAACAACTCAAAAACT Run BLAST on NCBI protein sequence of TCONS_00072664-protein >TCONS_00072664-protein ID=TCONS_00072664-protein|Name=TCONS_00072664-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
VAMTLTIAALITAIQFWLRLATFLHGPLKSFLLHVLHDPSYNGLPQDPQK
LYQALSTPANRKTINDLKNGKNGKKKVLQQDQVDALLPPTGNATDSSQFD
VTLICILIINFTNLPAPLKGWKNKNPPATDLSIGAFVIRAREWRNYIHHT
DPDKINQTEFNQKWMEGEQIINNLGFTYDTMQLKTMSLDLKYEKVVKSMY
LYLERKQETLSKQQMALAAQHTALDTKQTALDTKQTALDTKQTTLDTKQT
ALDSKQTALADKQAALENQHKSLDNQQASLSQDVTDLQISTTQK Run BLAST on NCBI transcript from alignment at scaffold_81:85496..86485+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072664 ID=TCONS_00072664|Name=TCONS_00072664|organism=Clytia hemisphaerica|type=transcript|length=990bp|location=Sequence derived from alignment at scaffold_81:85496..86485+ (Clytia hemisphaerica)
TGTTGCCATGACATTGACGATCGCTGCTCTAATCACTGCAATCCAATTCT
GGTTACGACTTGCCACCTTCCTTCATGGACCTCTAAAGTCATTTCTACTT
CATGTACTCCATGACCCTTCATACAATGGTCTACCTCAAGACCCTCAAAA
ACTATATCAAGCACTCTCGACACCTGCCAATCGAAAGACGATAAATGACT
TGAAGAATGGAAAGAAcggaaaaaagaaagttttacaaCAAGATCAGGTG
GATGCATTACTACCTCCTACTGGAAACGCAACCGACTCATCTCAATTTGA
TGTTACACTCATCTGTATTTTGATTATCAATTTTACCAATCTTCCTGCTC
CTCTCAAAGGATGGAAAAACAAAAATCCACCTGCAACTGACTTGAGTATC
GGTGCATTTGTAATTCGTGCGAGAGAATGGCGAAATTACATTCACCACAC
AGATCCAgataaaatcaatcaaacagAATTTAATCAGAAATGGATGGAAG
GAGAGCAAATCATCAACAATCTTGGCTTCACTTACGACACAATGCAGCTG
AAAACAATGTCATTGGACCTAAAGTACGAGAAGGTTGTCAAATCTATGTA
TTTGTATCTAGAGAGAAAGCAAGAAACACTTTCTAAACAACAGATGGCCC
TCGCTGCTCAACATACGGCCCTGGATACTAAACATACGGCCCTGGATACG
AAACATACGGCCCTAGCTACTCAACATACGGCCCTGGATACTAAACATAC
GGCCCTGGATACTAAACATACGGCCCTGGATACTAAACAGACGGCGCTGG
ATACCAAACAGACGGCGCTGGATACTAAACAGACAACCCTGGATACTAAA
CAGACGGCGCTGGATTCCAAACAGACAGCCCTAGCAGACAAGCAGGCAGC
CCTTGAGAATCAACACAAATCCCTCGACAACCAACAAGCATCATTATCTC
AAGATGTTACAGATTTACAAATTTCAACAACTCAAAAACT Coding sequence (CDS) from alignment at scaffold_81:85496..86485+ >TCONS_00072664 ID=TCONS_00072664|Name=TCONS_00072664|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_81:85496..86485+ (Clytia hemisphaerica)
GTTGCCATGACATTGACGATCGCTGCTCTAATCACTGCAATCCAATTCTG
GTTACGACTTGCCACCTTCCTTCATGGACCTCTAAAGTCATTTCTACTTC
ATGTACTCCATGACCCTTCATACAATGGTCTACCTCAAGACCCTCAAAAA
CTATATCAAGCACTCTCGACACCTGCCAATCGAAAGACGATAAATGACTT
GAAGAATGGAAAGAAcggaaaaaagaaagttttacaaCAAGATCAGGTGG
ATGCATTACTACCTCCTACTGGAAACGCAACCGACTCATCTCAATTTGAT
GTTACACTCATCTGTATTTTGATTATCAATTTTACCAATCTTCCTGCTCC
TCTCAAAGGATGGAAAAACAAAAATCCACCTGCAACTGACTTGAGTATCG
GTGCATTTGTAATTCGTGCGAGAGAATGGCGAAATTACATTCACCACACA
GATCCAgataaaatcaatcaaacagAATTTAATCAGAAATGGATGGAAGG
AGAGCAAATCATCAACAATCTTGGCTTCACTTACGACACAATGCAGCTGA
AAACAATGTCATTGGACCTAAAGTACGAGAAGGTTGTCAAATCTATGTAT
TTGTATCTAGAGAGAAAGCAAGAAACACTTTCTAAACAACAGATGGCCCT
CGCTGCTCAACATACGGCCCTGGATACTAAACAGACGGCGCTGGATACCA
AACAGACGGCGCTGGATACTAAACAGACAACCCTGGATACTAAACAGACG
GCGCTGGATTCCAAACAGACAGCCCTAGCAGACAAGCAGGCAGCCCTTGA
GAATCAACACAAATCCCTCGACAACCAACAAGCATCATTATCTCAAGATG
TTACAGATTTACAAATTTCAACAACTCAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072664-exon-scaffold_81-1491911889:85496..86157 | TCONS_00072664-exon-scaffold_81-1491911889:85496..86157 | Clytia hemisphaerica | exon |
| TCONS_00072664-exon-scaffold_81-1510915933:85496..86157 | TCONS_00072664-exon-scaffold_81-1510915933:85496..86157 | Clytia hemisphaerica | exon |
| TCONS_00072664-exon-scaffold_81-1575043694:85496..86157 | TCONS_00072664-exon-scaffold_81-1575043694:85496..86157 | Clytia hemisphaerica | exon |
| TCONS_00072664-exon-scaffold_81-1491911889:86263..86485 | TCONS_00072664-exon-scaffold_81-1491911889:86263..86485 | Clytia hemisphaerica | exon |
| TCONS_00072664-exon-scaffold_81-1510915933:86263..86485 | TCONS_00072664-exon-scaffold_81-1510915933:86263..86485 | Clytia hemisphaerica | exon |
| TCONS_00072664-exon-scaffold_81-1575043694:86263..86485 | TCONS_00072664-exon-scaffold_81-1575043694:86263..86485 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_81 | supercontig | scaffold_81:85496..86485 + |
Blast
The following BLAST results are available for this feature:
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