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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072700 ID=TCONS_00072700|Name=TCONS_00072700|organism=Clytia hemisphaerica|type=transcript|length=1665bpRun BLAST on NCBI protein sequence of TCONS_00072700-protein >TCONS_00072700-protein ID=TCONS_00072700-protein|Name=TCONS_00072700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=428bp LVVTSVVSVVVYKVVSRVDWFKTITNGAFASSMTSSVLNSISILLLGRLYRun BLAST on NCBI transcript from alignment at scaffold_82:365954..394065+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072700 ID=TCONS_00072700|Name=TCONS_00072700|organism=Clytia hemisphaerica|type=transcript|length=28112bp|location=Sequence derived from alignment at scaffold_82:365954..394065+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_82:365954..394065+ >TCONS_00072700 ID=TCONS_00072700|Name=TCONS_00072700|organism=Clytia hemisphaerica|type=CDS|length=1287bp|location=Sequence derived from alignment at scaffold_82:365954..394065+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00072700 vs. Swiss-Prot (Human)
Match: ANO7 (Anoctamin-7 OS=Homo sapiens GN=ANO7 PE=1 SV=2) HSP 1 Score: 142.895 bits (359), Expect = 1.150e-35 Identity = 111/345 (32.17%), Postives = 181/345 (52.46%), Query Frame = 3
Query: 144 RLYKTLAYKLTEWENHQTKTKYEDALILKLFGFQFVNSYASLFYIAFFRQRTSEGVFNLGTEYS---DSCGDNNDCMSLLSLQVAVLMIAKPMPKFFSDIILPFVMKYARKLCCCFKRQSTNVISSLELQQKDTSDDAEYEAYLRHEHKKPPLDDFTLSEYTEKVLQYGYXXXXXXXXXXXXXXXXXTNLIDMRVDARRMLWFNRRPFAERAEDIGMWFAILNFLNYVGMLTNALILGLTS--------QYGNQYKMKTF-NVNLPSNVTAFNTTTNQTVNSFPVTIESNN-----------NLWIILIFENVVLAVKFVIAYAIPDIPESVSEAKSQEKIQLGK 1109
++Y +LA+ LT WE H+T+TK+EDA LK+F FQFVN Y+S YIAFF+ R N T + + C C+ L+ ++ V+M+ K + ++++P + + +K K++ +S Q DD E P + EY E VLQ+G++ +F AA PLAPL AL+ N +++R+DAR+ + RRP AERA+DIG+WF IL L ++ +++NA +L +S ++ + ++ F N L ++F N+T + + L +++FE+VV +V ++ +PDIPESV E K + + L K
Sbjct: 562 KIYVSLAHVLTRWEMHRTQTKFEDAFTLKVFIFQFVNFYSSPVYIAFFKGRFVGYPGNYHTLFGVRNEECAAGG-CLIELAQELLVIMVGKQVINNMQEVLIPKLKGWWQKFRLRSKKRKAG--ASAGASQGPWEDDYELV----------PCEGL-FDEYLEMVLQFGFVTIFVAACPLAPLFALLNNWVEIRLDARKFVCEYRRPVAERAQDIGIWFHILAGLTHLAVISNAFLLAFSSDFLPRAYYRWTRAHDLRGFLNFTLARAPSSFAAAHNRTCRYRAFRDDDGHYSQTYWNLLAIRLAFVIVFEHVVFSVGRLLDLLVPDIPESV-EIKVKREYYLAK 891 The following BLAST results are available for this feature:
BLAST of TCONS_00072700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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