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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072702 ID=TCONS_00072702|Name=TCONS_00072702|organism=Clytia hemisphaerica|type=transcript|length=3221bpRun BLAST on NCBI protein sequence of TCONS_00072702-protein >TCONS_00072702-protein ID=TCONS_00072702-protein|Name=TCONS_00072702-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1034bp IYLHQMGESLNMFLVLVVVICLSTSPVATASDCSYIFTKPQGLIQSPGYPRun BLAST on NCBI transcript from alignment at scaffold_82:415695..428866+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072702 ID=TCONS_00072702|Name=TCONS_00072702|organism=Clytia hemisphaerica|type=transcript|length=13172bp|location=Sequence derived from alignment at scaffold_82:415695..428866+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_82:415695..428866+ >TCONS_00072702 ID=TCONS_00072702|Name=TCONS_00072702|organism=Clytia hemisphaerica|type=CDS|length=3105bp|location=Sequence derived from alignment at scaffold_82:415695..428866+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072702 vs. Swiss-Prot (Human)
Match: MATN2 (Matrilin-2 OS=Homo sapiens GN=MATN2 PE=1 SV=4) HSP 1 Score: 218.394 bits (555), Expect = 1.532e-58 Identity = 122/375 (32.53%), Postives = 192/375 (51.20%), Query Frame = 1
Query: 1210 CRNMNGQCQHICIDDKNKVTCKCYAGFYLDTDGHSCIDINECSSL--PCQEVCDNTYGSYKCACKKGYRLADDGHSCTDFDECKHFGNLCEQDCVNTDGSYECVCFRGYVFHNDISACVDVDECVLDNGGCAEDCDNTIGSYRCTCNKLGYRMVPGKTYCEEINECELGTASCSQICTNTDGGYECSCRNGYRLDHDLHNCLDIDECLVGVPGCWGGCINTFGSYRCQCDTGFRGIMNDTKCQDINECQYKNGGCSNQCINTHGSYYCKCPKGFVARDPHSYTCDDKDECK--DLPCDHSCSNTPGSFYCACNVGYKLVNRTK-CVDVNECQEKMDGCSYKCINTKGSFICQCPEGFITVGTQCIEALNGTGCKR 2319
C + C+ +C++ C+CY+G+ L DG C+ ++ C+S C+ C N GSY C C +G+ L D +CT D C + C+ +CVNTD SY C C +G+ + D C ++ C L+ GC +C N SY C C++ GY + P C ++ C C Q+C NT+ + C C G+ ++ DL C +D CL+ GC C+N S+ CQC G + C ++ C + GC + C+++ S+ C+C +G++ R+ TC KD C+ D C+H C N+ S+ C C G++L K C + C+ GC + C+N S+IC+C EGF+ A +G CK+
Sbjct: 283 CAMEDHNCEQLCVNVPGSFVCQCYSGYALAEDGKRCVAVDYCASENHGCEHECVNADGSYLCQCHEGFALNPDKKTCTKIDYCASSNHGCQHECVNTDDSYSCHCLKGFTLNPDKKTCRRINYCALNKPGCEHECVNMEESYYCRCHR-GYTLDPNGKTCSRVDHCAQQDHGCEQLCLNTEDSFVCQCSEGFLINEDLKTCSRVDYCLLSDHGCEYSCVNMDRSFACQCPEGHVLRSDGKTCAKLDSCALGDHGCEHSCVSSEDSFVCQCFEGYILRED-GKTCRRKDVCQAIDHGCEHICVNSDDSYTCECLEGFRLAEDGKRCRRKDVCKSTHHGCEHICVNNGNSYICKCSEGFVL-------AEDGRRCKK 648 HSP 2 Score: 216.083 bits (549), Expect = 8.620e-58 Identity = 135/378 (35.71%), Postives = 181/378 (47.88%), Query Frame = 1
Query: 1210 CRNMNGQCQHICIDDKNKVTCKCYAGFYLDTDGHSCIDINECSSLP--CQEVCDNTYGSYKCACKKGYRLADDGHSCTDFDECKHFGNLCEQDCVNTDGSYECVCFRGYVFHNDISACVDVDECVLDNGGCAEDCDNTIGSYRCTCNKLGYRMVPGKTYCEEINECELGTASCSQICTNTDGGYECSCRNGYRLDHDLHNCLDIDECLVGVPGCWGGCINTFGSYRCQCDTGFRGIMNDTKCQDINECQYKNGGCSNQCINTHGSYYCKCPKGFVARDPHSYTCDDKDECK--DLPCDHSCSNTPGSFYCACNVGYKLVNRTK-CVDVNECQEKMDGCSYKCINTKGSFICQCPEGFITVGTQCIEALNGTGCKRLKV 2328
C + C H CI+ C+C G+ L++D +C + C+ C+++C N GS+ C C GY LA+DG C D C + CE +CVN DGSY C C G+ + D C +D C N GC +C NT SY C C K G+ + P K C IN C L C C N + Y C C GY LD + C +D C GC C+NT S+ CQC GF + C ++ C + GC C+N S+ C+CP+G V R TC D C D C+HSC ++ SF C C GY L K C + CQ GC + C+N+ S+ C+C EGF A +G C+R V
Sbjct: 242 CSTLEHNCAHFCINIPGSYVCRCKQGYILNSDQTTCRIQDLCAMEDHNCEQLCVNVPGSFVCQCYSGYALAEDGKRCVAVDYCASENHGCEHECVNADGSYLCQCHEGFALNPDKKTCTKIDYCASSNHGCQHECVNTDDSYSCHCLK-GFTLNPDKKTCRRINYCALNKPGCEHECVNMEESYYCRCHRGYTLDPNGKTCSRVDHCAQQDHGCEQLCLNTEDSFVCQCSEGFLINEDLKTCSRVDYCLLSDHGCEYSCVNMDRSFACQCPEGHVLRSD-GKTCAKLDSCALGDHGCEHSCVSSEDSFVCQCFEGYILREDGKTCRRKDVCQAIDHGCEHICVNSDDSYTCECLEGFRL-------AEDGKRCRRKDV 610 HSP 3 Score: 171.4 bits (433), Expect = 2.458e-43 Identity = 111/338 (32.84%), Postives = 162/338 (47.93%), Query Frame = 1
Query: 1159 NGHKDCHDGSDEICSGQCRNMNGQCQHICIDDKNKVTCKCYAGFYLDTDGHSCIDINECSSL--PCQEVCDNTYGSYKCACKKGYRLADDGHSCTDFDECKHFGNLCEQDCVNTDGSYECVCFRGYVFHNDISACVDVDECVLDNGGCAEDCDNTIGSYRCTCNKLGYRMVPGKTYCEEINECELGTASCSQICTNTDGGYECSCRNGYRLDHDLHNCLDIDECLVGVPGCWGGCINTFGSYRCQCDTGFRGIMNDTKCQDINECQYKNGGCSNQCINTHGSYYCKCPKGF-VARDPHSYTCDDKDECKDLP--CDHSCSNTPGSFYCACNVGYKLVN 2157
+G+ DG + C + N C+H C++ C+C+ GF L+ D +C I+ C+S CQ C NT SY C C KG+ L D +C + C CE +CVN + SY C C RGY + C VD C + GC + C NT S+ C C++ G+ + C ++ C L C C N D + C C G+ L D C +D C +G GC C+++ S+ CQC G+ + C+ + CQ + GC + C+N+ SY C+C +GF +A D C KD CK C+H C N S+ C C+ G+ L
Sbjct: 307 SGYALAEDGKRCVAVDYCASENHGCEHECVNADGSYLCQCHEGFALNPDKKTCTKIDYCASSNHGCQHECVNTDDSYSCHCLKGFTLNPDKKTCRRINYCALNKPGCEHECVNMEESYYCRCHRGYTLDPNGKTCSRVDHCAQQDHGCEQLCLNTEDSFVCQCSE-GFLINEDLKTCSRVDYCLLSDHGCEYSCVNMDRSFACQCPEGHVLRSDGKTCAKLDSCALGDHGCEHSCVSSEDSFVCQCFEGYILREDGKTCRRKDVCQAIDHGCEHICVNSDDSYTCECLEGFRLAED--GKRCRRKDVCKSTHHGCEHICVNNGNSYICKCSEGFVLAE 641 HSP 4 Score: 170.629 bits (431), Expect = 4.214e-43 Identity = 103/287 (35.89%), Postives = 139/287 (48.43%), Query Frame = 1
Query: 1423 GHSCTDFDE-CKHFGNLCEQDCVNTDGSYECVCFRGYVFHNDISACVDVDECVLDNGGCAEDCDNTIGSYRCTCNKLGYRMVPGKTYCEEINECELGTASCSQICTNTDGGYECSCRNGYRLDHDLHNCLDIDECLVGVPGCWGGCINTFGSYRCQCDTGFRGIMNDTKCQDINECQYKNGGCSNQCINTHGSYYCKCPKGFVARDPHSYTCDDKDEC--KDLPCDHSCSNTPGSFYCACNVGYKLVNR--TKCVDVNECQEKMDGCSYKCINTKGSFICQCPEGFI 2268
H C+ + C HF C+N GSY C C +GY+ ++D + C D C +++ C + C N GS+ C C GY + C ++ C C C N DG Y C C G+ L+ D C ID C GC C+NT SY C C GF + C+ IN C GC ++C+N SYYC+C +G+ DP+ TC D C +D C+ C NT SF C C+ G+ L+N C V+ C GC Y C+N SF CQCPEG +
Sbjct: 239 AHMCSTLEHNCAHF-------CINIPGSYVCRCKQGYILNSDQTTCRIQDLCAMEDHNCEQLCVNVPGSFVCQCYS-GYALAEDGKRCVAVDYCASENHGCEHECVNADGSYLCQCHEGFALNPDKKTCTKIDYCASSNHGCQHECVNTDDSYSCHCLKGFTLNPDKKTCRRINYCALNKPGCEHECVNMEESYYCRCHRGYTL-DPNGKTCSRVDHCAQQDHGCEQLCLNTEDSFVCQCSEGF-LINEDLKTCSRVDYCLLSDHGCEYSCVNMDRSFACQCPEGHV 515 HSP 5 Score: 149.443 bits (376), Expect = 1.501e-36 Identity = 99/281 (35.23%), Postives = 135/281 (48.04%), Query Frame = 1
Query: 1435 TDFDECKHFGNLCEQDCVNTDGSYECVCFRGYVFHNDISACVDVDECVLDNGGCAEDCDNTIGSYRCTCNKLGYRMVPGKTYCEEINECELGTASCSQICTNTDGGYECSCRNGYRLDHDLHNCLDIDECLVGVPGCWGGCINTFGSYRCQCDTGFRGIMNDTKCQDINECQYKNGGCSNQCINTHGSYYCKCPKGFVARDPHSYTCDDKDECK-DLP-CDHSCSNTPGSFYCACNVGYKL-VNRTKCVDVNECQEKMDGCSYKCINTKGSFICQCPEGFI 2268
DF+ K G+ +D V ++ + VF + C CA C N GSY C C K GY + +T C + C + +C Q+C N G + C C +GY L D C+ +D C GC C+N GSY CQC GF + C I+ C N GC ++C+NT SY C C KGF +P TC + C + P C+H C N S+YC C+ GY L N C V+ C ++ GC C+NT+ SF+CQC EGF+
Sbjct: 199 VDFNTLKSIGSEPHEDHVFLVANFSQIETLTSVFQKKLCT---AHMCSTLEHNCAHFCINIPGSYVCRC-KQGYILNSDQTTCRIQDLCAMEDHNCEQLCVNVPGSFVCQCYSGYALAEDGKRCVAVDYCASENHGCEHECVNADGSYLCQCHEGFALNPDKKTCTKIDYCASSNHGCQHECVNTDDSYSCHCLKGFTL-NPDKKTCRRINYCALNKPGCEHECVNMEESYYCRCHRGYTLDPNGKTCSRVDHCAQQDHGCEQLCLNTEDSFVCQCSEGFL 474 HSP 6 Score: 132.494 bits (332), Expect = 3.492e-31 Identity = 76/240 (31.67%), Postives = 118/240 (49.17%), Query Frame = 1
Query: 1231 CQHICIDDKNKVTCKCYAGFYLDTDGHSCIDINECSSLP--CQEVCDNTYGSYKCACKKGYRLADDGHSCTDFDECKHFGNLCEQDCVNTDGSYECVCFRGYVFHNDISACVDVDECVLDNGGCAEDCDNTIGSYRCTCNKLGYRMVPGKTYCEEINECELGTASCSQICTNTDGGYECSCRNGYRLDHDLHNCLDIDECLVGVPGCWGGCINTFGSYRCQCDTGFRGIMNDTKCQDINE 1944
C+H C++ + C+C+ G+ LD +G +C ++ C+ C+++C NT S+ C C +G+ + +D +C+ D C + CE CVN D S+ C C G+V +D C +D C L + GC C ++ S+ C C + GY + C + C+ C IC N+D Y C C G+RL D C D C GC C+N SY C+C GF + +C+ E
Sbjct: 413 CEHECVNMEESYYCRCHRGYTLDPNGKTCSRVDHCAQQDHGCEQLCLNTEDSFVCQCSEGFLINEDLKTCSRVDYCLLSDHGCEYSCVNMDRSFACQCPEGHVLRSDGKTCAKLDSCALGDHGCEHSCVSSEDSFVCQCFE-GYILREDGKTCRRKDVCQAIDHGCEHICVNSDDSYTCECLEGFRLAEDGKRCRRKDVCKSTHHGCEHICVNNGNSYICKCSEGFVLAEDGRRCKKCTE 651 The following BLAST results are available for this feature:
BLAST of TCONS_00072702 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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