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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072807 ID=TCONS_00072807|Name=TCONS_00072807|organism=Clytia hemisphaerica|type=transcript|length=4259bpRun BLAST on NCBI protein sequence of TCONS_00072807-protein >TCONS_00072807-protein ID=TCONS_00072807-protein|Name=TCONS_00072807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1130bp MENNSPTNSVTSASEVPLIRSCKEVEMSDAIYLTSSSYGSLKETMAHGRSRun BLAST on NCBI transcript from alignment at scaffold_84:264869..282381- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072807 ID=TCONS_00072807|Name=TCONS_00072807|organism=Clytia hemisphaerica|type=transcript|length=17513bp|location=Sequence derived from alignment at scaffold_84:264869..282381- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_84:264869..282381- >TCONS_00072807 ID=TCONS_00072807|Name=TCONS_00072807|organism=Clytia hemisphaerica|type=CDS|length=3393bp|location=Sequence derived from alignment at scaffold_84:264869..282381- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072807 vs. Swiss-Prot (Human)
Match: TRPA1 (Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=1 SV=3) HSP 1 Score: 305.834 bits (782), Expect = 5.744e-86 Identity = 280/1059 (26.44%), Postives = 486/1059 (45.89%), Query Frame = 3
Query: 243 VEDLRRILSA-YSGNSHKISSLNKER---------LSALHYAVRYGHIQCVLDIIQADES--SVHRKGKHDVQPIHYAARFYRKTDDADENVIE---ILLKHGADIDAKDSFHYTPLQYAAVSGNVDALRILLNHFKENIEHADPSGVTALHSTCLKGEVECALLLIQNGAKVFQTDNKKMNAIHYAAKSDSRQILDPLIQLLEHDNNALINGESLSVLLNIANINGETPLHLAILEENLEACKILIAKGADVNLAKLRGLTPLHLACVKDSVEIVKLLVREGAR----VTGTDEIREIPLHKAARNDKVEIVKFLLETDPSQVNIEDLDKQTPLIESAAKNNFAITELLLSHGAGIEACDKFMKTSLFWAAE-----KNSLEVFKVLLQHIKDNELDLKELIEQRDTYEHTPLHIAAKGGHTEIVQILVEHGATVSTLNDQERTPLHTAADNGFIDVARVLIK--AKPSMIDEQNASGYTAVHLAAKSGKNEMLSFLLENNADNNPQDNHMLTPLALASYEGHKDCVKTLLHYRAAVEAR-DPNNKTSLFFAAAEGHAEVVKCLLDHGANVTHKDRTGQNLLDVAIKEGKVDVANVLLDRPEWKCVLRNKSFDESGALTSPMGKMIQSMPAMAKKVLDRCMISHENARQVAAERTRSVEITYEFIDDNFADEMLPADKPEHTYFDSVARIANEVLLRSSYSRRRAEEKMRERHNPPLSILCKKEDSDLLNHPVVSTLIEMKWKKFGKPVYYSKXXXXXXXXXXXSGYVLAVTPL--LPSRIFPKEGSNTT---ENCAPHIEKNFKLEDDVINVLFLIMGRYIVLALSCFQLLLEPIQMINRRFSYFCDLTNWLELTMYILALLYTFPNMDEAYLTNCDTVP--YKTSLGACAIFLAWCDLLLFIRKFTNVGIYVVMFIDVMXXXXXXXXXXXXXIVAFAMVFHSLIGPHKELFHTIGRSFAKTVAMTIGEFGYEELF---YAKETSRLPMITWFLFVLFCIVMTILLMNMLVGLAVDDIQSVLKKAELTRVKMQVELVLDVEKMLPMKFRKKWGQFTT 3308
ED + L + G+++ + + NK++ LHYA G I+ +++ I D S +H + P+H A ++N IE LL GA+ + ++ PL A N + +++LL H ++ +G TA+ C E +L++ GAK +++ IH AA S S++ ++ +++ E +G S + +N N TPLHLA+ +LE K+ + GA ++ + T +H A + + EIVKL++ + V TD E LH+A+ D E+ +L+ + +N D + ++PLI + A ++ I LLLS GA ++ D F + L + KN F + Q +KEL+ D TPLH A + G V L+ ++ + + +++PLH AA G I+ + L++ + +++E + G T +HLAAK+G ++++ LL+ A D++ T L AS G+ +K +L R D + T+L FAA EGHA+ V LL H A++ ++ + L +A+ + +V ++ W L+ S + G P+ +MI+ +P K +LD CM+ T +I+ NF P + ++++ + + L+ + + +LLNHPV + MKW +G + + L Y L + P+ L I P N+T + H E D N + +V S F E Q+ ++ +YF D++N LE +Y +++ P E +P + GA A++ W + LL++++F N GI++VM ++KT L+ ++ F ++AF + F+ L+ ++ F + S +T +M +G+ Y E F Y + P++++ V F I + I+LMN+L+GLAV DI V K A L R+ MQVEL +EK LP+ F +K Q +T
Sbjct: 29 TEDFKESLKVVFEGSAYGLQNFNKQKKLKRCDDMDTFFLHYAAAEGQIE-LMEKITRDSSLEVLHEMDDYGNTPLHCAV---------EKNQIESVKFLLSRGANPNLRNFNMMAPLHIAVQGMNNEVMKVLLEHRTIDVNLEGENGNTAVIIACTTNNSEALQILLKKGAKPCKSNKWGCFPIHQAAFSGSKECMEIILRFGEE------HGYSRQLHINFMNNGKATPLHLAVQNGDLEMIKMCLDNGAQIDPVEKGRCTAIHFAATQGATEIVKLMISSYSGSVDIVNTTDGCHETMLHRASLFDHHELADYLISVG-ADINKIDSEGRSPLILATASASWNIVNLLLSKGAQVDIKDNFGRNFLHLTVQQPYGLKNLRPEFMQMQQ--------IKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGAL-FLSDHNGWTALHHASMGGYTQTMKVILDTNLKCTDRLDEDGNTALHFAAREGHAKAVALLLSHNADIV-LNKQQASFLHLALHNKRKEVVLTIIRSKRWDECLKIFSHNSPGN-KCPITEMIEYLPECMKVLLDFCML----------HSTEDKSCRDYYIEYNFKYLQCPLE----------------------FTKKTPTQDVIYEPLTALNAMVQNNRIELLNHPVCKEYLLMKWLAYGFRAH----------MMNLGSYCLGLIPMTILVVNIKPGMAFNSTGIINETSDHSEI-----LDTTNSYLIKTCMILVFLSSIFGYCKEAGQIFQQKRNYFMDISNVLEWIIYTTGIIFVLPLFVE--------IPAHLQWQCGAIAVYFYWMNFLLYLQRFENCGIFIVMLEVILKTLLRSTVVFIFLLLAFGLSFYILLNL-QDPFSSPLLSIIQTFSMMLGDINYRESFLEPYLRNELAHPVLSFAQLVSFTIFVPIVLMNLLIGLAVGDIAEVQKHASLKRIAMQVELHTSLEKKLPLWFLRKVDQKST 1003 The following BLAST results are available for this feature:
BLAST of TCONS_00072807 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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