TCONS_00072872 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072872
Unique NameTCONS_00072872
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2147

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072872 ID=TCONS_00072872|Name=TCONS_00072872|organism=Clytia hemisphaerica|type=transcript|length=2147bp
ATTCAAGCGACTATTGAATGAACTATTGATCTCTCAATTCAGAGTATTGA
ATAAAATCTGGTACAGAATTTggcaaagattttcttttgagaAAATAAAG
CGTTACTTTGTTTTGCTTACATTTCTTGCTTGGTTACATCTTctcgttta
tttaattttttctgaattttagtgGTTTTTGTGCGATAATACGAAAATAt
ctttttctgtttcaaagACCTTACAAACAAGATGGGTTGGCCATCAAAGG
CTGTTATAAAATGGTGGGCTTTTTTTCATATGGTTACTTTCATACTCATC
AAAGACATCCAATCCATTTCTGAATGTCAATTCTATTATTGGGAAGTTAA
TCAAACATTACATAACGGTGGAACAAGCTTTGGACAAAACCAATGTAACA
GGAGATCCGGTGGCGCGGAAGATACGAATTTTCCaagatttgaaatttcc
tgGATCCCAGCTCCCCCATACTTGATTGATGATGAAGGCAGTGACACACC
GAAGGGATTTTTTTTCGATATGATTGAAGATTGGATTAAGACCTCGTGTA
CCAACTCACATTTGTCATGGAAACCCACGTCTATCAGATGGAGAAAACGG
CCTCAAGATAGTGTGAAGGATTTAGTGGAATGGTGTCGTGATAATGTTTA
TGATTGCTCAATGAGTGTTCCCGCTGTTggtgtttcaaagaaaaatggtG
GCAATGGTATCGTATATCATGAACCTTTTGCTGCGCTTTACAAGGTACCA
GATGTTGTTTACGTTACAGTCGAAGGTGAAACATGGCGAAATGCAATCGA
TAGTTTCAGCCAATCAGTGATCAATTTATGGCCATTTATCATGCTTTGTT
TATTGTGTGCTTTCATCTCTGGTGCTATTATTTGGTTTCTGGATACATGG
ACAAATGATCAAGATTTTCCTCGAGCATTTTTCAGCGGCACTTACCACGG
ATTTTGGTGGAGTTTTGTTTCCATGACAACCGTAGGTTACGGAGACAAGG
CACCTGTATCAATCGTTGCTCGAAGTTTTTCTGTTATCTGGATAATTATT
GGCATTCTCATGATTTGTATTTTGACGTCACTGATGTCCAATGGTCTTTC
TGCTGCTATTTATGTTCCTGAAAAAGTTGTCGTCAAAGCCAAGGTCGGAG
TTTTACCAGGGATTGAAACTGGAGACATCATTGTCAATGAGTTGGACGGA
GAAGTGAAAATGTTAAAAGATATAATCGAACTTGAAAACTGGTTAGCAAG
AGGTCTATTAACTGGATTTGTTATGGACATGTACACCTTCCAACACCATT
ATGAGGAACGCTTATCCAAACTCAATGTGAAATATGTTGTAGAAAGAAGA
TTCCCAATGGAAGATTACCATTACGGTATTGCTTTTCACCACATGGATCG
TCGAAACCCTCGATTGGCCAGCAAAGAAACATGGAGAACTTGCCTGGAAG
ATTACATCGAATATAATTATCATTTCAAAGAGAAAATGGAGAGACATTAC
AGACAATCGGTTTTGGCAAATCTCGACCCAGCTCTCTTGAAGCCATCTGA
ATCACCACCACTTGATCTTTTCGACATTAACTCTGGCTTTTTCCAAACCA
TCTTATATTATGTTCTTGGTACTGCTGCAACAATCCTCGTAATCGGTTTG
ATCTACGAATTTTTCCGTTTGGTCTTCTTCGGTGAGAATGGAATTGATTT
TAGCCAGAAATTGGGATTGGCTCATAATGCAGGTTACACGGCAGACGGAG
AGAGTGCAGAGCAAGCGAAAACAGATTCACCCAACAAAAAGATGACACGT
GAGGAGAGACAAATGGCCGAGTTGGTGGAACAAAGCATCCAGCGAACAGA
GGATAAAATGCAAGGCGTTGAACGAGATGTCAAGAATGAGATTCGGGAAA
TGGTTCGATCTATTCGTCGTCAAATCCACGAAATGAAACGTAAACAAGAT
AAAGACTATGGGTTGTGAGCCATAATATTCTCCTCAATTCATGAaaatta
tgacgtaatgttttctacgaaaATACCCCGATTTTTGCCAGTAGTAGCAT
TAAACATTGCatcataaatatcatgaatGGGGTGTGTCTAAATTTaaata
gcgcaccgcgctgaatctaaaaatagattttatttttgacataatNN
Run BLAST on NCBI

protein sequence of TCONS_00072872-protein

>TCONS_00072872-protein ID=TCONS_00072872-protein|Name=TCONS_00072872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=578bp
MGWPSKAVIKWWAFFHMVTFILIKDIQSISECQFYYWEVNQTLHNGGTSF
GQNQCNRRSGGAEDTNFPRFEISWIPAPPYLIDDEGSDTPKGFFFDMIED
WIKTSCTNSHLSWKPTSIRWRKRPQDSVKDLVEWCRDNVYDCSMSVPAVG
VSKKNGGNGIVYHEPFAALYKVPDVVYVTVEGETWRNAIDSFSQSVINLW
PFIMLCLLCAFISGAIIWFLDTWTNDQDFPRAFFSGTYHGFWWSFVSMTT
VGYGDKAPVSIVARSFSVIWIIIGILMICILTSLMSNGLSAAIYVPEKVV
VKAKVGVLPGIETGDIIVNELDGEVKMLKDIIELENWLARGLLTGFVMDM
YTFQHHYEERLSKLNVKYVVERRFPMEDYHYGIAFHHMDRRNPRLASKET
WRTCLEDYIEYNYHFKEKMERHYRQSVLANLDPALLKPSESPPLDLFDIN
SGFFQTILYYVLGTAATILVIGLIYEFFRLVFFGENGIDFSQKLGLAHNA
GYTADGESAEQAKTDSPNKKMTREERQMAELVEQSIQRTEDKMQGVERDV
KNEIREMVRSIRRQIHEMKRKQDKDYGL
Run BLAST on NCBI

transcript from alignment at scaffold_86:366486..376396+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072872 ID=TCONS_00072872|Name=TCONS_00072872|organism=Clytia hemisphaerica|type=transcript|length=9911bp|location=Sequence derived from alignment at scaffold_86:366486..376396+ (Clytia hemisphaerica)
ATTCAAGCGACTATTGAATGAACTATTGATCTCTCAATTCAGAGTATTGA
ATAAAATCTGGTACAGAATTTggcaaagattttcttttgagaAAATAAAG
CGTTACTTTGTTTTGCTTACATTTCTTGCTTGGTTACATCTTctcgttta
tttaattttttctgaattttagtgGTTTTTGTGCGATAATACGAAAATAt
ctttttctgtttcaaaggTATGTATCCTTGCtgttttacttttattttag
tccattctttctttttgagttttgtggTAAAGGAAACAAAACAGAAATAA
ATTTTACTGTGGagactctttaactcgaacttctataactTGAATGTTTC
CATACCTCGAAGTCTTcataattcgaacaagttttgACTTGTGGAGACAT
TACTATAgttgcccagctggcacacaacgttgtttcaaaactcatctaac
gttatatggacgttgtgaccgttagataaacgttgaaagaacgttgtgtg
ccagctgggtgttTTACTTTCACATCACATTATCCACCCTTgtatttttt
tacagaaaacgGCTTTTTCAAGACCatgcttaaaatattttttgctgatt
tgtgTGTTTGAATCAAGAAAATTTGCGAATATTTTGTGActtgtaaaatt
ttatttaaaaaaggaaGCATTCGTTTCTCAAGTAAAGATTGAATGGGTTA
AATCTTAAAATGTACTTTCTGGCCGAGGAAAATTCATCCCACGCTAAAAA
CACTCATAACATAATTACGTTATTTTCTATCTTTAGACCTTACAAACAAG
ATGGGTTGGCCATCAAAGGCTGTTATAAAATGGTGGGCTTTTTTTCATAT
GGTTACTTTCATACTCATCAAAGACATCCAATCCATTTCTGAATGTCAAT
TCTATTATTGGGAAGTTAATCAAACATTACATAACGGTGGAACAAGCTTT
GGACAAAACCAATGTAACAGGAGATCCGGTGGCGCGGAAGATACGAATTT
TCCaagatttgaaatttcctgGATCCCAGCTCCCCCATACTTGATTGATG
ATGAAGGCAGTGACACACCGAAGGGATTTTTTTTCGGTATATATTTCTTG
TTCCCTTCTACTGATCATATACTTACGACCGAAATGCTGTTTTggtgttt
taaaaaaaatgtacaagTTTGAATTAAGATTGTGATAAAACTAAAACATT
TATAGTCTCTTGTGGCGCTTTTTCGAAAGagatttttttcgaatgttCTT
CCTAACTTTTGATCACGTGAATCAagcttgtacacttttttttgaaacac
acGGTATGACAAGAATGAAGCTTGAAGTGTCAATCAATGGTAATGTCAAA
TTTCTGATGAAGCCCGAATTTcggaaaaaatatctttttgggcaatttgt
tgttttttttgattaattttaggTATGATCCACGTTTTAAGTTTCAGCTT
TATTAACCCATTTTTTCATTCTGATATCAATATCACAAAATTTCTACTTC
GAAATAAACTCCATGCTTTTTTCACAAATGACGTAATTTTGCATAAAAAC
CTGGCAGAATTTTAATTGAAATCGTACATTACCAAGACAGACTTATACAT
GAACGATGCCACTTGAAAAAACatgctttttttctttttttgaaaatggc
cTTGAAATCAGTCAAAATCCGTGTTATATCTTACATTGTTAGTGATTTCT
GACATAACGGAGCTTTGATCAAATTTCGCTCTCGTGTTCTTTGAATAAAT
CGTCTATTTATTTAGACGTTTTATaagaaaaagagcaaaatatattaaca
gggttcccagcggtcagggaaaacctggaaaacctggaaaagtcagggaa
tatttgtaaaatctctcaaaagtcagggaaaagtcagggaatttTTTTCA
GAATGCCTTGAATTTGATGGTTTTCAGGCAATCTTTGAATCTCCACCcac
caaccatggtgggtcctccAAATGATCACATTAATTACTAAAATCAGCAC
ACTTTGACTATTGCAAAGCTGACAgggttatttttgaaaagcgCGATAAT
TTCTTTACTACAACACGAAAAATTTGCCGTTTTTGGTCAGGGCAAAATGG
TCTTTTTTCATCTTGAGTCAGGGAAAAACTACCCTTTTCAACAGTTTTGT
CAGGGAAAAAGGGTGGATTTTAAAGCCAAAGTCAGGGAAAAACTACCCTT
TTCAACAGTTTTGTCAGGGAAAAAGGGTGGATTTTAAAGCCAAAGTCAGG
GAAAATCTGGGGAACTGCTGGGAAccctgtataagaacataaggcttcgg
tggccaaaatattaagaacaagttaagaacattttaaggcattgcagact
ctaaaacattcaatttattagaaaaatggacaaaaatactcacaaaatgg
tgaaaactcaagaacatgttaagaacatttttagacttaaaacttaaaaa
gttaagaacttccatggccttcaaaaattctgaatgttctttataaaaac
tGGTATTAATTAATTGAATTGctgatacacttttttttttataagaacca
gtaaatttttgttgaggctcggctgttcttatttttttggcacttcaaGC
CTCAAactgttcttatcctgttcttatttttagggctaatttgggggtat
ttttgggtttgaacccaaatttcattaatttggcccttattttacctaaa
actcagcaactccaggctcaggattgttcttaaattgttcttattttttg
gcatttttgagcctcattgttcttataaaaaaaaaagtgtagtaaaaaaa
tcacttttcattCATACCAGATATGATTGAAGATTGGATTAAGACCTCGT
GTACCAACTCACATTTGTCATGGAAACCCACGTCTATCAGATGGAGAAAA
CGGCCTCAAGATAGTGTGAAGGATTTAGTGGAATGGTGTCGTGATAATGT
TTATGATTGCTCAATGAGTGTTCCCGCTGTTggtgtttcaaagaaaaatg
gtGGCAATGGTATCGTATATCATGAACCTTTTGCTGTGAGTGCAATTTTA
AAGTATCTTGTCTTTGAGTAGAGATATTTTGTGTTACGTACCAaaatgaa
catataaacgactggacatccatctccttttgCATTTCTGCAGAAAGCAC
TGCTAGCATCATcgccgcctcgttaaaaacataaaatgaaacaatagatt
tttattGTGTAACTCTTGGGAAAATCACACAACAGTCCTACATACTTTTA
TatctgtttttttattttactatttttccggacaccctgtgtATGAATTC
TGTTccgatttttttttcggacaagCTATATGACACAGGTATCTCAACTT
TTCTTGCAGGCGCTTTACAAGGTACCAGATGTTGTTTACGTTACAGTCGA
AGGTGAAACATGGCGAAATGCAATCGATAGTTTCAGCCAATCAGTGATCA
ATTTATGGCCATTTATCATGCTTTGTTTATTGTGTGCTTTCATCTCTGGT
GCTATTATTTGGTTTCTGGTAAGCCTTCTCTTTTTACCACACCCCTGTTT
CGTTCAGTGTAATAgcactatttttttttttaattactcAAGCGCTCTTC
TCGTTTAAccttttacatgttttttttataagcataacgtttataaacaT
ACCAAGACCTGAATTTGTcgaaaaaataagcatattacaagcatattacT
GAGCTTGCTTTTGAGGTTTCTTCAAACggcattttaatttaaaaaaatac
aagcGTAAACGCGGCAATCGTCTACAACTTTCCTGAAAAATCTTTGTGTC
ATTACTTATTTCCCTATCCTCATGTATAGCAACGGCAGATTTTGGAAAAG
TTGGagaaaaataagcatatgataAACATACTTCGAGCCTGAGTCTATAA
TATCTCTAAGCATAACTGAGCTTGTTTCCCAAAGCAAaaaacatatgctt
ataaaaagaaaaaacatgtatttcaacagtttaaaaaactttttttgttt
gcaaaatatcacagaaaaaaatatgaaaaaacttCCAGAAAAAACATTGT
GTTATCCAACAGTTGGTGACAACATTTCTGTCATacaagttttttacttt
ttactaaTGATGGCACTCTGATGAGGCCGAAACGTTTAAAGAAAATACAG
TAGACTTTCGGTTATTCGAACCTCCAGGGGGGGTGAGATTTtacttcgaa
taactgaaaaattcgttttccCGCCAGATTCTCAACTTAACCTTAATTGG
GTGGACTTTCCTGAAGTAATTGAGGTATTGTGGTCCAATTGAGCGtaata
aacacaaagaaattgcTTAAATAGCGATATGTAGCCCTGAATATTGAAAC
ctgatttttaaaggaaaattattgTTCTCACTCGACGATCTCCCaataag
aaaaattcgaataactgAGGGTGATTTAGCCTATAATGTACCCCAAGGGG
AATAGAAATCGCTTCGAATAATTGAAAGTTCAAATAACTGAAGTTCGAAT
AACTGAGAGTGTTTTTGCCTAGGTTGAGTAAGCAGATCCAAGAGGAACGC
CATCTCACTTCAAATAGCCGAATTATTCGAATAAGTGCATGTTCGAATAA
CCGGAAGTCTACTGTAATTCAAGTTTAACATAGAACAAGAATGAAGCTTC
CGTGtttgaattttatttgaaaaatatttctttcatttctaGGATACATG
GACAAATGATCAAGATTTTCCTCGAGCATTTTTCAGCGGCACTTACCACG
GATTTTGGTGGAGTTTTGTTTCCATGACAACCGTAGGGTTAGTATGGATC
TAATCTCGTAACTGATCATCAATTCTGCGCAAACGTCGTTTTTCGGCCGA
AACAGTCAAATCCACGGTTCTTTTTTAATAAAGTTATTGNATCTCGTAAC
TGATCATCAATTCTGCGCAAACGTCGTTTTTCGGCCGAAACAGTCAAATC
CACGGTTCTTTTTTAATAAAgttattgttttttgttttgttttaaccAAT
CACTActctcaaaagctcatttaatattcattctAAATCTGGATGAAAGA
GATCAAAGCGTTGCGCCAACCTGGACCAGGTTCTCGTACAGAGCCATGTC
TTTTAGAGTGAATACGTGTCATGCGcggagtatcagaatctgctcggaga
taAGTATGAATCgatctataattcgaacaatcGTCTTCTCTGTAAACGTC
CTGGTTTTGTTAGtggtggcaaatttaaactagactaaaagttattttca
aaattttcaccaCTGGCAAAGAACTTGCTTCTGGCTTCATGACGTATATT
TTTCTACAGAAAAACTACAGCTTTTGCCGGTTGTGGCAAAAAACTTGGGT
TTTTCCGGTTAAACATTTTATGAATATCATGAGTTGCCAATCTAAACTAC
TTTTATTCGAAAGTTCGTGCAATTGGAACGGCTACTGGTTACATTCAACA
TGTGATAttcaccactgcaatgtcttctgacattacatcatggacccaac
agctgattggttgtaagtgacgtaaaatcagtcaatacgtcactttcaac
caatcagctgttcggtccgtggaagacattgcaatggtgcatatcatgaa
tacgctgtaagaaccagtaaattttacCTCGATTTTTGTTACCATAGTTA
CGGAGACAAGGCACCTGTATCAATCGTTGCTCGAAGTTTTTCTGTTATCT
GGATAATTATTGGCATTCTCATGATTTGTATTTTGACGTCACTGATGTCC
AATGGTCTTTCTGCTGCTATTTATGTTCCTGAAAAAGTTGTCGTCAAAGC
CAAGGTATTGTTTAGACCATTTTTATTACTAAATATGTAAGGTGCATata
tagactagtaaaccacggtgttgtatttcgctgcagcttACGCTTTGCAA
TAGGCTCACTATGTTTGCTGAATACATGTCTTTCCAAATCACTCTCCCGC
ggtaatttctatttttataaaCACTATTTttcgcgttcctgtgtccaaga
aAAGACAGAcgcttttttcaaaatggctgacTTTTCTTAACTCAACCTTG
TGAAAAATTGTTGATCCTTATGAATAAGAGGCTTTCTCGCTGTAAAGATT
ATGTTTTGATAATCAAAATGAGAATGCTTTGTGGTAATTtcagggggggt
catgcagttggtACCCGACATCATGATGTCTAactgcaaaattgaaaatt
tgagcgtACACCCACCACCCCTTAGCAGTTAGTACCCAAAAATACTAAGT
GTATTTGACAATTGACAGGTTGACACCACCCCTATTTGCTTAGTACCCTG
AAGTACTAAACGCATCTGACTACCGGAAGGCTGACACCACCCCTATTTGC
ACCTAGTATCCTGCAGTACTAATTGCATTTGACTATTGACAGGTTGGTAC
CACCCCCTATCCTGCCGGTTTAATGTTCTTGAGTAATTGCTGGCACTCAG
GGTAATCAATATTTGAAACCTGTCAGTACCTAACTAACCTTGGTGATTTT
TCTCTATTTGATTTATTATAATAAATACAAACCCCAACATATATGGTACA
AATCTGCAAAGCCTAACATGTTAAGTAAAGTCTGCCCACCATATTAGGTC
TAAAGTCCCAGAAATAAAATATCACTTTTGCATTGTTTGACAAACGACTA
AAAAAAATGGCTGACAAGCACAGCTAACAAAACGTAAATCATAATGACGT
AATTTAGTAGCGGCacacaatttcaaaacaagaaaccTTATGGGATCTGA
TGGGATTTAGATTCAAGCTTTGGTAAGTCTTGAGAGAGAAATAATTAAAG
CTCCTACATTGAAAAAGGCTATTGATATGGATAAGACCAGTCTTTTTTGC
AGTTACTACCCTAGAATTACCATttgattgacttgaaatttatgAGACAC
TACCCCTCatagcagttagtaccctaaaagtaccatttgattgacttgaa
atttatgAGACACCACCCTATACACAGCAGTTAGTACCCACAAGGTACTA
ACtgcaaattccaaaaatgatatAAGACCCACCACGGTaccaactgcatg
accccccccccctggtaaTTCGTTTGTTTCGGAAGAATTGTTTTTTACAA
AGAAAAGGGAAACATGAGATTATTTAGTGATTTTTTCTTGTTTAGGTCGG
AGTTTTACCAGGGATTGAAACTGGAGACATCATTGTCAATGAGTTGGACG
GAGAAGTGAAAATGTTAAAAGATATAATCGAACTTGAAAACTGGTTAGCA
AGAGGTCTATTAACTGGTAAGAAAAAACAGTCCATCCAGAATCCTTTCCA
GTATTGGgaaaaaaatattcgaatcCTTTTTCTTCTTGGTGTTAAATTAA
TTTCTTGCTCACTTGTGAGACaattttatcgttttttaaAAGAAGACAGG
TATAATGCTTGGAGTTTTTGTTCATAAAATGCGATTGAACATTCATTTTT
CCAGGCACCGAAATTCACGGCAAAACTGCCAAAGTCAGCACACGCAATCA
TGTTTTCTTTATCTCTTTGAATAGGATTTGTTATGGACATGTACACCTTC
CAACACCATTATGAGGAACGCTTATCCAAACTCAATGTGAAATATGTTGT
AGAAAGAAGATTCCCAATGGAAGATTACCATTACGGTATTGCTTTTCACC
ACATGGATCGTCGAAACCCTCGATTGGCCAGCAAAGAAACATGGAGAACT
TGCCTGGAAGATTACATCGAATATAATTATCATTTCAAAGAGAAAATGGA
GAGACATTACAGACAATCGGTTTTGGCAAATGTAAGCCTTTACTAAGCAT
AAAATATGCTTTTCCCCTATTATTTCAATCACTTCATTTATCATCCCGTC
ATCACTTCGGTCTAAATCGCAGACCACTATAGATACTtgaatctctctaa
ttcgatttcaaGGGGGGTTTTTCATCGAATGAGGAACGGTATCGAATAGA
GGACCGTCTTTTATGAGAgcttcttgttgacggtgattGTATCAATATAG
TATTGAATAGTAATACGTCGACTAGATAATAGTTGAAGCTTATCACCACT
TGAGTCTTATGATTAAGCCGGTGGTTTTGAATTCTaaaatcccacaattc
aatttTAGCTCGACCCAGCTCTCTTGAAGCCATCTGAATCACCACCACTT
GATCTTTTCGACATTAACTCTGGCTTTTTCCAAACCATCTTATATTATGT
TCTTGGTACTGCTGCAACAATCCTCGTAATCGGTTTGATCTACGAATTTT
TCCGTTTGGTCTTCTTCGGTGAGAATGGAATTGATTTTAGCCAGAAATTG
GGATTGGCTCATAATGCAGGTTACACGGCAGACGGAGAGAGTGCAGgtac
aaacttttttctttttataagaactattaAATAGTCGTTCAGTCTCGTCT
GTtcttattttggaattttttaaaagcaGGAACGTTCAGTTTTCTTTACT
CTGAGGTTGAGTTTTTAAATAATGGAGTGAGAAATTTcgcttttctttaa
agtttcgGAATAATATCGGGCAACGTTCAAGGATTGAGCCATGTCATGTC
ACAATCATGCCGCTTTCAATTTTTGCCTTCATAATTTgttgtaaaatctt
ttttttggtaaatttgtTAGTTGATTTTTTCCTACTCTTCTCCCCTATCA
AAAATCGGTTAAATTGGATAAATGATGGTATTCATAAAAATCATGGTTTC
TTAGTGCGCCTGGCATTTTTAAACGTTTATTTCCAGTGAAAATATTCCGC
CATTGAAAAGGTTGTCAAATTAAGGATGGTTTCATTTCCGAATGCGATTC
GAAATGCAGCTCGAAAGGGATTTTGTTatagaaaaataataacaccgtca
cactggtttgtagaggttaaaataccggcataatgacaaaaaataaggct
atATACATTCACTGTCTGATTTTAATATACCGTTtccccgtctctttttt
cgtcaaatttaCGGTATTACGGAATTtaggccaatcccgtcacaccatAA
AAGTACAACTCCCCCGCCactttagactggagtcgtttataatgcgtgta
atactaataataccaatactaataataataacaataataatacgggattt
agtttgtataaacgactggaagaatccggtgttcgaGCCTTATAGAttca
ggggctagctacgcagaaacttgcgtagcgagaaaacaatttatcaagca
acaacaaactctcaaaacgaaatcaactcaaatgaaaaactttcaataca
caaatccacactNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNagaattattttgagcaggaaaaaattataattgcaatattgacactt
ttcttttgtttggagttagtgcacaaaggtttctagacgactaaaattgt
tccgccctttattactttttgctttatttctactatgtatgaattagtcg
tctagcttgctagactaccgCCACTTCGAAGGGTTTAAATACTCATTCTT
TTCTCTTTCTATTCGATTCACAGAGCAAGCGAAAACAGATTCACCCAACA
AAAAGATGACACGTGAGGAGAGACAAATGGCCGAGTTGGTGGAACAAAGC
ATCCAGCGAACAGAGGATAAAATGCAAGGCGTTGAACGAGATGTCAAGAA
TGAGATTCGGGAAATGGTTCGATCTATTCGTCGTCAAATCCACGAAATGA
AACGTAAACAAGATAAAGACTATGGGTTGTGAGCCATAATATTCTCCTCA
ATTCATGAaaattatgacgtaatgttttctacgaaaATACCCCGATTTTT
GCCAGTAGTAGCATTAAACATTGCatcataaatatcatgaatGGGGTGTG
TCTAAATTTaaatagcgcaccgcgctgaatctaaaaatagattttatttt
tgacataatNN

Coding sequence (CDS) from alignment at scaffold_86:366486..376396+

>TCONS_00072872 ID=TCONS_00072872|Name=TCONS_00072872|organism=Clytia hemisphaerica|type=CDS|length=1737bp|location=Sequence derived from alignment at scaffold_86:366486..376396+ (Clytia hemisphaerica)
ATGGGTTGGCCATCAAAGGCTGTTATAAAATGGTGGGCTTTTTTTCATAT
GGTTACTTTCATACTCATCAAAGACATCCAATCCATTTCTGAATGTCAAT
TCTATTATTGGGAAGTTAATCAAACATTACATAACGGTGGAACAAGCTTT
GGACAAAACCAATGTAACAGGAGATCCGGTGGCGCGGAAGATACGAATTT
TCCaagatttgaaatttcctgGATCCCAGCTCCCCCATACTTGATTGATG
ATGAAGGCAGTGACACACCGAAGGGATTTTTTTTCGATATGATTGAAGAT
TGGATTAAGACCTCGTGTACCAACTCACATTTGTCATGGAAACCCACGTC
TATCAGATGGAGAAAACGGCCTCAAGATAGTGTGAAGGATTTAGTGGAAT
GGTGTCGTGATAATGTTTATGATTGCTCAATGAGTGTTCCCGCTGTTggt
gtttcaaagaaaaatggtGGCAATGGTATCGTATATCATGAACCTTTTGC
TGCGCTTTACAAGGTACCAGATGTTGTTTACGTTACAGTCGAAGGTGAAA
CATGGCGAAATGCAATCGATAGTTTCAGCCAATCAGTGATCAATTTATGG
CCATTTATCATGCTTTGTTTATTGTGTGCTTTCATCTCTGGTGCTATTAT
TTGGTTTCTGGATACATGGACAAATGATCAAGATTTTCCTCGAGCATTTT
TCAGCGGCACTTACCACGGATTTTGGTGGAGTTTTGTTTCCATGACAACC
GTAGGTTACGGAGACAAGGCACCTGTATCAATCGTTGCTCGAAGTTTTTC
TGTTATCTGGATAATTATTGGCATTCTCATGATTTGTATTTTGACGTCAC
TGATGTCCAATGGTCTTTCTGCTGCTATTTATGTTCCTGAAAAAGTTGTC
GTCAAAGCCAAGGTCGGAGTTTTACCAGGGATTGAAACTGGAGACATCAT
TGTCAATGAGTTGGACGGAGAAGTGAAAATGTTAAAAGATATAATCGAAC
TTGAAAACTGGTTAGCAAGAGGTCTATTAACTGGATTTGTTATGGACATG
TACACCTTCCAACACCATTATGAGGAACGCTTATCCAAACTCAATGTGAA
ATATGTTGTAGAAAGAAGATTCCCAATGGAAGATTACCATTACGGTATTG
CTTTTCACCACATGGATCGTCGAAACCCTCGATTGGCCAGCAAAGAAACA
TGGAGAACTTGCCTGGAAGATTACATCGAATATAATTATCATTTCAAAGA
GAAAATGGAGAGACATTACAGACAATCGGTTTTGGCAAATCTCGACCCAG
CTCTCTTGAAGCCATCTGAATCACCACCACTTGATCTTTTCGACATTAAC
TCTGGCTTTTTCCAAACCATCTTATATTATGTTCTTGGTACTGCTGCAAC
AATCCTCGTAATCGGTTTGATCTACGAATTTTTCCGTTTGGTCTTCTTCG
GTGAGAATGGAATTGATTTTAGCCAGAAATTGGGATTGGCTCATAATGCA
GGTTACACGGCAGACGGAGAGAGTGCAGAGCAAGCGAAAACAGATTCACC
CAACAAAAAGATGACACGTGAGGAGAGACAAATGGCCGAGTTGGTGGAAC
AAAGCATCCAGCGAACAGAGGATAAAATGCAAGGCGTTGAACGAGATGTC
AAGAATGAGATTCGGGAAATGGTTCGATCTATTCGTCGTCAAATCCACGA
AATGAAACGTAAACAAGATAAAGACTATGGGTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045222XLOC_045222Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072872-exon-scaffold_86-1491911889:366486..366702TCONS_00072872-exon-scaffold_86-1491911889:366486..366702Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1510915933:366486..366702TCONS_00072872-exon-scaffold_86-1510915933:366486..366702Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1575043694:366486..366702TCONS_00072872-exon-scaffold_86-1575043694:366486..366702Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1491911889:367272..367571TCONS_00072872-exon-scaffold_86-1491911889:367272..367571Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1510915933:367272..367571TCONS_00072872-exon-scaffold_86-1510915933:367272..367571Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1575043694:367272..367571TCONS_00072872-exon-scaffold_86-1575043694:367272..367571Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1491911889:369306..369520TCONS_00072872-exon-scaffold_86-1491911889:369306..369520Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1510915933:369306..369520TCONS_00072872-exon-scaffold_86-1510915933:369306..369520Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1575043694:369306..369520TCONS_00072872-exon-scaffold_86-1575043694:369306..369520Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1491911889:369845..370003TCONS_00072872-exon-scaffold_86-1491911889:369845..370003Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1510915933:369845..370003TCONS_00072872-exon-scaffold_86-1510915933:369845..370003Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1575043694:369845..370003TCONS_00072872-exon-scaffold_86-1575043694:369845..370003Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1491911889:371178..371272TCONS_00072872-exon-scaffold_86-1491911889:371178..371272Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1510915933:371178..371272TCONS_00072872-exon-scaffold_86-1510915933:371178..371272Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1575043694:371178..371272TCONS_00072872-exon-scaffold_86-1575043694:371178..371272Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1491911889:372133..372289TCONS_00072872-exon-scaffold_86-1491911889:372133..372289Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1510915933:372133..372289TCONS_00072872-exon-scaffold_86-1510915933:372133..372289Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1575043694:372133..372289TCONS_00072872-exon-scaffold_86-1575043694:372133..372289Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1491911889:373631..373751TCONS_00072872-exon-scaffold_86-1491911889:373631..373751Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1510915933:373631..373751TCONS_00072872-exon-scaffold_86-1510915933:373631..373751Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1575043694:373631..373751TCONS_00072872-exon-scaffold_86-1575043694:373631..373751Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1491911889:374010..374266TCONS_00072872-exon-scaffold_86-1491911889:374010..374266Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1510915933:374010..374266TCONS_00072872-exon-scaffold_86-1510915933:374010..374266Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1575043694:374010..374266TCONS_00072872-exon-scaffold_86-1575043694:374010..374266Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1491911889:374594..374831TCONS_00072872-exon-scaffold_86-1491911889:374594..374831Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1510915933:374594..374831TCONS_00072872-exon-scaffold_86-1510915933:374594..374831Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1575043694:374594..374831TCONS_00072872-exon-scaffold_86-1575043694:374594..374831Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1491911889:376009..376396TCONS_00072872-exon-scaffold_86-1491911889:376009..376396Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1510915933:376009..376396TCONS_00072872-exon-scaffold_86-1510915933:376009..376396Clytia hemisphaericaexon
TCONS_00072872-exon-scaffold_86-1575043694:376009..376396TCONS_00072872-exon-scaffold_86-1575043694:376009..376396Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072872-proteinTCONS_00072872-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:366486..376396 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0270563	0.0688707	0.126674	0.0857545	0.238251	0.321526	0.323873	0.756215	0.543847	50.32	45.1993	26.0176	26.6508	0.8618	0.783505	36.4976	25.5873	0.463369	1.5097	0.579256	1.82023	2.04594	2.6136	1.89526	0.349419	0.0748392	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR005821Ion_trans_dom
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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