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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072900 ID=TCONS_00072900|Name=TCONS_00072900|organism=Clytia hemisphaerica|type=transcript|length=2033bpRun BLAST on NCBI protein sequence of TCONS_00072900-protein >TCONS_00072900-protein ID=TCONS_00072900-protein|Name=TCONS_00072900-protein|organism=Clytia hemisphaerica|type=polypeptide|length=612bp YDSFQKVCCELREIRLLEIGSELKMDPEKQRLTENNFELQENEAYLAEEERun BLAST on NCBI transcript from alignment at scaffold_86:581976..590234+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072900 ID=TCONS_00072900|Name=TCONS_00072900|organism=Clytia hemisphaerica|type=transcript|length=8259bp|location=Sequence derived from alignment at scaffold_86:581976..590234+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_86:581976..590234+ >TCONS_00072900 ID=TCONS_00072900|Name=TCONS_00072900|organism=Clytia hemisphaerica|type=CDS|length=1839bp|location=Sequence derived from alignment at scaffold_86:581976..590234+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072900 vs. Swiss-Prot (Human)
Match: S22A3 (Solute carrier family 22 member 3 OS=Homo sapiens GN=SLC22A3 PE=1 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 1.828e-54 Identity = 148/537 (27.56%), Postives = 248/537 (46.18%), Query Frame = 2
Query: 320 DEFLIHIGQFGRAQKLLLLMFYLLEVPHSYHTLSWFFTGHSPP--W-----------RCSLTN----NLT------------RAQC------------NSTAVYDIGDPF--YEQRC---FMERDAWNYTLPRSYSIVTEWDLVCDKKEYPFLANSLMWIGWAAGAFVLGFVSDKYGRKKVLMISFSGMITFAFTCAFLHQFWIYALMAFLIGFCQGGIALTIYVMASEFVGPKYKSLASGALTGLTYTLSLCLLSFQSWLMPEWRKLLVVTSFPYLILLFSFGLMPESIRWLRLNLKSQECEDVLRSICQFNGR----KWPDIVLRPPLKTEDRNGSLFSLFTHSRLATNTLVQGFVWFVIGQVYFGISLASDQLGGNIYRDFVLTSLVGIPGNILVIVLTNKYGRKPTLIGSMAVGSFSCIGVSLINPLSELIWLRVTFGMIGQLCLALAFSSMYSWSLELMPTIIRSQAIGLLGVLIRFGGSSAPWVSQWLEHFHYTLPFAVMGSLALVASGLCVRLPETLNVPTIETIDDAKR 1780
DE L +G+FGR Q+ + L+ L V ++ + F G P W RC + N T R +C ++T+ DP + R R W Y S +IV+E+DLVC L +++ +G+ GAF LG+ +D+YGR + ++S G+ AF F ++ + FL G G +T YV+ +E VG K + + G + + +TL + +L ++ +P W+ + + + P + L + ++PES RWL K + +LR I + NG+ + +I + E N S L ++ TL+ F WF VY G+ + +GGN+Y DF ++ +V +PG +L+++ + GR+ S V +C+ + + + WLR T +G+L + +AF +Y + EL PT +R+ + L L FGG AP++ L LP + G LA + GL + LPET + ET+DD ++
Sbjct: 5 DEALQRVGEFGRFQRRVFLLLCLTGVTFAFLFVGVVFLGTQPDHYWCRGPSAAALAERCGWSPEEEWNRTAPASRGPEPPERRGRCQRYLLEAANDSASATSALSCADPLAAFPNRSAPLVPCRGGWRYAQAHS-TIVSEFDLVCVNAWMLDLTQAILNLGFLTGAFTLGYAADRYGRIVIYLLSCLGVGVTGVVVAFAPNFPVFVIFRFLQGVFGKGTWMTCYVIVTEIVGSKQRRIV-GIVIQMFFTLGIIILPGIAYFIPNWQGIQLAITLPSFLFLLYYWVVPESPRWLITRKKGDKALQILRRIAKCNGKYLSSNYSEITVT---DEEVSNPSFLDLVRTPQMRKCTLILMFAWFTSAVVYQGLVMRLGIIGGNLYIDFFISGVVELPGALLILLTIERLGRRLPFAASNIVAGVACLVTAFLP--EGIAWLRTTVATLGRLGITMAFEIVYLVNSELYPTTLRNFGVSLCSGLCDFGGIIAPFLLFRLAAVWLELPLIIFGILASICGGLVMLLPETKGIALPETVDDVEK 534 The following BLAST results are available for this feature:
BLAST of TCONS_00072900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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