TCONS_00073008 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073008
Unique NameTCONS_00073008
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073008 ID=TCONS_00073008|Name=TCONS_00073008|organism=Clytia hemisphaerica|type=transcript|length=2434bp
ttgtttgttCTTTTATGTTAAGTCAGGTTcaccaaatcgaaaaattataC
ATTTTCATAACGTATCaaaataagttttgaaaacatGTATGGGGCGatta
ttttgttgatattttgcaCTTGGAATGAACAGTTTTCGTATGTGTTCGGA
GAAACAAGCGACATTGGTTATGGGATGCTGACAAGAAGACAGGGAGTCGA
GCTTGATCACAAAGAGATTGTCGATCTTGGAAATGGAAAACGAGTAGAAG
TTATAACCAAAGCATTGAAGCCATTACTGTTTGAGATTCCAGACTTTCTA
TCTGAAGAAGAGTGTGATCATATCATCAAACGAGCCCTGGATCCACAAGA
AGGTGGAATTAAATTATTCGACAGCCAGGCTAAAGGAGGATTGACTTCTA
ATGAAACACTCAAAGCTGTTGGAGttaATGGTCAATCATTAGGATGGCTT
GGTCGCTACGAAGGTTGGGATAAGGATGGCGATGGAAACATTACAATCGA
AGAGATCATCTCGATTGCACATTTAACAAAGACTTTGGTCATGGAAGAAC
CCGATATTCGAGATATATTTAAAGCTGTTGGACAACCAAGCATCCTAGAT
GATGATATAATTACAAAAGAAGAATTTCAGTTGTTGAGCACATTAGCAGT
TGAGAAATATCTTGACAATTTATGGCAAAACCATCCACGTTTCAAACCAA
GGACCAGTCAACAAGCATGGTTATTCATGGAACAATGGCTTGACCCTACA
GTGCATAACATCAGAGAAAGaTTGGTACGATTAAGTGGATTACCAAGAGA
AATTATATACGGTGGTGAAATGCTACAGGTGGTACATTACACGACAAACG
GTCATTATCATGCACACCACGATAGTGAGACACACTTAAGCGATCATGTT
CCTTGTTGTCATCAATACTCTGGTGATACTCTGGGAAGCACTGGTGAATG
CAAGTTGTGCAGGTTTTTGACATTCATGATGTATCTAAATGATGTGGAAG
ATGGAGGACAAACTGCTTTCCCAATGGCTCATGAAGAAGTCTTCGATACT
GACCAAATTCGTCAACACGGTAACGCAAGTACTGATAAATACAATCTCTC
ATACGGCTGCAAGATTGCTAATCTAGTTGTCAAGCCGAAGAAAGGAAAAG
CTGTTTTATGGTATAACCATTTGGTCAACCAAACCGATGGATGGATGGGC
GAGTTAGATCCATTTAGTTTGCATGGTGGATGTGATGTGAAAAGTGGGGA
AAAATGGATCTCCAACATGTGGATTACAGCTCCCTTTGGGAAAGATGTTC
AAACACCGAGTATATTTTTGAATAGGAAAGACTTTAAAATGGCTGAAGAG
AAATTCAaggaacaaaataaaaaagaagaacgaCAAAAAGAAGAATTATA
AACACTCAGACGCCAGTTCAAGTAGCTTTGCTATGACAGAGCATGATGTA
CAGGGATTATGTTTCAAGGCCTGAATAAGCTAGAGAGGAAACTCTTCGGT
ttaaaatgaagccacttattacCCATCTATCTAAAACGCGGGAACCGCGT
GGAAACAAAATAAGCGCTGAATTCGATTGGTCGACCTAAATCTGGtgcaa
atcttaaggcttcacaTTTTCTTACTTATTAACGTAatgttgaagattcc
tctctagccccttcaaggctttaaactcaatttgGCAGGCCAGTCGATTT
TTATATTCAAGTCATTATAAATTCATAACTTGAAAGAATCGTTACTACTA
AAAATTTGCTCTTTTTCAAGCGTTTTGCGCCTTTTTGGGCTACGCTTATG
AATCGATAGACGGTTTAGAATGAGTGTTTTAATATCAACAGTGTCTTGAA
ATAATATGATTTAATCTAAATTTCGAATTTGTTCCTACAATAATTAcaaa
atataattatttttgagtgTCCAAATAAAAGCGGTGAGATCACCAATGAT
TTATCTAACTTACCCCTAACAATCCAGAAgttcccttaacaatcaaaTCG
ATCTGATTGGTCGAAACCCTAAATTATGATGTATTTGACCCAAATGAAAC
CAATGAGTGTTAAGAAAAAGCGTTCGATTGTTAAGGGAaattttggattg
ttataggtaagtACGGTACGAAATTGCTTTCGTCAGACATCTTTGCCGTG
GATGTGTGTTCTATTTCGTAATCCGTTTACCAAAAGCCACCTCAATACTA
ATGATACGATGCTGTATTCATTCGGGAGTACACCTTCCATTGGTTGTTGA
AAACATTCGTTTCAACTAAGTCGATAATTTGAATGTTACTTATCTTCAGA
ATTAGTTGAAagattttaaagggacataacagtacttgctaaacttgtaa
acaaactgtatgcagcggatacaaaatcaaaacaaatgtcacatgtcaaa
ataaaaaatcaaaccaaatatggctaattttgat
Run BLAST on NCBI

protein sequence of TCONS_00073008-protein

>TCONS_00073008-protein ID=TCONS_00073008-protein|Name=TCONS_00073008-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp
MYGAIILLIFCTWNEQFSYVFGETSDIGYGMLTRRQGVELDHKEIVDLGN
GKRVEVITKALKPLLFEIPDFLSEEECDHIIKRALDPQEGGIKLFDSQAK
GGLTSNETLKAVGVNGQSLGWLGRYEGWDKDGDGNITIEEIISIAHLTKT
LVMEEPDIRDIFKAVGQPSILDDDIITKEEFQLLSTLAVEKYLDNLWQNH
PRFKPRTSQQAWLFMEQWLDPTVHNIRERLVRLSGLPREIIYGGEMLQVV
HYTTNGHYHAHHDSETHLSDHVPCCHQYSGDTLGSTGECKLCRFLTFMMY
LNDVEDGGQTAFPMAHEEVFDTDQIRQHGNASTDKYNLSYGCKIANLVVK
PKKGKAVLWYNHLVNQTDGWMGELDPFSLHGGCDVKSGEKWISNMWITAP
FGKDVQTPSIFLNRKDFKMAEEKFKEQNKKEERQKEEL
Run BLAST on NCBI

transcript from alignment at scaffold_86:738360..747724-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073008 ID=TCONS_00073008|Name=TCONS_00073008|organism=Clytia hemisphaerica|type=transcript|length=9365bp|location=Sequence derived from alignment at scaffold_86:738360..747724- (Clytia hemisphaerica)
TTGTTTGTTCTTTTATGTTAAGTCAGGTTCACCAAATCGAAAAATTATAC
ATTTTCATAACGTATCAAAATAAGTTTTGAAAACATGTATGGGGCGATTA
TTTTGTTGATATTTTGCACTTGGAATGAACAGTTTTCGTATGTGTTCGGA
GAAACAAGCGACATTGGTTATGGGATGCTGACAAGAAGACAGGGAGTCGA
GGTAAAATACAAATTACAAACTATCGTCGTGTTTTTTATAAGTTTTCTGT
TTCCACGCTAAGATTCTTGTCACGTTTTCAGAATCTTTACGCTATTTTTT
CAAGGATAGCCGGCATTAGATTGGAAAGGGTTTGTTTCTACGAAAAATCT
TGTGTTTACTTACTAAACTGCCTAACTTTCCGAAGCTCATTTTTCAACGA
CCCAAAGTCCTGGTCTTTTTCCGCTAGTAGAGTGGCAAAGGAATCTGGGA
AAAGTGGGAAACTGTAAAAAACGGCGGTATATAAGAATAAGGCTTCGAAG
GCCAAAATATTGAGAACATGTTAAGAACATTTTCAGGCTTCACAGACTCT
AAAACACCCAATTACTTATAAAATAGTACAAAAATACCCATGGAATGGTG
AAAATACGACCATTTTAAGAACATTTTATGCCTTTTATGCTAACAAAATG
TTCTTATAAAAAACGTTTATATCCCATACAAGGGAAGGGTATCAAGAGGT
ATCAAGTGATTTCAATTTTTATTTCCAATTTCTGTCAAATCTTCTTCAAA
GAAAGAACAAAAATTGAAAAGTTGACGATTTTCAAGGATTTATCAACAAC
CTTGTCTCATAGTGGAACTGTTTCCCACAGTGGGATGGAATTTTTATCGA
AATTCCAATGGGGATAAATATTCCAAAAATTCCACACCAATCCAAAAGCT
TTTCGAACTTTGGACTCTTTACGATTGATATGTTTTGGCAAATTATCAAC
TAAAAACTCCGTTATATTTCTTATCAGCTTGATCACAAAGAGATTGTCGA
TCTTGGAAATGGAAAACGAGTAGAAGTTATAACCAAAGCATTGAAGCCAT
TACTGTTTGGTAAGTTGCTACTTGGAAAAATGTTGTTAGAATTGTTGTTG
CATATAAAAATCAATATATATTACAATCACAGCAAAAAGTCCTTTAAATC
AAAATTTTGGCATTTGAAGGTCAAAATCTTTATCCTGAATCACCATTTTA
TCATCAGTTTATTTACTTAATAAACTTATTTTGGGAGGGTCCATTGAAAA
TATAGAGATACTCACATCAAATGGTAGATTTGGTATAGAAAAACAACCCT
GTCTCACAGACCTGTTAGAACTTCGTCCCACAGGGACGACGAAAATTTCT
ATTTTTCGTGCATGTGAAAAAAGCATCATGGCGGAAATGACGTAACTTAA
CAAAACATTCAACATTTTTCTTTGCACAGAGATTCCAGACTTTCTATCTG
AAGAAGAGTGTGATCATATCATCAAACGAGCCCTGGATCCACAAGAAGGT
GGAATTAAATTATTCGACAGCCAGGCTAAAGGAGGATTGACTTCTAATGA
AACACTCAAAGCTGTTGGAGGTGAATATTTTCTTTAAGAAAGTAATGGTT
CTGCAGCTAAAGGATTTTCAGCAATGGGCTTTTCCAGAAAAAAACCCGTA
TACCCCCTGTTGAGGAGGTCCATCATTTTGTGGCTGGAAATGCTGCAAGC
CCCTAGAATTCCAGGCAATTTCAGGCTTAAACCCCTCTGGAATTCTGAAT
TTTAGTAGGATTTAAAAGGCTACCCCCATGGAATTCCAGTTATTTTTGAC
AGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTGTATCTCCC
TATAGAATTCCGCCACATATCAAACCTTACCCCCTTGGAACGGAAATGGA
CCTCCTCAACAGGGGGTATACGGTTTTTTCTGGAAAAGCCCAATGTGGCT
ACTAAGATTTCACCACCATTTTAAACGAAGATAAGAAAACCTCTGAGATG
CTTTTTGCCAAATTTTTGCTAAATTTTCTCAGAAAAGCATTTTTTAACAG
GAACTTTTTATGTGCTTTCTCAATTTTACAATTTTAAGGCTTTTTCTCAG
ACTCAAAATTGAATCTACCCCACCAACTCCCGTTCAAAAGTAAATCGAGT
CTTTGGGTGCACTCATCCCTTAACATATCAGAAAGATACTGCGGCGGCCG
CCTAACCGAGAATTCGACCACCTCAAATGGTGTTAAAAAGTGCGATAAAG
ATGTTAAAGGTTTTGTTAATTATTTTTTATTTAGTTAATGGTCAATCATT
AGGATGGCTTGGTCGCTACGAAGGTTGGGATAAGGATGGCGATGGAAACA
TTACAATCGAAGAGGTAGCCAATCCAAACCTTAAAGGGACATAAAAGTAG
TAAAATGTAAACATTGCGCAAACCACGTGTCATTAAAGAGAACAATTAAA
ATCACGTGTCCAAAACAAACTTGTAAAACAATTGAAACAATCAAAATTAG
CCATATTTGTTTTGATTTTTTACTTTGGCATTGTGTATCCCGCTGCATAA
GGTTTGTTTACAAATGTCGTCAGTACTTTTATGCCCCTTTAAAAAACCAT
AGACGTAGCGAGATATAACAATATATATTCTAATCTTCTAAGATCTTCCT
TTTCTTGTCTAAAACATTATTGACAAAACATTCATTATGTACGGTCTTAT
CATGCAGTACTTAGACAAAAATCCTCCCCATAAAGAGCACACTAGACACC
CGAAAGCTATATCGAGTTAAAAGTAGGCCTTCACGATTCAAATAAGCTTG
TAAAAGATTAAGACTGAAGTTAAAAACTGTGGCTAGATGGCCTAGAAACT
GTATTTATCTCGCAGTATTTGTAATAATGTGGTTTTTAACAATGCGCATG
TTCATACCATGGTAAATTAATTTCAGATCATCTCGATTGCACATTTAACA
AAGACTTTGGTCATGGAAGAACCCGATATTCGAGATATGTAAGTTGATTC
TAAAATACCAAAAGTTTCGGATGTGAATAAATTTAGGTCCCCAGTTATAA
ACAGTTTCGAGTATTTTGATGTGACTTCGTACGAAACTTGTATTTTAAGT
AAGTTTTAGAGTCCACAAAGCATTACCTAGATCGTTTTTAAAAGATGTTC
TTATTTTTTTTCACCTACAGTATGTGGCCCCCAAAACGGCGATCAAATTT
GAAATTTCTCTCAAATCTAGAGGAAAAGAGATTTTACAAAAATTTTTGCT
GCATGAAAACCTTTAACATCTCTTCTTTATTTCCTGGAAGTTCTTTTTCA
AAATTTTCAATTTCAACAATATTTTTCAATCGCTTAAAGATAGGTAGCTC
TTTTTTAGTGGCCCCCAAAACGGAGGTTTGAAATTTTAGCGATTTCTCGA
GATATCTTTAAGATATGAATACAAAATTTTAACCACAGTTTTGAAATATG
ATTTAGAGGGTTTTGGGCATAGCTTTATTTGATAAAATTTTTACAGTATA
CCCCTGGTTGTCAAAATGCAGGTTTGGGGCCCCCAAAACGGAGGTGTAGT
TAAAATCAAATTATTAAGCCCAGTGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGTCTCCGTTTTGGGGGCCA
TATACTGTAACTATTTTGTTTTAAACATTTTAGATTTAAAGCTGTTGGAC
AACCAAGCATCCTAGATGATGGTGAGTGTTGATTCACTATTGTGCAGCCA
ACAAATTAGTACACAGTTTTGCCATTTAAAAAGCGGGTTTCACGGTTGGC
AGAGGAGCGGAATCGGCCCTTTTTTGAGCGGAGTGGTCGAATTAGACGAA
AATGTTGACGGAATTTCGGTAATCGGGTCCTCTATCGGAGATGGAAAATT
GGCCAATTTTAGTGCGGAAAAGGGAATTTAGCCAACAAATTGGCGCAATT
TCGGAATTGGCAAAAGTATTCAAAATTTAAAGTGAATTCGAAGAATTTTT
GACAAAACCCTTGAATTTCGAATGAATTTTCGGTGCCGGAATTTTGGTTC
TTTTTAGACGGTTTGCGGAAATTGGGGGAAAATTGCGTAATTGCCCCCCC
TCCTGAGACTATCATTATCAACCAACCAATCCATAGTTTTGGTTGAAGCT
TGACCGTTCTAATTTTTTTAACCTTCAGGCGCTCTTATGCTCATAAGAAC
ATTTTCTACTTACACAATCCATAGTTAAATTGACCCATTTTATTCTTTGA
TTTCCATACCATAGATATAATTACAAAAGAAGAATTTCAGTTGTTGAGCA
CATTAGCAGTTGAGAAATATCTTGACAATTTATGGCAAAACCATCCACGT
TTCAAACCAAGGACCAGTCAACAAGCATGGTTATTCATGGAACAATGGCT
TGACCCTACAGTGCATAACATCAGAGAAAGGTATTTGGTATCTTAAATTC
TGGCCACCCATCCTTTAAGTAACCAATTTTTTGGAAAGTATTTTCAAAAA
TTCTTTCAATCATACCAATGATTAGGGATCACGCATTTATTCCAGAATCG
GTATTTTAGGTAACCAAAAGCAATTATATATCAGGTATTTGGTATCTCAT
GTCTCAGAGGTCTCTGGTACCCTATGAGCTCATTACCGCAATGTTCACCC
TAACTGGACTTTGAAACAGCTACTACAAATGAAGCTCCAGATTCATAAGG
AAAAACCACTATATAAAAAAGAGATTTGCAAGAAAAAATTGACGAGTTTC
CACCTGAAAATGTAATGAACAAACAAACTATTTGAACATTTTTTTAGATT
GGTACGATTAAGTGGATTACCAAGAGAAATTATATACGGTGGTGAAATGC
TACAGGTACTTTTATGTTGAAACTTGAAATTTGTAGATGATACTTAAATC
CATGAGTTCCAGGAAATTTCATCTCTTTAAAGTATGCTTAAATGTCATTT
TTGCAAGTCTATTCATGATATGCAACCCTACAATAAATAACTTCTGACAT
TGCGTCGGTCATTTTATTACCAAGTTTTTGTCTCAGATGGGACTTTAAAC
AACAAATTAGGCAAAGTTTTTCAATTTTTCACAATTTTGATGAACTTAGA
GATGGAAAAACCTCTTTTTGCTGAGACGGAAGAACTTTGTACACTGCATC
TGATTGGTTGTAAATATGTATAGAGGGGGGTTTGTACTTTTACGGTGTGA
CGGGATTGTGACGGGATTGGCCCTTTATTAGTAAGGTATTACGGGATTTG
ACGAAAAAAGAGACGGGAAAACGGTATTTTAAAATCAGACGGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTCAATTTTCGGGATTC
CGGAATTCAGCAACCCCCCCCCCCTATAGATCGATTCGACAAAATCCAGT
TGGGGACTCCAAACAAACCTCAAGCAAGCTGCCTGTTCCTAACTGACAAA
AGTTTCACCCACAAAACGATAAAACTAAACGGGGCTAAACGGGAAATATT
TGAAGATTTTTGAGCTATCAAGGAATTACTAAATCATCCTGTAGATATTC
TTTCTACCATTTCTTAGAAAAGATGGCTGATCGTGGGTGAAAATGACGTC
ACACGGAATCGGTCTATTGGGTAAAAACCAATAAAATAAAATACGTTCTT
TTTATTATGACAGGTGGTACATTACACGACAAACGGTCATTATCATGCAC
ACCACGATAGTGAGACACACTTAAGCGATCATGTTCCTTGTTGTCATCAA
TACTCTGGTGATACTCTGGGAAGCACTGGTGAATGCAAGTTGTGCAGGTA
GGTAGTGTCTGTTTCCCCATGGGTAATCGACAAGTGAGAGAGGATTTCTT
TTGCACTGTAAAATTGAGACAAGCTGGAGTTTTTACAAGCTCTTATTTGA
TTTGGTTGGTCGTTAAGATGTAATAAAAGAATCTCATTACTTTTTCTAAA
GAACGCGTCATCTTTATCACTTTAATTGACCAATTAGTGAAGTATCTTGT
AAAAGCTCCAGCTCATCCCGTAAAATTATCTATTCGTAATACAAAGAGAT
CATCGCTGTGTCATCAATTCTGCTACAAAAATTTTGCCCCCTCCTGTTGT
TTACACTACTGATACATCGTTGCATATTAGTTGGGACATTTAAAGTCTAA
AAAGTTTGTAGTCTAAAGCTAAATTTGTGCAAATGTTGGTATCGGGCTAC
TTCTCATTGAATTTTATAAGCTTAAAATAACTCCATCATTGTGAAATATT
AAATCGTTTTATCCAAGTCATCAGGCTAAAAAAACAGTGACCCCCAAAAA
TATCTGAAGAAGATTCTTGCAACTTTCTTGTTCACAACACGTGGTTGCAT
CTTATGATGTTACAGATCCTAAGGGTCGCAGGGTCGCCCCTTACTAAAAT
AGACATGTTAATTATGGCAGAACATTGTTTTGTCAGGCTCAAGTTTTACC
ATGTTTTACTCCTGTTTTGGTTTATAGTCATAAGACCTGAAGAGCTTGTA
ATGATTATAACTGAAAATATAATTTGTTTTTTGACAGGTTTTTGACATTC
ATGATGTATCTAAATGATGTGGAAGATGGAGGACAAACTGCTTTCCCAAT
GGCTCATGAAGAAGTCTTCGATACTGACGTGAGATTACTTTAGATACTAA
GCTACGATACATTTTTTACAAATATGAAGCCGTCACAACGTCCATACAAT
GTTCATAAGATGGATTGGGTGTAATGTCTAGGTAACAATTAATAGGGGAA
AATTTGGCTAAGCAATTATCCCAGAAAGTTTTTTTTGTTTCGGCAAAAAT
CATTGTTCGCCAGAGGACTAAATAACTGACACTTGACTTCCATTAACTTA
TTATCATCGGCGTTGTGAAAATCTTTTTTTACAGCAAATTCGTCAACACG
GTAACGCAAGTACTGATAAATACAATCTCTCATACGGCTGCAAGATTGCT
AATCTAGTTGTCAAGCCGAAGAAAGGAAAAGCTGTTTTATGGTATAACCA
TTTGGTCAACCAAACCGATGGATGGATGGGCGAGTTAGATCCATTTAGTT
TGCATGGTGGATGTGATGTGAAAAGTGGGGAAAAATGGATCTCCAACATG
TGGATTACAGCTCCCTTTGGGAAAGATGTTCAAACACCGAGTATATTTTT
GAATAGGAAAGACTTTAAAATGGCTGAAGAGAAATTCAAGGAACAAAATA
AAAAAGAAGAACGACAAAAAGAAGAATTATAAACACTCAGACGCCAGTTC
AAGTAGCTTTGCTATGACAGAGCATGATGTACAGGGATTATGTTTCAAGG
CCTGAATAAGCTAGAGAGGAAACTCTTCGGTTTAAAATGAAGCCACTTAT
TACCCATCTATCTAAAACGCGGGAACCGCGTGGAAACAAAATAAGCGCTG
AATTCGATTGGTCGACCTAAATCTGGTGCAAATCTTAAGGCTTCACATTT
TCTTACTTATTAACGTAATGTTGAAGATTCCTCTCTAGCCCCTTCAAGGC
TTTAAACTCAATTTGGCAGGCCAGTCGATTTTTATATTCAAGTCATTATA
AATTCATAACTTGAAAGAATCGTTACTACTAAAAATTTGCTCTTTTTCAA
GCGTTTTGCGCCTTTTTGGGCTACGCTTATGAATCGATAGACGGTTTAGA
ATGAGTGTTTTAATATCAACAGTGTCTTGAAATAATATGATTTAATCTAA
ATTTCGAATTTGTTCCTACAATAATTACAAAATATAATTATTTTTGAGTG
TCCAAATAAAAGCGGTGAGATCACCAATGATTTATCTAACTTACCCCTAA
CAATCCAGAAGTTCCCTTAACAATCAAATCGATCTGATTGGTCGAAACCC
TAAATTATGATGTATTTGACCCAAATGAAACCAATGAGTGTTAAGAAAAA
GCGTTCGATTGTTAAGGGAAATTTTGGATTGTTATAGGTAAGTACGGTAC
GAAATTGCTTTCGTCAGACATCTTTGCCGTGGATGTGTGTTCTATTTCGT
AATCCGTTTACCAAAAGCCACCTCAATACTAATGATACGATGCTGTATTC
ATTCGGGAGTACACCTTCCATTGGTTGTTGAAAACATTCGTTTCAACTAA
GTCGATAATTTGAATGTTACTTATCTTCAGAATTAGTTGAAAGATTTTAA
AGGGACATAACAGTACTTGCTAAACTTGTAAACAAACTGTATGCAGCGGA
TACAAAATCAAAACAAATGTCACATGTCAAAATAAAAAATCAAACCAAAT
ATGGCTAATTTTGAT

Coding sequence (CDS) from alignment at scaffold_86:738360..747724-

>TCONS_00073008 ID=TCONS_00073008|Name=TCONS_00073008|organism=Clytia hemisphaerica|type=CDS|length=1317bp|location=Sequence derived from alignment at scaffold_86:738360..747724- (Clytia hemisphaerica)
ATGTATGGGGCGATTATTTTGTTGATATTTTGCACTTGGAATGAACAGTT
TTCGTATGTGTTCGGAGAAACAAGCGACATTGGTTATGGGATGCTGACAA
GAAGACAGGGAGTCGAGCTTGATCACAAAGAGATTGTCGATCTTGGAAAT
GGAAAACGAGTAGAAGTTATAACCAAAGCATTGAAGCCATTACTGTTTGA
GATTCCAGACTTTCTATCTGAAGAAGAGTGTGATCATATCATCAAACGAG
CCCTGGATCCACAAGAAGGTGGAATTAAATTATTCGACAGCCAGGCTAAA
GGAGGATTGACTTCTAATGAAACACTCAAAGCTGTTGGAGTTAATGGTCA
ATCATTAGGATGGCTTGGTCGCTACGAAGGTTGGGATAAGGATGGCGATG
GAAACATTACAATCGAAGAGATCATCTCGATTGCACATTTAACAAAGACT
TTGGTCATGGAAGAACCCGATATTCGAGATATATTTAAAGCTGTTGGACA
ACCAAGCATCCTAGATGATGATATAATTACAAAAGAAGAATTTCAGTTGT
TGAGCACATTAGCAGTTGAGAAATATCTTGACAATTTATGGCAAAACCAT
CCACGTTTCAAACCAAGGACCAGTCAACAAGCATGGTTATTCATGGAACA
ATGGCTTGACCCTACAGTGCATAACATCAGAGAAAGATTGGTACGATTAA
GTGGATTACCAAGAGAAATTATATACGGTGGTGAAATGCTACAGGTGGTA
CATTACACGACAAACGGTCATTATCATGCACACCACGATAGTGAGACACA
CTTAAGCGATCATGTTCCTTGTTGTCATCAATACTCTGGTGATACTCTGG
GAAGCACTGGTGAATGCAAGTTGTGCAGGTTTTTGACATTCATGATGTAT
CTAAATGATGTGGAAGATGGAGGACAAACTGCTTTCCCAATGGCTCATGA
AGAAGTCTTCGATACTGACCAAATTCGTCAACACGGTAACGCAAGTACTG
ATAAATACAATCTCTCATACGGCTGCAAGATTGCTAATCTAGTTGTCAAG
CCGAAGAAAGGAAAAGCTGTTTTATGGTATAACCATTTGGTCAACCAAAC
CGATGGATGGATGGGCGAGTTAGATCCATTTAGTTTGCATGGTGGATGTG
ATGTGAAAAGTGGGGAAAAATGGATCTCCAACATGTGGATTACAGCTCCC
TTTGGGAAAGATGTTCAAACACCGAGTATATTTTTGAATAGGAAAGACTT
TAAAATGGCTGAAGAGAAATTCAAGGAACAAAATAAAAAAGAAGAACGAC
AAAAAGAAGAATTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045282XLOC_045282Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073008-proteinTCONS_00073008-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073008-exon-scaffold_86-1575043694:747524..747724TCONS_00073008-exon-scaffold_86-1575043694:747524..747724Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1575043694:746666..746747TCONS_00073008-exon-scaffold_86-1575043694:746666..746747Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1575043694:746155..746295TCONS_00073008-exon-scaffold_86-1575043694:746155..746295Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1575043694:745311..745390TCONS_00073008-exon-scaffold_86-1575043694:745311..745390Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1575043694:744687..744748TCONS_00073008-exon-scaffold_86-1575043694:744687..744748Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1575043694:743404..743441TCONS_00073008-exon-scaffold_86-1575043694:743404..743441Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1575043694:742695..742860TCONS_00073008-exon-scaffold_86-1575043694:742695..742860Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1575043694:742270..742327TCONS_00073008-exon-scaffold_86-1575043694:742270..742327Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1575043694:740828..740961TCONS_00073008-exon-scaffold_86-1575043694:740828..740961Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1575043694:739997..740087TCONS_00073008-exon-scaffold_86-1575043694:739997..740087Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1575043694:738360..739740TCONS_00073008-exon-scaffold_86-1575043694:738360..739740Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1510915933:747524..747724TCONS_00073008-exon-scaffold_86-1510915933:747524..747724Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1510915933:746666..746747TCONS_00073008-exon-scaffold_86-1510915933:746666..746747Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1510915933:746155..746295TCONS_00073008-exon-scaffold_86-1510915933:746155..746295Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1510915933:745311..745390TCONS_00073008-exon-scaffold_86-1510915933:745311..745390Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1510915933:744687..744748TCONS_00073008-exon-scaffold_86-1510915933:744687..744748Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1510915933:743404..743441TCONS_00073008-exon-scaffold_86-1510915933:743404..743441Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1510915933:742695..742860TCONS_00073008-exon-scaffold_86-1510915933:742695..742860Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1510915933:742270..742327TCONS_00073008-exon-scaffold_86-1510915933:742270..742327Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1510915933:740828..740961TCONS_00073008-exon-scaffold_86-1510915933:740828..740961Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1510915933:739997..740087TCONS_00073008-exon-scaffold_86-1510915933:739997..740087Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1510915933:738360..739740TCONS_00073008-exon-scaffold_86-1510915933:738360..739740Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1491911889:747524..747724TCONS_00073008-exon-scaffold_86-1491911889:747524..747724Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1491911889:746666..746747TCONS_00073008-exon-scaffold_86-1491911889:746666..746747Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1491911889:746155..746295TCONS_00073008-exon-scaffold_86-1491911889:746155..746295Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1491911889:745311..745390TCONS_00073008-exon-scaffold_86-1491911889:745311..745390Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1491911889:744687..744748TCONS_00073008-exon-scaffold_86-1491911889:744687..744748Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1491911889:743404..743441TCONS_00073008-exon-scaffold_86-1491911889:743404..743441Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1491911889:742695..742860TCONS_00073008-exon-scaffold_86-1491911889:742695..742860Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1491911889:742270..742327TCONS_00073008-exon-scaffold_86-1491911889:742270..742327Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1491911889:740828..740961TCONS_00073008-exon-scaffold_86-1491911889:740828..740961Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1491911889:739997..740087TCONS_00073008-exon-scaffold_86-1491911889:739997..740087Clytia hemisphaericaexon
TCONS_00073008-exon-scaffold_86-1491911889:738360..739740TCONS_00073008-exon-scaffold_86-1491911889:738360..739740Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:738360..747724 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.777956	0.741309	0.555465	0.717674	1.37385	0.333554	5.37842	8.02022	6.89116	5.44742	5.16147	9.48218	13.5311	13.6231	0	0	9.66192	9.35658	2.71736	2.10269	4.11786	6.40593	0.666717	0.145427	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006620Pro_4_hyd_alph
IPR005123Oxoglu/Fe-dep_dioxygenase
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0031418L-ascorbic acid binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016491oxidoreductase activity
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0031418 L-ascorbic acid binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
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BLAST of TCONS_00073008 vs. Swiss-Prot (Human)
Match: P4HTM (Transmembrane prolyl 4-hydroxylase OS=Homo sapiens GN=P4HTM PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 4.219e-49
Identity = 137/437 (31.35%), Postives = 211/437 (48.28%), Query Frame = 1 
Query:   13 LC*VRFTKSKNYTFS*RIKISFENMY--GAIILLIFCTWNEQFSYVFGETSDIG-------------YGMLTRRQGVELDHKEIVDLGNGKRVEVITKALKPLLFEIPDFLSEEECDHIIKRALDPQEGGIKLFDSQAKGGLTSNETLKAVGVNGQSLGWLGRYEGWDKDGDGNITIEEIISIAHLTKTLVMEEPDIRDIFKAV-GQPSILDDDIITKEEFQLLSTLAVEKYLDNLWQNHPRFKPRTSQQAWLFMEQWLDPTVHNIRERLVRLSGLPREIIYGGEMLQVVHYTTNGHYHAHHDSETHLSDHVPCCHQYSGDTLGSTGECKLCRFLTFMMYLNDVEDGGQTAFPMAHEEVFDTDQIRQHGNASTDKYNLSYGCKIANLVVKPKKGKAVLWYNHLVNQTDGWMGELDPFSLHGGCDVKSGEKWISNMWI 1275
            LC  R   S+ Y     + + F ++Y    + LL+F  ++        E+SD G              G LTR +G+++ H+  V L   +   + T +LKPLLFEIP FL++EEC  II  A   Q  G+     Q    L + E  +A+      +  L  +   D++ DG++ + E+++   L     M    I++++ A+   P    D +++ +EF  +      KY+ +          R S   WL+  +     +  IR+R++RL+ L  EI+   E LQVV Y   GHYHAH DS     + + C H           E   CR++T + YLN+V  GG+T FP+A    +D   + Q      D  +    C   NL VKP++G AV WYN+L +   GW+G++D +SLHGGC V  G KWI+N WI
Sbjct:   49 LCKPRGICSRAYFL---VLMVFVHLYLGNVLALLLFVHYSNG-----DESSDPGPQHRAQGPGPEPTLGPLTRLEGIKVGHERKVQLVTDRDHFIRTLSLKPLLFEIPGFLTDEECRLIIHLA---QMKGL-----QRSQILPTEEYEEAMST--MQVSQLDLFRLLDQNRDGHLQLREVLAQTRLGNGWWMTPESIQEMYAAIKADPD--GDGVLSLQEFSNMDLRDFHKYMRSHKAESSELV-RNSHHTWLYQGEGAHHIMRAIRQRVLRLTRLSPEIVELSEPLQVVRYGEGGHYHAHVDSGPVYPETI-CSHTKLVANESVPFETS-CRYMTVLFYLNNVTGGGETVFPVADNRTYDEMSLIQD---DVDLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPD-GQGWVGDVDDYSLHGGCLVTRGTKWIANNWI 458
The following BLAST results are available for this feature:
BLAST of TCONS_00073008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P4HTM4.219e-4931.35Transmembrane prolyl 4-hydroxylase OS=Homo sapiens... [more]
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