TCONS_00073046 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073046
Unique NameTCONS_00073046
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1775

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073046 ID=TCONS_00073046|Name=TCONS_00073046|organism=Clytia hemisphaerica|type=transcript|length=1775bp
GAAAGATAgtagatatttttgaaaacttaaagaaaaatattttcgaaaat
gaaTTCGGAAATGGAGCTCGATAAAAAAGACGAATCATTCCCGTCTCCAG
GGGAACGAGTATTCCAAAGTTGGGAACTAGTCatgaatattttcagttat
ttGCCATGGAGTGAAGTATGTAGATTACGTAACCTAAGTGCAGAAACTCG
TTATGCTTGTCAGTACAGTGTTCATGAAATAACTGATCCAGAAGATCATA
ACATCGAAGAGAACGATTTTTACGATTTCCTTCTTGCCCTTGGCTCAATA
GGATGTCACAAACTCAATAAAATCGATGTTTTATCCTCACCAAACCTCAG
CAATAACATTCTACCCATTCTTAAGTTTTGTGGCAACATCGAACACTTAG
CGTTGACAAAAAATCACGGAGGACAAGATATTTACATGAGCATGATCTAT
AACACTGATGTTCGTCATTTGGCAATTCAAGCAACCGAAGTGCATTATTT
TCAAGATGTCGACTTGATTGATATCTTGCTGATTTTACAGAATATCACTG
AACTCGAAATCACCAACGCTGGTATCACAGACATCGCTTTAGCTGAAATC
AGTGACGAAATCACCAATCTAACTCATCTCAATATAAGCGGTTGTATTGA
TGTCACGGATGTCGGGTTACGCGAAATCCTTGATAAATGTAAAGAATTAA
AACACTTGAACGTTCAAAATACACCAACAATGAGAGAAGACTGCGTCCAA
GCATTCATTTTCAACTATACTTTAGAGTATTTCAATGCATTAGAGACAAA
CCTACTTCCTGATGATGCTCAAAGACTTAAGCGCCATTTCGATGCTTTTC
ATAGACCATATGAGTTTCTATGGAGTCGTACAAAGGTTGTTAATCAGACT
TACGAGTTAGAGACTGTCCGCGAGGTCAATCGGAGGCCATTATTCACTGA
TTTCCCACCATGGAccaatgaagaaattttcaattctaTGCATATTGATG
AACATCTGTGGAATAATGCTGAAACGATTACAAGACGACCGGTTGAATTT
ACAGCTCAACAATACTTGATTAATTTAAGGAACGCCTGTAATCAACCAGT
ATTCAATCCTTCAACAATGGTCATTCATGATTGGTCAGAACAAGCTTTTA
AAGGTGGCCCGAAAGACTGGTGGAGTTCTGATCAAAAGATCGACAGCCTA
gcacgaaaattaaaaattaaacgaAGCGATCCTAAACTAAAAGAAACTGA
cgaatacaaaaaaattattgaagatgAAAACTTCAGAGTAGACAAAGTCG
CATTCCCAGAAGAAAATAACTCTAAATTTGGCATAGATGGAATTTTAGGA
AATCCAGATGATACAGATTTAGGCTGGAAACGCATTTATGAAGTACAGGA
CAATTTGAAATCGTTGAAAAAGGAATATGAGGTCTTGATGGAAGAATTTC
AAACTTTCGAACAAAAATAATTAGCCCGGGAAATAAttattgaaattcaa
tagaaaacattttagttaaaaattgtatatataccttaaattttaaatta
tatttatatagctttaaataaattttacttatttctacaaaaaagaacct
ttttaagaatattttaaaatagtttttgagGTACGCTCAATATCTCCATT
AGACGAAGAATGAACCAGAAAGCCCTGCTTTAACTAGCTCATTCGTCTAC
TcatacactcattttgttttataagcatacggttaATTTTagctgaagct
cactatgcttaagtaaagctcaatt
Run BLAST on NCBI

protein sequence of TCONS_00073046-protein

>TCONS_00073046-protein ID=TCONS_00073046-protein|Name=TCONS_00073046-protein|organism=Clytia hemisphaerica|type=polypeptide|length=473bp
MNSEMELDKKDESFPSPGERVFQSWELVMNIFSYLPWSEVCRLRNLSAET
RYACQYSVHEITDPEDHNIEENDFYDFLLALGSIGCHKLNKIDVLSSPNL
SNNILPILKFCGNIEHLALTKNHGGQDIYMSMIYNTDVRHLAIQATEVHY
FQDVDLIDILLILQNITELEITNAGITDIALAEISDEITNLTHLNISGCI
DVTDVGLREILDKCKELKHLNVQNTPTMREDCVQAFIFNYTLEYFNALET
NLLPDDAQRLKRHFDAFHRPYEFLWSRTKVVNQTYELETVREVNRRPLFT
DFPPWTNEEIFNSMHIDEHLWNNAETITRRPVEFTAQQYLINLRNACNQP
VFNPSTMVIHDWSEQAFKGGPKDWWSSDQKIDSLARKLKIKRSDPKLKET
DEYKKIIEDENFRVDKVAFPEENNSKFGIDGILGNPDDTDLGWKRIYEVQ
DNLKSLKKEYEVLMEEFQTFEQK
Run BLAST on NCBI

transcript from alignment at scaffold_86:932896..936533-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073046 ID=TCONS_00073046|Name=TCONS_00073046|organism=Clytia hemisphaerica|type=transcript|length=3638bp|location=Sequence derived from alignment at scaffold_86:932896..936533- (Clytia hemisphaerica)
GAAAGATAGTAGATATTTTTGAAAACTTAAAGAAAAATATTTTCGAAAAT
GAATTCGGAAATGGAGCTCGATAAAAAAGACGAATCATTCCCGTCTCCAG
GGGAACGAGTATTCCAAAGTTGGGAACTAGTCATGAATATTTTCAGTTAT
TTGCCATGGAGTGAAGTATGTAGATTACGTAACCTAAGTGCAGAAACTCG
TTATGCTTGTCAGTACAGTGTTCATGAAATAACTGATCCAGAAGATCATA
ACATCGAAGGTATACTCTTTTACTATATTATTGTTTACAATAGTACTACG
GGTATCAGTTACTTTAATTGTAGAAATTTTAGCGAGACTAATTTTAGCGT
TTTAGCGAGTTTTCCCTATTTTCGCTAAAATAAATCTCGCTAAAACACGC
CGAATCGACAGATCGCTAAAATTTATCCGCGCAAAATTTCTGTTAATATT
GGCTTGATACATTTTTATCAATAGGAAGGGTTTCAGTGCAAAGAAATGCT
AGAAAACGAGTTCAGTCAATTAATGTAATACGAGTGTTCGCTAAAATTTA
TCCACGCGAAATTTTTTGAAATCGTGATACGCTAAAATAAATCCAAAAAA
AATCAAGATTTTCCTGACTCACTAATATACGCTAAAATTAGTCTCGCTAA
AATTTGTACGATTAATAATGAAAAGGTAGTATGGGTCTCGATGAGAAGTA
ATACGGATAGTAATTAACGGCTAAAAAGTCCCACTTTCCTTCCGTCTTCC
TTGAGAGGAGATTCGAATAAGTAGTAGCCGGTCACCGAGAGCACTACTTA
TCTGGATTCAGTCATTCTTGATACGAGATCGTCTTTAAGAACCGTTTCTT
TTATAAATTGATACTTTTTATCCTTTTCATGTTTTTTATGAAAAATCTCT
TGATCATTGTTATACAATCTGACCCAATGAAGTTAGATCCAAAAAAATGA
TAAACTATCTTCACTAAAATAGTAACCTTTCACCATTGCAACTTTGTTCA
TTATTTCAGAGAACGATTTTTACGATTTCCTTCTTGCCCTTGGCTCAATA
GGATGTCACAAACTCAATAAAATCGATGTTTTATCCTCACCAAACCTCAG
CAATAACATTCTACCCATTCTTAAGTTTTGTGGCAACATCGAACACTTAG
CGTTGACAAAAAATCACGGAGGACAAGATATTTACATGAGCATGATCTAT
AACACTGATGTTCGTCATTTGGCAATTCAAGCAACCGAAGTGCATTATTT
TCAAGATGTCGACTTGATTGATATCTTGCTGATTTTACAGGTACAGTAGG
TTCTAGCCTCTTATTTGATAGTCAATTACCAGTATGCAAATTTTATTGCT
GTTAAAAGTTGAGATTTCATGAAATCTTTACACCCTAAAGGAAAATCATT
GTCTTTCATTACATGATCGGCCGCGAAAAGTTGATGCTCGTCAAAAGAAT
TTCTTCCTCAGAAGTTTATGTCGCAATTATCGTGATTTTCCAACCTCATG
AAAGTTTTTGTTTGTTAAAGCTTGAACAGTCACCGCCGAAATATATTGAC
AATTTTTGGTATTTTAACGTTTTACAGAATTTAAAGCTTGGGAGAGAATT
GCGATTTAGTACTTCCACATTGTTTCATTGGATTTTTCGATTTTGGAGAG
GTTAAGTGGCTTCCAGGCTTTATTACTCTCAGGAACAGTGGAACATTGAA
ACATTTTCGAGCTATTAGTTCCTGAAGTGTTAAGTCGTATGTTTAAACTC
TACTTTTCAAGCGTACTTTACTTTTTTTATTTTTTATTTTATTTTATTTA
TTTGATAAAGCAGGTTAAAAAACGCAGACTAAGCTGATGTGGACCTGCAA
CTAAGGACTATATTACAAATGAAAAATAGTTAAAATGTATTAAAATTATG
TATATGCTGTAAATAGAGATAAAAGAATTATTAGTGCAGAGATTTCTGAA
GGATAGTTAAACAGAGAAAAAAAGTAAAAACTTGATAAGCTTATGTGGCT
TAAGTGAGATTTAGTTTTGTTATAGGAGTTAATTAGAACTAGACTTCAGC
TAACCTAATGTAACCTATGAGTCATAAAAACCTACGCATGTGCAATATAA
AATTAAAAGCTATGTATCTAAAAAATAAATAAAATTTTAAAATCTAGGTC
ATCAAAGTGAGATAGGGAAATTAAGCAAACGAGTGTTTTGTTTACCAAGA
ATATAGCACTACAAGCACTCAAAAATCACTTGCAGTTTTAAAATTTTGAG
GGGATTCTCCTTTTGTGCAAATATTTTCTCGATGATTGTTATATTTGAAA
TAAACCACTGTCGTGCTAACTCGCATTTATGAGATGAAAGCTTTTAAACC
AACTGCATATCTCTCATAAAACAACACCAATCTTCTTACATTTGTCTATA
TAGAATATCACTGAACTCGAAATCACCAACGCTGGTATCACAGACATCGC
TTTAGCTGAAATCAGTGACGAAATCACCAATCTAACTCATCTCAATATAA
GCGGTTGTATTGATGTCACGGATGTCGGGTTACGCGAAATCCTTGATAAA
TGTAAAGAATTAAAACACTTGAACGTTCAAAATACACCAACAATGAGAGA
AGACTGCGTCCAAGCATTCATTTTCAACTATACTTTAGAGTATTTCAATG
CATTAGAGACAAACCTACTTCCTGATGATGCTCAAAGACTTAAGCGCCAT
TTCGATGCTTTTCATAGACCATATGAGTTTCTATGGAGTCGTACAAAGGT
TGTTAATCAGACTTACGAGTTAGAGACTGTCCGCGAGGTCAATCGGAGGC
CATTATTCACTGATTTCCCACCATGGACCAATGAAGAAATTTTCAATTCT
ATGCATATTGATGAACATCTGTGGAATAATGCTGAAACGATTACAAGACG
ACCGGTTGAATTTACAGCTCAACAATACTTGATTAATTTAAGGAACGCCT
GTAATCAACCAGTATTCAATCCTTCAACAATGGTCATTCATGATTGGTCA
GAACAAGCTTTTAAAGGTGGCCCGAAAGACTGGTGGAGTTCTGATCAAAA
GATCGACAGCCTAGCACGAAAATTAAAAATTAAACGAAGCGATCCTAAAC
TAAAAGAAACTGACGAATACAAAAAAATTATTGAAGATGAAAACTTCAGA
GTAGACAAAGTCGCATTCCCAGAAGAAAATAACTCTAAATTTGGCATAGA
TGGAATTTTAGGAAATCCAGATGATACAGATTTAGGCTGGAAACGCATTT
ATGAAGTACAGGACAATTTGAAATCGTTGAAAAAGGAATATGAGGTCTTG
ATGGAAGAATTTCAAACTTTCGAACAAAAATAATTAGCCCGGGAAATAAT
TATTGAAATTCAATAGAAAACATTTTAGTTAAAAATTGTATATATACCTT
AAATTTTAAATTATATTTATATAGCTTTAAATAAATTTTACTTATTTCTA
CAAAAAAGAACCTTTTTAAGAATATTTTAAAATAGTTTTTGAGGTACGCT
CAATATCTCCATTAGACGAAGAATGAACCAGAAAGCCCTGCTTTAACTAG
CTCATTCGTCTACTCATACACTCATTTTGTTTTATAAGCATACGGTTAAT
TTTAGCTGAAGCTCACTATGCTTAAGTAAAGCTCAATT

Coding sequence (CDS) from alignment at scaffold_86:932896..936533-

>TCONS_00073046 ID=TCONS_00073046|Name=TCONS_00073046|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_86:932896..936533- (Clytia hemisphaerica)
ATGAATTCGGAAATGGAGCTCGATAAAAAAGACGAATCATTCCCGTCTCC
AGGGGAACGAGTATTCCAAAGTTGGGAACTAGTCATGAATATTTTCAGTT
ATTTGCCATGGAGTGAAGTATGTAGATTACGTAACCTAAGTGCAGAAACT
CGTTATGCTTGTCAGTACAGTGTTCATGAAATAACTGATCCAGAAGATCA
TAACATCGAAGAGAACGATTTTTACGATTTCCTTCTTGCCCTTGGCTCAA
TAGGATGTCACAAACTCAATAAAATCGATGTTTTATCCTCACCAAACCTC
AGCAATAACATTCTACCCATTCTTAAGTTTTGTGGCAACATCGAACACTT
AGCGTTGACAAAAAATCACGGAGGACAAGATATTTACATGAGCATGATCT
ATAACACTGATGTTCGTCATTTGGCAATTCAAGCAACCGAAGTGCATTAT
TTTCAAGATGTCGACTTGATTGATATCTTGCTGATTTTACAGAATATCAC
TGAACTCGAAATCACCAACGCTGGTATCACAGACATCGCTTTAGCTGAAA
TCAGTGACGAAATCACCAATCTAACTCATCTCAATATAAGCGGTTGTATT
GATGTCACGGATGTCGGGTTACGCGAAATCCTTGATAAATGTAAAGAATT
AAAACACTTGAACGTTCAAAATACACCAACAATGAGAGAAGACTGCGTCC
AAGCATTCATTTTCAACTATACTTTAGAGTATTTCAATGCATTAGAGACA
AACCTACTTCCTGATGATGCTCAAAGACTTAAGCGCCATTTCGATGCTTT
TCATAGACCATATGAGTTTCTATGGAGTCGTACAAAGGTTGTTAATCAGA
CTTACGAGTTAGAGACTGTCCGCGAGGTCAATCGGAGGCCATTATTCACT
GATTTCCCACCATGGACCAATGAAGAAATTTTCAATTCTATGCATATTGA
TGAACATCTGTGGAATAATGCTGAAACGATTACAAGACGACCGGTTGAAT
TTACAGCTCAACAATACTTGATTAATTTAAGGAACGCCTGTAATCAACCA
GTATTCAATCCTTCAACAATGGTCATTCATGATTGGTCAGAACAAGCTTT
TAAAGGTGGCCCGAAAGACTGGTGGAGTTCTGATCAAAAGATCGACAGCC
TAGCACGAAAATTAAAAATTAAACGAAGCGATCCTAAACTAAAAGAAACT
GACGAATACAAAAAAATTATTGAAGATGAAAACTTCAGAGTAGACAAAGT
CGCATTCCCAGAAGAAAATAACTCTAAATTTGGCATAGATGGAATTTTAG
GAAATCCAGATGATACAGATTTAGGCTGGAAACGCATTTATGAAGTACAG
GACAATTTGAAATCGTTGAAAAAGGAATATGAGGTCTTGATGGAAGAATT
TCAAACTTTCGAACAAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045291XLOC_045291Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073046-proteinTCONS_00073046-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073046-exon-scaffold_86-1575043694:936275..936533TCONS_00073046-exon-scaffold_86-1575043694:936275..936533Clytia hemisphaericaexon
TCONS_00073046-exon-scaffold_86-1575043694:935244..935524TCONS_00073046-exon-scaffold_86-1575043694:935244..935524Clytia hemisphaericaexon
TCONS_00073046-exon-scaffold_86-1575043694:932896..934130TCONS_00073046-exon-scaffold_86-1575043694:932896..934130Clytia hemisphaericaexon
TCONS_00073046-exon-scaffold_86-1510915933:936275..936533TCONS_00073046-exon-scaffold_86-1510915933:936275..936533Clytia hemisphaericaexon
TCONS_00073046-exon-scaffold_86-1510915933:935244..935524TCONS_00073046-exon-scaffold_86-1510915933:935244..935524Clytia hemisphaericaexon
TCONS_00073046-exon-scaffold_86-1510915933:932896..934130TCONS_00073046-exon-scaffold_86-1510915933:932896..934130Clytia hemisphaericaexon
TCONS_00073046-exon-scaffold_86-1491911889:936275..936533TCONS_00073046-exon-scaffold_86-1491911889:936275..936533Clytia hemisphaericaexon
TCONS_00073046-exon-scaffold_86-1491911889:935244..935524TCONS_00073046-exon-scaffold_86-1491911889:935244..935524Clytia hemisphaericaexon
TCONS_00073046-exon-scaffold_86-1491911889:932896..934130TCONS_00073046-exon-scaffold_86-1491911889:932896..934130Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:932896..936533 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.022655	0.0220922	0	0	0.305515	0.096569	0.0873798	0.245412	0.133705	0.189178	0.18362	0.150881	0.391745	0.140826	0.0900498	0.0552213	0.0510211	0.191748	0.0240828	0.352812	0.459987	0.448731	0.311709	0.307005	0.243237	0.694666	0.155323	0	0.0754359	0.0768572
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675L_dom-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073046 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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