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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073075 ID=TCONS_00073075|Name=TCONS_00073075|organism=Clytia hemisphaerica|type=transcript|length=2993bp
aaaaaataaataaaaatggcgAGCAATGATGCAACTGCACAGCAGTCTAT
TACCACCCCACAGCCACAAATAACCACTCCACAGCCGCACATTGAAACAT
CACAACCGCAGATTACCACACAGACGCCCCCACCTCAAACGTTGAATCAA
ACTGCAGACAAAATACAAGATTTTTTACGTTTTGTTGAAACTGTGGAAAC
TACTGGTGATGTAGTGGAAGGAGAAATAAGTAACGATGTTAATCTACATG
AAATCTATGATCACGATGGTGCTGGTGGTGATTTAAATTCTGGTCAATCT
TCAAATAGTGGTGGCGAGAGAATTACGCCAATTCTAAGCGTTAACCCAAA
CGATGCTCTCCAAAGTGAATCCGCTAATGCTGGTCTAAATTCAAATGAAA
CTTTGGTCTTTGTAACTCCAACTAAAGAAAAGGCTCCACCAAGACGCTCT
TTCattaataatattcaaaaatCGTTAGATTCTCATTACTTTGACAATCA
TCATTATGGTATGGTTAATCATGAACATTTTAATAATTATCAAGTCATTA
ACGGATATTTAGGTCCAAAACAACATTCAGAGAAAGTATATTGGACAAAT
TTAATGCCCAACAACATCCATGTTCAAAGACCATGTGACATTTTACCGCC
TGTACCCCAAGCCATGACTCTTCTTCCTTTAGCTTCAAGTATTGAAACCA
TAAGAGACGCGTTTGATATTTTATTCCCTGTCGAAATGGTGGATTTGATT
CTCAAACATACCAACCAGAAGATCAAGCACGTCCAAGACAATCTACCAGA
TCCGaaagaaaattcatcaaatcgATCGTATTATTATGTCAGACCTTTAA
GTCGGAACGAGCTTTACGCTTTTCTTGGGTTATTGTACGCTAGAGGCCTT
CTTGGCAAATCTACCTACAAAATTGAGAATCTCTTTCATGAGACTTCTGG
TCATCCCGTCTTCAGTGGAACAATGTCCAGACATCGATTAAGCTTTATTC
TATCTGTCCTTTCGTTTGATGAAGAAAACGAACAGTTGAAAGAGCTTTGG
AAATCTGATCGATTCGCAGCGGTTAGAGAATTGACAAATACTTTTAACGA
GCGAATGAAAAGTGTCTTGATTCCGTCCCAATATCTGACCATTGATGATA
CTTTGTATCCAATGACCCAGCCTGTTGGCAACAAGGCTTTCAACCCGAAT
GATAAAATCAGGAACGGTTTATTGTATAAATCCTTAAGCGATGCGACTGT
ACCCTTCATTTATCAAGTCGCTCCATACTCGGCAAAACCTTTAAACAGTA
CTGGGCCATATTATTTGGACACCACCGAAGACTACGTGAAGAATCTTGTA
GAATCTTTACCGGGAAGAAATATGAAAGGTAGGACCATTACAATGGATCA
ACAATACAGTTCTGTCTTGACAGCCAGTTGGCTTTTCTCCAGAGATATAA
CCATGGTTGGGATGGTGGATGCGAGTAATCCAGGAGTCCCTGAAGAATTG
CGAATTCCAAAAAATCGTGAAGAGAATCAAAGCACAATGCATTGGGAAAA
ACATCAGGGAAATTTTGTGTTATGCACTTATACAAAGAAAGCTACGAATA
CCAAAGGGAAGGAAAATATCTTCATGTTAACAACCACACGACCTTTGCTT
GGTGTCACGAAAGAGGGTCAAAAACGTGTTCCATCATTGATCAGATTCTa
cgaaaacacaaagaaatgcAATGAAGaatttaatcaattttcaacaaaaa
ctatAACACATCAATGGGCAAAAGCTCATTTCTACTTCTTATTGGATGTC
ATTCGTCGAAATTCTTTAACCTTGCATTCAATCAAACACGGTAAAAATTG
TCTGGTGGGGATGGAAACATTTGACCCCTCGTGGGAACTTGTTATGAGCT
TGGTCAAGCCGTTTGTTGCCGAAAGACCACTCACGGGCTTGTGCTTTaac
gtcaaaaataaaatatctatTCTACTCGGGAAAATTCCTGACCAGTCTGG
tcttgaaaatgaagaatattCGAGGGTTGGTGAATCAAGAAAGCGTTGTC
GAGTCTGTTTGGATGATATTGCTGGTAAAGGTTGTAAGAAACGAAAAGAT
AGCTTGAACAAAACCAAGAACAGGTGTCAGAAATGTGGTGAATGTATCTG
TGAGAAGCATTCGAGATTGGTTTGCAAAAAGCATGAATTTCTTGAAtgat
cactttctattgcaatgtTTAAATTGTGGGCCTGATAATGGATAATACAC
CAATCGACCTTTTGCTGAGCGGTGTGTGACAATTTAGAATGAATttgttc
tcagaagactctccagtggtgtaTATTATGAATAGGGCTAATTTGTCAGA
TACGGAATCGACTAATAGGCTAAAAAGAATAATCAAAAACTCTAGATTTT
AATTCAAGAAAGATATGAAAATCTgaatacatatttgaaatcagacCAAG
TTTTTGGTTTGGAAGAAAAAACCTTCTATTTTTCTCATTCACTTTCgaaa
tatttaaagatttttaaacccATGAAATTATTCACTGAAAATTATCCTTC
CAACATCTTATTTGCTTCAAGAGCAATGTCCCGAAATGGNTGAATCAAGA
AAACGTTGTCGAGTCTGTTTGGATGATATTGCTGGTAAAGGTTGTAAGAA
ACGAAAAGATAGCTTGAACAAAACCAAGAACAGGTGTCAGAAATGTGGTG
AATGTATCTGTGAGAAGCATTCGAGATTGGTTTGCAAAAAGCATGAATTT
CTTGAAtgatcactttctattgcaatgtTTAAATTATGGGCCTGATAATG
GATAATACACCAATCGACCTTTTGCTGCGCGGTGTGTGAGAATTTAGAAT
GAATtggttctcagaagactctccagtggtgtaTATTATGAATAGGGCTA
ATAGTAATTTGTCAGATACGGAATCGACTAATAGGCTAAAAAGAATAATC
AAAAACTCTAGATTTTAATTCAAGAAAGATATGAAAATCTGAA Run BLAST on NCBI protein sequence of TCONS_00073075-protein >TCONS_00073075-protein ID=TCONS_00073075-protein|Name=TCONS_00073075-protein|organism=Clytia hemisphaerica|type=polypeptide|length=727bp
MASNDATAQQSITTPQPQITTPQPHIETSQPQITTQTPPPQTLNQTADKI
QDFLRFVETVETTGDVVEGEISNDVNLHEIYDHDGAGGDLNSGQSSNSGG
ERITPILSVNPNDALQSESANAGLNSNETLVFVTPTKEKAPPRRSFINNI
QKSLDSHYFDNHHYGMVNHEHFNNYQVINGYLGPKQHSEKVYWTNLMPNN
IHVQRPCDILPPVPQAMTLLPLASSIETIRDAFDILFPVEMVDLILKHTN
QKIKHVQDNLPDPKENSSNRSYYYVRPLSRNELYAFLGLLYARGLLGKST
YKIENLFHETSGHPVFSGTMSRHRLSFILSVLSFDEENEQLKELWKSDRF
AAVRELTNTFNERMKSVLIPSQYLTIDDTLYPMTQPVGNKAFNPNDKIRN
GLLYKSLSDATVPFIYQVAPYSAKPLNSTGPYYLDTTEDYVKNLVESLPG
RNMKGRTITMDQQYSSVLTASWLFSRDITMVGMVDASNPGVPEELRIPKN
REENQSTMHWEKHQGNFVLCTYTKKATNTKGKENIFMLTTTRPLLGVTKE
GQKRVPSLIRFYENTKKCNEEFNQFSTKTITHQWAKAHFYFLLDVIRRNS
LTLHSIKHGKNCLVGMETFDPSWELVMSLVKPFVAERPLTGLCFNVKNKI
SILLGKIPDQSGLENEEYSRVGESRKRCRVCLDDIAGKGCKKRKDSLNKT
KNRCQKCGECICEKHSRLVCKKHEFLE Run BLAST on NCBI transcript from alignment at scaffold_86:1280699..1284193- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073075 ID=TCONS_00073075|Name=TCONS_00073075|organism=Clytia hemisphaerica|type=transcript|length=3495bp|location=Sequence derived from alignment at scaffold_86:1280699..1284193- (Clytia hemisphaerica)
AAAAAATAAATAAAAATGGCGAGCAATGATGCAACTGCACAGCAGTCTAT
TACCACCCCACAGCCACAAATAACCACTCCACAGCCGCACATTGAAACAT
CACAACCGCAGATTACCACACAGACGCCCCCACCTCAAACGTTGAATCAA
ACTGCAGACAAAATACAAGATTTTTTACGTTTTGTTGAAACTGTGGAAAC
TACTGGTGATGTAGTGGAAGGAGAAATAAGTAACGATGTTAATCTACATG
AAATCTATGATCACGATGGTGCTGGTGGTGATTTAAATTCTGGTCAATCT
TCAAATAGTGGTGGCGAGAGAATTACGCCAATTCTAAGCGGTTAGAAAAG
TACTTGATTTTCTTTTTGTGTTTGTAGACCAAAGCACAATAAAAATTTCA
GTGACTTTTGCATCTTGGGCTTGGATATTTTTCTCACCGGGAACGATTTT
ATGCCAATTTTTCAGTAAGGGACAAGGAATGTGATACTGAATTAGATTGG
ACACGCTATCGAAATCTTCTTGAAATTAAACTGGGAAACTTTTAAACAGC
TGCTTTGTATACACCCCTGTGTCACAGACCCGCTGGGACCCCAGCCTCAC
TGGAAAATTTGGCAAAAATTTCGTCTCCAGTGGGAAAATTTCAGCCCCAA
TTTCAGCCATCTCCATTCGTGATCCAATTTTTAAAAGAAGAAAAAAAGTT
TCACCGGGGCTGTGAGACAGCCAGGGGTGTTTATATGGGTATTATAGATA
TCCTTGGATATGCTTTATGCTAACAGATAGTATAGTCCTCTAGAGTAAGA
TTTTATTATTTTCTCATTGTGTTTTGTGTCTCTATCTTTTAGTTAACCCA
AACGATGCTCTCCAAAGTGAATCCGCTAATGCTGGTCTAAATTCAAATGA
AACTTTGGTCTTTGTAACTCCAACTAAAGAAAAGGCTCCACCAAGACGCT
CTTTCATTAATAATATTCAAAAATCGTTAGATTCTCATTACTTTGACAAT
CATCATTATGGTATGGTTAATCATGAACATTTTAATAATTATCAAGTCAT
TAACGGATATTTAGGTCCAAAACAACATTCAGAGAAAGTATATTGGACAA
ATTTAATGCCCAACAACATCCATGTTCAAAGACCATGTGACATTTTACCG
CCTGTACCCCAAGCCATGACTCTTCTTCCTTTAGCTTCAAGTATTGAAAC
CATAAGAGACGCGTTTGATATTTTATTCCCTGTCGAAATGGTGGATTTGA
TTCTCAAACATACCAACCAGAAGATCAAGCACGTCCAAGACAATCTACCA
GATCCGAAAGAAAATTCATCAAATCGATCGTATTATTATGTCAGACCTTT
AAGTCGGAACGAGCTTTACGCTTTTCTTGGGTTATTGTACGCTAGAGGCC
TTCTTGGCAAATCTACCTACAAAATTGAGAATCTCTTTCATGAGACTTCT
GGTCATCCCGTCTTCAGTGGAACAATGTCCAGACATCGATTAAGCTTTAT
TCTATCTGTCCTTTCGTTTGATGAAGAAAACGAACAGTTGAAAGAGCTTT
GGAAATCTGATCGATTCGCAGCGGTTAGAGAATTGACAAATACTTTTAAC
GAGCGAATGAAAAGTGTCTTGATTCCGTCCCAATATCTGACCATTGATGA
TACTTTGTATCCAATGACCCAGCCTGTTGGCAACAAGGCTTTCAACCCGA
ATGATAAAATCAGGAACGGTTTATTGTATAAATCCTTAAGCGATGCGACT
GTACCCTTCATTTATCAAGTCGCTCCATACTCGGCAAAACCTTTAAACAG
TACTGGGCCATATTATTTGGACACCACCGAAGACTACGTGAAGAATCTTG
TAGAATCTTTACCGGGAAGAAATATGAAAGGTAGGACCATTACAATGGAT
CAACAATACAGTTCTGTCTTGACAGCCAGTTGGCTTTTCTCCAGAGATAT
AACCATGGTTGGGATGGTGGATGCGAGTAATCCAGGAGTCCCTGAAGAAT
TGCGAATTCCAAAAAATCGTGAAGAGAATCAAAGCACAATGCATTGGGAA
AAACATCAGGGAAATTTTGTGTTATGCACTTATACAAAGAAAGCTACGAA
TACCAAAGGGAAGGAAAATATCTTCATGTTAACAACCACACGACCTTTGC
TTGGTGTCACGAAAGAGGGTCAAAAACGTGTTCCATCATTGATCAGATTC
TACGAAAACACAAAGAAATGCAATGAAGAATTTAATCAATTTTCAACAAA
AACTATAACACATCAATGGGCAAAAGCTCATTTCTACTTCTTATTGGATG
TCATTCGTCGAAATTCTTTAACCTTGCATTCAATCAAACACGGTAAAAAT
TGTCTGGTGGGGATGGAAACATTTGACCCCTCGTGGGAACTTGTTATGAG
CTTGGTCAAGCCGTTTGTTGCCGAAAGACCACTCACGGGCTTGTGCTTTA
ACGTCAAAAATAAAATATCTATTCTACTCGGGAAAATTCCTGACCAGTCT
GGTCTTGAAAATGAAGAATATTCGAGGGTTGGTGAATCAAGAAAGCGTTG
TCGAGTCTGTTTGGATGATATTGCTGGTAAAGGTTGTAAGAAACGAAAAG
ATAGCTTGAACAAAACCAAGAACAGGTGTCAGAAATGTGGTGAATGTATC
TGTGAGAAGCATTCGAGATTGGTTTGCAAAAAGCATGAATTTCTTGAATG
ATCACTTTCTATTGCAATGTTTAAATTGTGGGCCTGATAATGGATAATAC
ACCAATCGACCTTTTGCTGAGCGGTGTGTGACAATTTAGAATGAATTTGT
TCTCAGAAGACTCTCCAGTGGTGTATATTATGAATAGGGCTAATTTGTCA
GATACGGAATCGACTAATAGGCTAAAAAGAATAATCAAAAACTCTAGATT
TTAATTCAAGAAAGATATGAAAATCTGAATACATATTTGAAATCAGACCA
AGTTTTTGGTTTGGAAGAAAAAACCTTCTATTTTTCTCATTCACTTTCGA
AATATTTAAAGATTTTTAAACCCATGAAATTATTCACTGAAAATTATCCT
TCCAACATCTTATTTGCTTCAAGAGCAATGTCCCGAAATGGNTGAATCAA
GAAAACGTTGTCGAGTCTGTTTGGATGATATTGCTGGTAAAGGTTGTAAG
AAACGAAAAGATAGCTTGAACAAAACCAAGAACAGGTGTCAGAAATGTGG
TGAATGTATCTGTGAGAAGCATTCGAGATTGGTTTGCAAAAAGCATGAAT
TTCTTGAATGATCACTTTCTATTGCAATGTTTAAATTATGGGCCTGATAA
TGGATAATACACCAATCGACCTTTTGCTGCGCGGTGTGTGAGAATTTAGA
ATGAATTGGTTCTCAGAAGACTCTCCAGTGGTGTATATTATGAATAGGGC
TAATAGTAATTTGTCAGATACGGAATCGACTAATAGGCTAAAAAGAATAA
TCAAAAACTCTAGATTTTAATTCAAGAAAGATATGAAAATCTGAA Coding sequence (CDS) from alignment at scaffold_86:1280699..1284193- >TCONS_00073075 ID=TCONS_00073075|Name=TCONS_00073075|organism=Clytia hemisphaerica|type=CDS|length=2184bp|location=Sequence derived from alignment at scaffold_86:1280699..1284193- (Clytia hemisphaerica)
ATGGCGAGCAATGATGCAACTGCACAGCAGTCTATTACCACCCCACAGCC
ACAAATAACCACTCCACAGCCGCACATTGAAACATCACAACCGCAGATTA
CCACACAGACGCCCCCACCTCAAACGTTGAATCAAACTGCAGACAAAATA
CAAGATTTTTTACGTTTTGTTGAAACTGTGGAAACTACTGGTGATGTAGT
GGAAGGAGAAATAAGTAACGATGTTAATCTACATGAAATCTATGATCACG
ATGGTGCTGGTGGTGATTTAAATTCTGGTCAATCTTCAAATAGTGGTGGC
GAGAGAATTACGCCAATTCTAAGCGTTAACCCAAACGATGCTCTCCAAAG
TGAATCCGCTAATGCTGGTCTAAATTCAAATGAAACTTTGGTCTTTGTAA
CTCCAACTAAAGAAAAGGCTCCACCAAGACGCTCTTTCATTAATAATATT
CAAAAATCGTTAGATTCTCATTACTTTGACAATCATCATTATGGTATGGT
TAATCATGAACATTTTAATAATTATCAAGTCATTAACGGATATTTAGGTC
CAAAACAACATTCAGAGAAAGTATATTGGACAAATTTAATGCCCAACAAC
ATCCATGTTCAAAGACCATGTGACATTTTACCGCCTGTACCCCAAGCCAT
GACTCTTCTTCCTTTAGCTTCAAGTATTGAAACCATAAGAGACGCGTTTG
ATATTTTATTCCCTGTCGAAATGGTGGATTTGATTCTCAAACATACCAAC
CAGAAGATCAAGCACGTCCAAGACAATCTACCAGATCCGAAAGAAAATTC
ATCAAATCGATCGTATTATTATGTCAGACCTTTAAGTCGGAACGAGCTTT
ACGCTTTTCTTGGGTTATTGTACGCTAGAGGCCTTCTTGGCAAATCTACC
TACAAAATTGAGAATCTCTTTCATGAGACTTCTGGTCATCCCGTCTTCAG
TGGAACAATGTCCAGACATCGATTAAGCTTTATTCTATCTGTCCTTTCGT
TTGATGAAGAAAACGAACAGTTGAAAGAGCTTTGGAAATCTGATCGATTC
GCAGCGGTTAGAGAATTGACAAATACTTTTAACGAGCGAATGAAAAGTGT
CTTGATTCCGTCCCAATATCTGACCATTGATGATACTTTGTATCCAATGA
CCCAGCCTGTTGGCAACAAGGCTTTCAACCCGAATGATAAAATCAGGAAC
GGTTTATTGTATAAATCCTTAAGCGATGCGACTGTACCCTTCATTTATCA
AGTCGCTCCATACTCGGCAAAACCTTTAAACAGTACTGGGCCATATTATT
TGGACACCACCGAAGACTACGTGAAGAATCTTGTAGAATCTTTACCGGGA
AGAAATATGAAAGGTAGGACCATTACAATGGATCAACAATACAGTTCTGT
CTTGACAGCCAGTTGGCTTTTCTCCAGAGATATAACCATGGTTGGGATGG
TGGATGCGAGTAATCCAGGAGTCCCTGAAGAATTGCGAATTCCAAAAAAT
CGTGAAGAGAATCAAAGCACAATGCATTGGGAAAAACATCAGGGAAATTT
TGTGTTATGCACTTATACAAAGAAAGCTACGAATACCAAAGGGAAGGAAA
ATATCTTCATGTTAACAACCACACGACCTTTGCTTGGTGTCACGAAAGAG
GGTCAAAAACGTGTTCCATCATTGATCAGATTCTACGAAAACACAAAGAA
ATGCAATGAAGAATTTAATCAATTTTCAACAAAAACTATAACACATCAAT
GGGCAAAAGCTCATTTCTACTTCTTATTGGATGTCATTCGTCGAAATTCT
TTAACCTTGCATTCAATCAAACACGGTAAAAATTGTCTGGTGGGGATGGA
AACATTTGACCCCTCGTGGGAACTTGTTATGAGCTTGGTCAAGCCGTTTG
TTGCCGAAAGACCACTCACGGGCTTGTGCTTTAACGTCAAAAATAAAATA
TCTATTCTACTCGGGAAAATTCCTGACCAGTCTGGTCTTGAAAATGAAGA
ATATTCGAGGGTTGGTGAATCAAGAAAGCGTTGTCGAGTCTGTTTGGATG
ATATTGCTGGTAAAGGTTGTAAGAAACGAAAAGATAGCTTGAACAAAACC
AAGAACAGGTGTCAGAAATGTGGTGAATGTATCTGTGAGAAGCATTCGAG
ATTGGTTTGCAAAAAGCATGAATTTCTTGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073075-exon-scaffold_86-1575043694:1283854..1284193 | TCONS_00073075-exon-scaffold_86-1575043694:1283854..1284193 | Clytia hemisphaerica | exon |
| TCONS_00073075-exon-scaffold_86-1575043694:1280699..1283351 | TCONS_00073075-exon-scaffold_86-1575043694:1280699..1283351 | Clytia hemisphaerica | exon |
| TCONS_00073075-exon-scaffold_86-1510915933:1283854..1284193 | TCONS_00073075-exon-scaffold_86-1510915933:1283854..1284193 | Clytia hemisphaerica | exon |
| TCONS_00073075-exon-scaffold_86-1510915933:1280699..1283351 | TCONS_00073075-exon-scaffold_86-1510915933:1280699..1283351 | Clytia hemisphaerica | exon |
| TCONS_00073075-exon-scaffold_86-1491911889:1283854..1284193 | TCONS_00073075-exon-scaffold_86-1491911889:1283854..1284193 | Clytia hemisphaerica | exon |
| TCONS_00073075-exon-scaffold_86-1491911889:1280699..1283351 | TCONS_00073075-exon-scaffold_86-1491911889:1280699..1283351 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:1280699..1284193 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR029526 | PGBD |
Blast
The following BLAST results are available for this feature:
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