TCONS_00073262 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073262
Unique NameTCONS_00073262
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3225

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073262 ID=TCONS_00073262|Name=TCONS_00073262|organism=Clytia hemisphaerica|type=transcript|length=3225bp
TTGTAAACACGACTGATTGAACAGATATAAAATCACATTCGAGCAGGTAG
AAACTCTACTATTATTCAAAGACTGGGAAATTGAAATCGTACAAAGAGAG
ACGATGGAATGGGTCCTACTGAAAGTATGTCTTTTACTTGCAACCCGCAT
GTGTCAAGAAACCTTAGCTGCCGTAATATCGCCGAATCATGATGGTAAAA
AAATAGATTTAGAGAATAATGTTAGACAGAATTCAACAAAGGATCTTCGA
AGTTCACTACCAAGGCAACtaagaataaacaaaaatcagGCAATCATTGT
GAAGGAACCACGAGATTTTAATATCATTTATGTTGAAAATCGAACCGCTA
TCGTTGAAAGGTtcgaaaatgaaacaaaaacaattgtTGATAGCAATGAA
GTCAAAACAAGATTATCTTTGAAAGATAAGTTACAATCCTTGGTTAAGAG
AAAAGGTATCACTATATCTTTACTAAATCAAGACCAAGAAAGCATGCTTA
ACCTACGGACGAAAGATTGTATTTTACCAACCACGTTTGATGTTCTGATC
GAAATTGTAACAAGATTTGAGCCAAAAGAACTAATTCTCATCTACCATTC
GAAGATTTTAAGTCAGGTAGATATAATAGactggaaagaaaaaacctcAA
AACACAAAGAATTTAAATTTATCGATTTTAAAATCAAAGAAGATGATCTT
TATGACCATACAGGGAAGATTCTAAAAGAAATAAGTCGCTCCACGGATGT
TAAGCTGATTATCTTATTCACACCTTTGGAAATCACGAATCTCATTTTCC
GGTTACGCTCAGAAAAGTTCCGGATGATTACTGGAGGAACTTGGATTGTT
GATAAGGGAATATATCCTGAAGCTGATCGGCCACCAAAAATGGCggaatt
tgaatattttaaatacCGTGTAGTGTTGAACTCAGCTTCCATGCGCTATG
GAGGCTCAATTTGTGATTTGGCAACTAAAATGGCAAGgAAAGTAATCGAA
GAAAAGCTATTGGCAGATGAAATACGAATGATCAGGCTTTGGCAACTCCA
GACTTGGCGAACTGTATACAAAGTCTCATATTTGAACCAGCAGTATCAAC
TTTCATCTCAAAGTATTTTCGGTAAAAACCAAAAGATCTCAGTAGTATCA
AGACTCGATGAGCCTTTTTTGATGGAGAATTACATACCGTGTGAGCATTT
CCAATGTCAAAAACATATCATGTCTTGTCGACTTCCTTTTCATAACAAAA
CAACTCATATCCGTGAGTGGAGGTCTTCTAAATGTAGTGGATACGTTGTA
GACCTATTGTATGAGTTATCAGTAGAAATGCATACAGAATTCGAACTTTA
CGTCGCCTTTGATGGGGAGTTCGGAAGATGCGTCAATCGTTCCACCAATG
AATGGACAGGGATGATTGGAGATGTCCTGAGGCGAGAAGCTGATTTAGCT
ATCCAGGGAATCACCATAACAGAAGAACGATTAAAAGTTGTCGATTTCAC
TTTACCATATTTGCAGAGTCGGATCGAGATTCTAACATTAAAGGAAATGC
CAAAAGAACAGTTGTTCTCCATGTATTTTCTTGAGTTATATGACTTAGAG
GCAAGATATGTTTTGGTGCCATTGTTTTTACTATCCATCTTATCAGTATA
TGTATCTGAAAACATAATCATCTTCAAATCTAATATAACAAAACGAAAAC
AGAAGCGTAGAAACAAAATGGAGCTCAGAGATCTAGGTTTATATTTTGCA
GGATCGGTGTTCCAAAAAGGTGATTTAGGAGCAGCAAACCCGAAGACTTA
TAGTGGGCGTTTTGTAAGCTTGTCATGGTCATTTTGTTTCTTGGTGTTGA
CATCACTGTATACTGCTCTTTTAACAGCTGATCGTGTGGTGACTGGTGGA
TATAGCTCATTCCATGGCATGAAAGATCAGCGGATCTTAAACCCAACATC
AGCTTTCAAGTTTGGTACCATCAATAATACAGTCCTATCTGACTACTTTA
AGACAGCGCCATTGGCAAGTGCTCTACGTATCCATCACTTTATGAAGCGT
TATCACCAAAATGATTATAATGTTACATTACCACTCCTCGAAAGAAGCTA
TTTGCATGCTTTCTTTGCAGAGCACGTTTTCGTGCTCCCGCACGTCAAGA
AGTACGAATGCAAATTCAAGGCTCATAAAACACCAATCCCAGAGGCTAGT
TATGGTGCTGTAGTGGCTAAAGGATCACCTCTAAAAGGACTTGTTTCACA
GGCTATTCTCAAACTTAACGATGCTAAAATTTTGGATGAGTTAAAGGAAA
GATGGTTTACAAACGCATGTGAGAATACAGAATCGACGAATATAAACCCA
TTCAACTTAATATTCTTTTCATCACTTTTCATGGTTTTATTGTTTGCTGT
TGTACTATCTTTCATCGTATTAGGAATNAAATACAGAATCGACAAACATA
AACCCATTCAACTTAATATTCTTTTCATCACTTTTTATGGTTTTATTGTT
TGCTGTTGTACTATCTTTCATCGTATTAGGAATTGAAATTTACGGTCGCT
GCATTTACGAGAAATCCTTTATTTACGAACAAGTCAGATTGATACGAGtg
acaaaaaaacaaagtgTGGCTCGTAAAGAAGATGAATGGGATTATTTTGA
AAGAGAAATTGTAGAAAATGTTTTTACACACTGGAGAAATTTTGCTCAGA
ACAAAGGCTATGGAAGCAGGCCTGCTTATGTTTGATTTGTCACGTGCATT
CGTTATGGTTTCGTATGTTTTTTTGGAAACGAAATTAAGTGATTTTATTG
GCTAAAGATATTTATTCCAATGATTAACCAATAACATCCCATTCTCACAG
TGGGACCCCCTAccactgaaaaaattggtcaaaatattgacccaagtgga
aaattatattccaattttgtccccactgaaaaaagCGGAATAAACAAGTC
CTCAGTGCAAAATTATATGCTGTTCTTTGCCATCCCCATTGAATTGAAAA
CAACGTTATTCGAGTTCCAGCCATTAAGAAcattggaatatcaatcccgC
CGACTTTCAGTCCGTTTTTTATCACCATACCCGCTGACAAAATCCTACCG
GATCTAAGAGAAGGGTCCAATAGTCCAATAGAATAGCTTTATTTCGTTTA
ACTATATATTATAGAACCGTCGTAGCGTTTTTTTTGGTATAGTTTCGATT
GGAAAGAATACTTCTCAGAGTCGCG
Run BLAST on NCBI

protein sequence of TCONS_00073262-protein

>TCONS_00073262-protein ID=TCONS_00073262-protein|Name=TCONS_00073262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=810bp
MEWVLLKVCLLLATRMCQETLAAVISPNHDGKKIDLENNVRQNSTKDLRS
SLPRQLRINKNQAIIVKEPRDFNIIYVENRTAIVERFENETKTIVDSNEV
KTRLSLKDKLQSLVKRKGITISLLNQDQESMLNLRTKDCILPTTFDVLIE
IVTRFEPKELILIYHSKILSQVDIIDWKEKTSKHKEFKFIDFKIKEDDLY
DHTGKILKEISRSTDVKLIILFTPLEITNLIFRLRSEKFRMITGGTWIVD
KGIYPEADRPPKMAEFEYFKYRVVLNSASMRYGGSICDLATKMARKVIEE
KLLADEIRMIRLWQLQTWRTVYKVSYLNQQYQLSSQSIFGKNQKISVVSR
LDEPFLMENYIPCEHFQCQKHIMSCRLPFHNKTTHIREWRSSKCSGYVVD
LLYELSVEMHTEFELYVAFDGEFGRCVNRSTNEWTGMIGDVLRREADLAI
QGITITEERLKVVDFTLPYLQSRIEILTLKEMPKEQLFSMYFLELYDLEA
RYVLVPLFLLSILSVYVSENIIIFKSNITKRKQKRRNKMELRDLGLYFAG
SVFQKGDLGAANPKTYSGRFVSLSWSFCFLVLTSLYTALLTADRVVTGGY
SSFHGMKDQRILNPTSAFKFGTINNTVLSDYFKTAPLASALRIHHFMKRY
HQNDYNVTLPLLERSYLHAFFAEHVFVLPHVKKYECKFKAHKTPIPEASY
GAVVAKGSPLKGLVSQAILKLNDAKILDELKERWFTNACENTESTNINPF
NLIFFSSLFMVLLFAVVLSFIVLGXKYRIDKHKPIQLNILFITFYGFIVC
CCTIFHRIRN
Run BLAST on NCBI

transcript from alignment at scaffold_89:158105..169414-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073262 ID=TCONS_00073262|Name=TCONS_00073262|organism=Clytia hemisphaerica|type=transcript|length=11310bp|location=Sequence derived from alignment at scaffold_89:158105..169414- (Clytia hemisphaerica)
TTGTAAACACGACTGATTGAACAGATATAAAATCACATTCGAGCAGGTAG
AAACTCTACTATTATTCAAAGACTGGGAAATTGAAATCGTACAAAGAGAG
ACGATGGAATGGGTCCTACTGAAAGTATGTCTTTTACTTGCAACCCGCAT
GTGTCAAGAAACCTTAGCTGCCGTAATATCGCCGAATCATGATGGTAAAA
AAATAGATTTAGAGAATAATGTTAGACAGAATTCAACAAAGGATCTTCGA
AGTTCACTACCAAGGCAACTAAGAATAAACAAAAATCAGGCAATCATTGT
GAAGGAACCACGAGATTTTAATATCATTTATGTTGAAAATCGAACCGCTA
TCGTTGAAAGGTTCGAAAATGAAACAAAAACAATTGTTGATAGCAATGAA
GTCAAAACAAGATTATCTTTGAAAGATAAGTTACAATCCTTGGTTAAGAG
AAAAGGTATCACTATATCTTTACTAAATCAAGACCAAGAAAGCATGCTTA
ACCTACGGACGAAAGATTGTATTTTACCAACCACGTTTGATGTTCTGATC
GAAATTGTAACAAGATTTGAGCCAAAAGAACTAATTCTCATCTACCATTC
GAAGATTTTAAGTCAGGTAGATATAATAGACTGGAAAGAAAAAACCTCAA
AACACAAAGAATTTAAATTTATCGATTTTAAAATCAAAGAAGATGATCTT
TATGACCATACAGGGAAGATTCTAAAAGAAATAAGTCGCTCCACGGATGT
TAAGCTGATTATCTTATTCACACCTTTGGAAATCACGAATCTCATTTTCC
GGTTACGCTCAGAAAAGTTCCGGATGATTACTGGAGGAACTTGGATTGTT
GATAAGGGAATATATCCTGAAGCTGATCGGCCACCAAAAATGGCGGAATT
TGAATATTTTAAATACCGTGTAGTGTTGAACTCAGCTTCCATGCGCTATG
GAGGCTCAATTTGTGATTTGGCAACTAAAATGGCAAGGTAAGAGAGTTTG
AAATAAAAATGGCCCCAACCAGCTTACTCTGTAATTTGTACCAGAGTGTA
TCTCACGTTTATCGCTTCGTAGTACACTCTGTGCGCATTGTCTGTTTGAT
AAAAAAATTCCCGTACGGAGACCCCTGCGATGAATTTTGATTTATAAATA
ACAACACTTCTCTCCTCTCTCACCAACACTCCATCGCAGCGGTCGGTTTA
AAAAATCTCAAATGAGAAAAAACAATGACAACAGACCCTCTACGGCCTCT
ATGGGTTTATGTACAGACAACAACCGGCTCGTCCAATGTCTATCAAGCAA
ATCGTCTAAATAGCATTCGAAATTTTCGAGAAAAGACAACAGATTAAGCT
TATGTAGGAAATATCTTCACTGTCCCCAATTTATCTCAAACATCCTTTTG
GAAAACCCGTAGTCGTGACCCACAAAATTGAGGACGATAAAAAAGTTGAT
TTACCGTCGTCCTCAGTTGATCAGGATCTAGACAAATTAGAGATTTACCG
TCTCCGTCGTGTTAATAGCGAGTTTATGTATTTGCACTTTTGAGGACGGT
AAAGTCCTGAAGCGATTTGGAATAACCCGCAGTTCTGATCCGCAATATCG
AGGACGGTAAAAGTGCTGATTTACCGTCGTCCTCAGCTGGTCAGGATCTA
GTCAAATTAGAACCTTACCGTCTCCGTCGCAGAAAAACACACATACATAA
ACTCGGTAATATCGTGTTTTTAGTAGGTTTTCTTTTTTGATTTTTACTCA
AAATATTTTGTTTTAGGAAAGTAATCGAAGAAAAGCTATTGGCAGATGAA
ATACGAATGATCAGGCTTTGGCAACTCCAGACTTGGCGAACTGTATACAA
AGTCTCATATTTGAACCAGCAGTATCAACTTTCATCTCAAAGTATTTTCG
GTAAAAACCAAAAGATCTCAGTAGTATCAAGACTCGATGAGCCTTTTTTG
ATGGAGAATTACATACCGTGTGAGCATTTCCAATGTCAAAAACATATCAT
GTCTTGTCGACTTCCTTTTCATAACAAAACAACTCATATCCGTGAGTGGA
GGTCTTCTAAATGTAGTGGATACGTTGTAGACCTATTGTATGAGTTATCA
GTAGAAATGCATACAGAATTCGAACTTTACGTCGCCTTTGATGGGGAGTT
CGGAAGATGCGTCAATCGTTCCACCAATGAATGGACAGGGATGATTGGAG
ATGTCCTGAGGCGAGAAGCTGATTTAGCTATCCAGGGAATCACCATAACA
GAAGAACGATTAAAAGTTGTCGATTTCACTTTACCATATTTGCAGAGTCG
GATCGAGATTCTAACATTAAAGGAAATGCCAAAAGAACAGTTGTTCTCCA
TGTATTTTCTTGAGTTATATGACTTAGAGGCAAGATATGTTTTGGTGCCA
TTGTTTTTACTATCCATCTTATCAGTATATGTATCTGAAAACATAATCAT
CTTCAAATCTAATATAACAAAACGAAAACAGAAGCGTAGAAACAAAATGG
AGCTCAGAGATCTAGGTTTATATTTTGCAGGATCGGTGTTCCAAAAAGGT
GATTTAGGAGCAGCAAACCCGAAGACTTATAGTGGGCGTTTTGTAAGCTT
GTCATGGTCATTTTGTTTCTTGGTGTTGACATCACTGTATACTGCTCTTT
TAACAGCTGATCGTGTGGTGACTGGTGGATATAGCTCATTCCATGGCATG
AAAGATCAGCGGGTAAGATTTATACTTTTGCTCTAAATGCCGGTCTCAAC
TTTCGCGNGTTCCATGGCATGAAAGATCAACGGGTAAGATTTATACTTTT
GCTCTAAAGGCCGGTCTCAACTTTCGCGCGACATGAGCGAAATTACGTTT
TTGTAATGTCATTGGTCGGTTGAAAAATGAAGCAATTCCATTGGTCGAAA
TTGACGTAACAAATGAAAAAAGTAAAACTTCCTTCAACTTTTTTTATTGA
TGCGAAACTTTTTTATGACGTAATCTTTTCTTCAGGCAAAAAAAGGTTAA
GAAAAAAACTGTCACCCATTTCGTGGGAAAGTGGAGACCGGCCTTGAGTA
AAAAACTTTTAAGGTGTTGATTTTTACTTTTACTCTTAATGACGAAATCA
ATGCTTTCCATTATGGGAAGGTAGAGAATACCTGGAACAAAAATCAGCTA
GGTGCTTTGCTTAGGGCTCTGGACATTTTTCGATTTTACACCAACTTTAA
ATGGCAACCTCTGCATTTTAAAAAGATTAATGTATAACTTTTTTTATACG
TTCTGTTAAACCTACCTTTTTAGAATTTAAAAATCGAAAAATTGAAATAA
AAAAATGAAATAAAGAAGAAAACGAAGAGTTTTTCGAAGAAGAGTGTTTC
ACCTTTCAAAGCCCTAATCTCGGTAAAAACTAAACATTTTGGAATTTTTT
TTGGTTCAGGTGATGTATCTATTTAGTATCTAAAAATGAAATTTCGGAAA
ATTTTTGTGGAAGTATCTTCCCTTTAAAATCTCAAAAAACCTCATTTTTG
GCAACTTTCTCCACAGCTATAACTTTGGATGTAGCCANAAAAAACCTCAT
TTTTGGCAATTTTCTCCACTAAATTTCCATAAGAAAACAGCTATAACTTT
GGATGTAGCCAAATAGAAAATTTTTCCGAAAAAATCATAATAAAGAAATT
ATTTGTCATTAACTTAATAAAATGATTTCCCCAAGGAGATTAGGCTTTTT
TTGTGAAAAGTATATGAATAGCGTGGTTTTGACGTTTTATCAAGGTCCAT
GTCACACTTTTTTCTTAATTACTCATGATGTAATTACTTAAATTCATTTT
TTCAAAAGCAGTTTGTTCTTAAACATGTCAAAGAAGCGAAAACATAAGGT
TTTATCTTCAAATTCTAAAATAGCGCACCGCGCTGAATCTAAAAATATAT
TGTGTTTTTGACATAATCATTACTCTCGATGTGTTTGTACGAGTTCCAAT
CCCATCAACCTTTGTGTTCATCTTTTTTGTACGTTAATTGCATCATTTGA
CAAAAGATGTATAACAACTTGCACCTATCTTTAATTGAGCCGCATTGAAT
TGTGGGATTGCAACTTGTACAAATTTCAAAGAAAGTGAAAAGTAATAATT
ATGACGTACGTGTTGCGGAGCGCTATTGATTTTTCACAAAATTGGGTATG
TCCAGAGCTCTTAAGGGTGTGTGGCCTGAAGGGGAACGGTTTTTATTTTC
TTGTTTTTAAGGCCCATACTCTAAGGCCCGGGGGGGGGGGGACTAGGGCA
AAATGGGTTACGGGGGTGCTCCGCTGGTCAGGGTACCTTTTTAAACCTCC
ACGAGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCTGGTCAGGGT
ACCTTTTTTAACCTCCGCGAGTCCCAGGTAGGGTCGCAAAAACACCAAAA
TAGAAAAATCAGGCCCTCGTAGGGTAACTATTTTTGGAAAATTTGGGAAA
AAAGTAGAAAATTTGATAAAATTTTGGAATTTCAGTCCCATTCAGGGTCA
CTTTTTTCGCAAATTTCGAGTCTCACGTAGGGTCCATTTTTCGAACCTCA
GCGGAGCACCCCCGTCGGTCGACAAGGGTAGTACCCCCCCGGGCCAATGC
CGATAAAAATTCGAAAGTTTTTTGTTGAAGACCCCTAAAGAAATTCTTTA
TACTTAAAAAAAAAAGGTTTCTGAATATCTTTTTTCAAAGGTGAGATATT
TATCTCCAAACTTACCACTCCATGCGCGACCTTTCGGCCTCTCACTTTAA
AAAAAGTTCGATTAAGTTCGATTTCAGTAATTGAACTTACTGTAATCGAA
TTTTGTATTTTGAGAAGTTTGTGAGTATTTGACTAAAGTTCAACAACCGA
ACTTAGTCAAACATTAATCGGCCTACAAAATTTGATTCAGTTCGACAAAG
TTCGATTAAAAATACGGTGTTGGATTGGTTCGATTGATTATGTCTGGAAG
AATAGATTGCTTGAGGAATTTCAAAGATTGAGGTTTTTGGTTTGGTGGGA
AAATGAAAAAAGGTAATATGAATCATAATATAAAAGGTTCCAATTTTAGG
TACCGACCGACCAACCTACCCATTTTTCAAATCTTCTCTAGGACATATGA
ACCAAACAATCAATTGGGCCTGGATGGCCCCTAGCTATCATCGATTATCG
TTTTTAATTTATATTTAATAAATCGATTAATTATCGATTAGCTATCGATT
TTAATCAATAATTGATTTTATCGATTAGTAACGTCTGGATAACATAAATT
GAGGCCAATATGTGGGAGTAAGAAAAGGCCAATATATTTTTCTGATGTAG
TGGCGTGGTGAATATAATATATTTTCAAGCAAATTTTGTCTAGACAGACA
ATAAAAAATAATTCATTGAAAACAATTTACCTGATATTTGATTATGCCGT
CTTCTAAAGCCCAATGGGTGAATGCATGGCCAAGTGGATGTGGTAGAAGA
AGAAAAATAATAAACAAAATTTGGCACCGATCAAAAANTTTTTGATTTTT
TAAAGTATTTGCACGTTTTTTATTCAGTTCTTTCTATAGATTGTAAAATT
TGCAAGATTTGCCATAGCCTAGCCCTACAGCAAAAGGTTTCAGTCCTAAT
GACTGCAGTTTTTGAGAAATTCCATGTTTTTCATTGTTTGATCTGTCAAA
GTTGAACTTGAGGGAATCACCTTTTCAGTAATGACTCTAAAAAGACGATT
GCNTTGCAAGATTTGCCATAGCCTAGCCCTACGGCAAAAAGACTGACTGC
AGTTTTTGAGAAATTCCATGTTTTTCATTGTTTGATCTGTCAAAGTTGAA
CTTGAGGGAATCACCTTTTCAGTAATGACTCTAAAAAGACGATTGCTTAA
ATGCCATGACAGAAAATACAATGGAAAAGCTATTAAAATCGAATCCCTCA
TGAGCAAATGCCAAATTACAAATGCCAGTTGGTCTAAACGCACCCACAGA
TTGGAAATTTCGAAATAAGCTCATTAATATTGCCAATCCTCAAAGGATTG
TCGGGGATTGTCATTTTCATTAATCTTTATATAAACGTTTCCATTGAACG
ACCAAAACTTATNACTATTAAAATCGAATCCCTCATGAGCAAATGCCAAA
TTACAAATGCCAGTTGGTCTAAACGCACCCGGAAATTTCGAAATAAGGTC
ATTAATATTGCCAATCCTCAAAGGATAAAAAATCTTTATATAAACGTTTC
CATTGAACGACCAAAACTTATGAATTTGATTATCCTTCAACAATGCTTCA
CCGCGATCTGTAGCTGCAAGTATGAAAAATCGGGGAAATTTCAATATACT
TAGGCTTAAAAAACAACTTTTGGTTGTCAAAAGTCCACAAGAATTTGATA
GAAAGTTGAAAATAACGTATAAAGCCCATTAAAAGAATTTGTTCTCAAAT
ATTTGTTTTCACCCTTCCAAACGAGAGAGCTTTCGTTTTCTCCAGATCCC
TCAATCCCCTAAAATCCCCTCTCGGATCCCTCAAATCGGAATCCTTATAA
TTCCTATATTGTAGTTGGTTTCTGTAAATAAAATTTTGGGCTAAACTAAA
CTCGACATCCTATATGTAAAGAGAATACAACAAAAAGTTTTTATCGTGTA
TTAAAAATTTTAAAGAAATCTTAAATATCTTGAACTTGTGAATCCGATAC
AGATCGCTGTGCTTTTGATTTCCCCCATAGTAAACGATTNGTTCTGTAAA
TAAAATTTTGGGCTAAACTAAACTCGACATCCTATATGTAAAGAGGATAC
AACAAAAAGTTTTTATCGCGTATTAAAAATTTTAAAGAAATCTTAAATAT
CTTGAACTTGTGAATCCGATACAGATCGCTATGCTTTTGATTTCCCCCAT
AGTAAACGATTATAGTTACTCAAGTTGCTGTTTATGAAAATTTTGTCTGG
TAAGATAGCTTTTTCCTGTATTGCTGTTTTATGAAATTCTTTACTGGAGC
GTAAAAGAGCTCCACAGATTTTTCGATTTTTAAAACGAACAATAGTTCTC
CTTGGGAAGGGATGGTACTAGGTTGGATTGTTTATCAGTGGACTAGGTCA
AATTGTNAATTCTTTACTGGAGCGTAAAAGAGCTCCACAGATTTTTCGAT
TTTTAAAACGAACAATAGTTCTCCTTGGGAAGGGATGGTACTAGGTTGGA
TTGTTTATCAGTGGACTAGGTCAAATTGTTTAACAGTGGACCGGACATGG
ATAGATTGGATTGTTTATCAGTGGACTAGGNATAAACACTTTCGCTTCCT
GAAAACCTAAAAACAAAAATCAAAACATCCCAAATGAGTGACCTGAGTGA
TTCTAGATTTTAGTAGTGTTCTAGCTACTAATATCAGAAATCTCATCTGG
CCACTCCACATGCATCCTTTAGGTAAAATCTCGTAGCAGACTCGAATAAG
AGTACACCCCCTTCTCACTGGGAACGCTTCTCACTAGGAAAATTGGTCAA
AATGATCGTACCCGTTGGAAAATTATACTTTTGTCCCCGCTGAAAATAAT
CAGATAAGCCAATCCTCAATGCAAATTATAATATCTTTTTTCCTTACTCA
CTGAATTTTCTAGACCGAAAACAATGGAATTAAAATCCCCAGTTATAAGT
AAACATGGGAATATCAATTCCCATCGAGTTTAGGTCCGCTATTTTACCCC
TACTGGCTGATAATATCCCACCGGGTCTGAGAGAAGGGGGTGTAAAAGTG
ACCCACTTCACTGAAGTCGTTTGTGAAAAATGTTAAATACAGTTATATAG
GTGATATACAGGGTGTCCGGAAAAAAAGTATCGAGTTCGAACATGATTCT
GAGTAGAAGGTTGTTGCGTGTGTTTAAAAAAATGTAAGAAATTATATACC
AACACAATAATTGTTTTTACAACAGTCATTATGATTAAAAATAATTAACT
TTCTTTACAATTTTCAATAGCCCTTTTTACTATTCCCCTACCGCTGCCTA
GTTTTACTTTTTTATTGTTCCATACATTCCATTTTTATTATTTTCATAGT
TTTACATACGATTCTTTACAAACATGTTTTAATTGTTGCGTTTTNGAGTA
GAAGGTTGTTGCGTTGTTTAAAAAAATGTAAGAAATTATATACCAACACA
ATAATTGTTTTTACAACAGTCATTATGATTAAAAATAATTAACTTTCTTT
ACAATTTTCATGTAGTTAAAGTTATTGAGAATTGTTTTTTGTAAAAGTTA
TTCATAAAAGATGTCTCATGACAATAAACATGACACAGAAAAACTTTGAT
AAACAATTTAGTGAAACACACACGAAAACTTTCTTTCCATACACCATAGA
CTTTTTTTCGGGACACCCTGTACGATAATACAATAACTGTTATGTGATAA
TGTCCTTCAGCTTTCCTTATTACCATACCAATACAGGGTGTCCCTAATTA
AAGTATCGAGTTTGAACATGCGATTGAGTAGAAAAGTTTGTGTGTGTTAT
CGCTAAAATATAAGAACGTTCTCCATCACACAGGTTTATTACAAAAGGTA
GTTACAACGTATAAATTAATCGTAATGACAAAGAAAAAAGAGGGAGAGCT
TAAAATACAATTTTGTGAACACACGCACATAAAACTTTATACTCATAGTT
GTGTTTCGACTCGATACTTTAATTAGGGACACCCTGTATTACCAATAATC
TAAGTAAAGCATCTTTGTAATTCGCAGAAAATTAGCAAGACTCAGCAACT
TTGGTTTTCATAAAATTGGGGAAGCCGAAAACGACCAAACCAACAATTTA
AGAAAATGAGGATGAAATCTTGGGGGTACTGTGAGGGACGAATCTAGCAT
GGGACAATCAAAAGCACATCATTGTCTCAACCACCCGAAAACAGAGTAAA
ACACCCCATTTTCCTTCTTGTTTCCAGATCTTAAACCCAACATCAGCTTT
CAAGTTTGGTNACTGTGAGGGACGAATTTAGCATGGGACAATCAAAAGCA
CATCATTGTCTCAACCACCCGAAAACAGAGTAAAACACCCCATTTTCCTT
CTTGTTTCCAGATCTTAAACCCAACATCAGCTTTCAAGTTTGGTACCATC
AATAATACAGTCCTATCTGACTACTTTAAGACAGCGCCATTGGCAAGTGC
TCTACGTATCCATCACTTTATGAAGCGTTATCACCAAAATGATTATAATG
TTACATTACCACTCCTCGAAAGAAGGTAAGCCTTAGACTACACGCATCCG
CTCTGATATGTTATGATATAGGGGCTACGCAACATGTATGAAATTCACGT
CCAACAGTTTCCCTTGTCTTTCTGTTTCAAAAACTTAATTAATAGTAAGT
TGTATTTGAGAGATTTTTGAACTTCATTAAATTTAAGTTATAAATTTGAA
TGACTAAAGGCTGATGCAATCATTGGATTTCAATTCCTTTTTATGAAAGT
TGAAACAGGTTACCCCAATTTGGGTAACCCTCGGACGGGACCTTTACACA
ATTAGCATACCCAATATCAATACATATCACAGGGGATACGTGCAGCCTAG
TTAATATTTGGCTTTATAGAATTGACCACTATTCAATATTTTATCCACTC
TGTTTACAATTAGAATTGAGCTCATTCAATATTCACCCAAATCAGGATGA
ACAAGATCAAAGCAGTTCAACGAGGGCAGATTTTCATACTTTCATACGGA
GCCACTACCTTTAGAAATTATGATTATGCGTGCCCGAGTTGAGTAATCAG
AATCTACTGAAAAATTTGATTAGTAGATTTAGGCTAAGAGTGATTGACTT
TCATTGCCTAAAATTGAAAGCTCCGTTTTATGAATCCTGTATGAACTTTA
GAATTTTTTTGCCGATAGTAACTACACCCCCTTCTCACAGACCGACTTAT
CCTCCAATTTTGTCCCCATTGAAAAAAATCAAATAAACCAATCCTCACTG
CAAAATATTACGCTACTTTCCCCATCCCCACAGACTTTTCAGACAACAAA
AGAATTGAAATCCCCAGCCATAAAAAATATGGGAATATCAATCCCCATCG
AGTTTCAGTACATTAATTTCATCCCCACTGGCTGAAAAAATCATACTGGG
TCTGAGAAGGGGGTATATAACTACAGCCTTACAAGCCTTACAAGATATCA
CCCATTTTTCTCTATTTCTCTTCTTTTTCCAGCTATTTGCATGCTTTCTT
TGCAGAGCACGTTTTCGTGCTCCCGCACGTCAAGAAGTACGAATGCAAAT
TCAAGGCTCATAAAACACCAATCCCAGAGGCTAGTTATGGTGCTGTAGTG
GCTAAAGGATCACCTCTAAAAGGACTTGTTTCACAGGCTATTCTCAAACT
TAACGATGCTAAAATTTTGGATGAGTTAAAGGAAAGATGGTTTACAAACG
CATGTGAGAATACAGAATCGACGAATATAAACCCATTCAACTTAATATTC
TTTTCATCACTTTTCATGGTTTTATTGTTTGCTGTTGTACTATCTTTCAT
CGTATTAGGAATNAAATACAGAATCGACAAACATAAACCCATTCAACTTA
ATATTCTTTTCATCACTTTTTATGGTTTTATTGTTTGCTGTTGTACTATC
TTTCATCGTATTAGGAATTGAAATTTACGGTCGCTGCATTTACGAGAAAT
CCTTTATTTACGAACAAGTCAGATTGATACGAGTGACAAAAAAACAAAGT
GTGGCTCGTAAAGAAGATGAATGGGATTATTTTGAAAGAGAAATTGTAGA
AAATGTTTTTACACACTGGAGAAATTTTGCTCAGAACAAAGGCTATGGAA
GCAGGCCTGCTTATGTTTGATTTGTCACGTGCATTCGTTATGGTTTCGTA
TGTTTTTTTGGAAACGAAATTAAGTGATTTTATTGGCTAAAGATATTTAT
TCCAATGATTAACCAATAACATCCCATTCTCACAGTGGGACCCCCTACCA
CTGAAAAAATTGGTCAAAATATTGACCCAAGTGGAAAATTATATTCCAAT
TTTGTCCCCACTGAAAAAAGCGGAATAAACAAGTCCTCAGTGCAAAATTA
TATGCTGTTCTTTGCCATCCCCATTGAATTGAAAACAACGTTATTCGAGT
TCCAGCCATTAAGAACATTGGAATATCAATCCCGCCGACTTTCAGTCCGT
TTTTTATCACCATACCCGCTGACAAAATCCTACCGGATCTAAGAGAAGGG
TCCAATAGTCCAATAGAATAGCTTTATTTCGTTTAACTATATATTATAGA
ACCGTCGTAGCGTTTTTTTTGGTATAGTTTCGATTGGAAAGAATACTTCT
CAGAGTCGCG

Coding sequence (CDS) from alignment at scaffold_89:158105..169414-

>TCONS_00073262 ID=TCONS_00073262|Name=TCONS_00073262|organism=Clytia hemisphaerica|type=CDS|length=2433bp|location=Sequence derived from alignment at scaffold_89:158105..169414- (Clytia hemisphaerica)
ATGGAATGGGTCCTACTGAAAGTATGTCTTTTACTTGCAACCCGCATGTG
TCAAGAAACCTTAGCTGCCGTAATATCGCCGAATCATGATGGTAAAAAAA
TAGATTTAGAGAATAATGTTAGACAGAATTCAACAAAGGATCTTCGAAGT
TCACTACCAAGGCAACTAAGAATAAACAAAAATCAGGCAATCATTGTGAA
GGAACCACGAGATTTTAATATCATTTATGTTGAAAATCGAACCGCTATCG
TTGAAAGGTTCGAAAATGAAACAAAAACAATTGTTGATAGCAATGAAGTC
AAAACAAGATTATCTTTGAAAGATAAGTTACAATCCTTGGTTAAGAGAAA
AGGTATCACTATATCTTTACTAAATCAAGACCAAGAAAGCATGCTTAACC
TACGGACGAAAGATTGTATTTTACCAACCACGTTTGATGTTCTGATCGAA
ATTGTAACAAGATTTGAGCCAAAAGAACTAATTCTCATCTACCATTCGAA
GATTTTAAGTCAGGTAGATATAATAGACTGGAAAGAAAAAACCTCAAAAC
ACAAAGAATTTAAATTTATCGATTTTAAAATCAAAGAAGATGATCTTTAT
GACCATACAGGGAAGATTCTAAAAGAAATAAGTCGCTCCACGGATGTTAA
GCTGATTATCTTATTCACACCTTTGGAAATCACGAATCTCATTTTCCGGT
TACGCTCAGAAAAGTTCCGGATGATTACTGGAGGAACTTGGATTGTTGAT
AAGGGAATATATCCTGAAGCTGATCGGCCACCAAAAATGGCGGAATTTGA
ATATTTTAAATACCGTGTAGTGTTGAACTCAGCTTCCATGCGCTATGGAG
GCTCAATTTGTGATTTGGCAACTAAAATGGCAAGGAAAGTAATCGAAGAA
AAGCTATTGGCAGATGAAATACGAATGATCAGGCTTTGGCAACTCCAGAC
TTGGCGAACTGTATACAAAGTCTCATATTTGAACCAGCAGTATCAACTTT
CATCTCAAAGTATTTTCGGTAAAAACCAAAAGATCTCAGTAGTATCAAGA
CTCGATGAGCCTTTTTTGATGGAGAATTACATACCGTGTGAGCATTTCCA
ATGTCAAAAACATATCATGTCTTGTCGACTTCCTTTTCATAACAAAACAA
CTCATATCCGTGAGTGGAGGTCTTCTAAATGTAGTGGATACGTTGTAGAC
CTATTGTATGAGTTATCAGTAGAAATGCATACAGAATTCGAACTTTACGT
CGCCTTTGATGGGGAGTTCGGAAGATGCGTCAATCGTTCCACCAATGAAT
GGACAGGGATGATTGGAGATGTCCTGAGGCGAGAAGCTGATTTAGCTATC
CAGGGAATCACCATAACAGAAGAACGATTAAAAGTTGTCGATTTCACTTT
ACCATATTTGCAGAGTCGGATCGAGATTCTAACATTAAAGGAAATGCCAA
AAGAACAGTTGTTCTCCATGTATTTTCTTGAGTTATATGACTTAGAGGCA
AGATATGTTTTGGTGCCATTGTTTTTACTATCCATCTTATCAGTATATGT
ATCTGAAAACATAATCATCTTCAAATCTAATATAACAAAACGAAAACAGA
AGCGTAGAAACAAAATGGAGCTCAGAGATCTAGGTTTATATTTTGCAGGA
TCGGTGTTCCAAAAAGGTGATTTAGGAGCAGCAAACCCGAAGACTTATAG
TGGGCGTTTTGTAAGCTTGTCATGGTCATTTTGTTTCTTGGTGTTGACAT
CACTGTATACTGCTCTTTTAACAGCTGATCGTGTGGTGACTGGTGGATAT
AGCTCATTCCATGGCATGAAAGATCAGCGGATCTTAAACCCAACATCAGC
TTTCAAGTTTGGTACCATCAATAATACAGTCCTATCTGACTACTTTAAGA
CAGCGCCATTGGCAAGTGCTCTACGTATCCATCACTTTATGAAGCGTTAT
CACCAAAATGATTATAATGTTACATTACCACTCCTCGAAAGAAGCTATTT
GCATGCTTTCTTTGCAGAGCACGTTTTCGTGCTCCCGCACGTCAAGAAGT
ACGAATGCAAATTCAAGGCTCATAAAACACCAATCCCAGAGGCTAGTTAT
GGTGCTGTAGTGGCTAAAGGATCACCTCTAAAAGGACTTGTTTCACAGGC
TATTCTCAAACTTAACGATGCTAAAATTTTGGATGAGTTAAAGGAAAGAT
GGTTTACAAACGCATGTGAGAATACAGAATCGACGAATATAAACCCATTC
AACTTAATATTCTTTTCATCACTTTTCATGGTTTTATTGTTTGCTGTTGT
ACTATCTTTCATCGTATTAGGAATNAAATACAGAATCGACAAACATAAAC
CCATTCAACTTAATATTCTTTTCATCACTTTTTATGGTTTTATTGTTTGC
TGTTGTACTATCTTTCATCGTATTAGGAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045451XLOC_045451Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073262-exon-scaffold_89-1575043694:168428..169414TCONS_00073262-exon-scaffold_89-1575043694:168428..169414Clytia hemisphaericaexon
TCONS_00073262-exon-scaffold_89-1575043694:166703..167648TCONS_00073262-exon-scaffold_89-1575043694:166703..167648Clytia hemisphaericaexon
TCONS_00073262-exon-scaffold_89-1575043694:160190..160353TCONS_00073262-exon-scaffold_89-1575043694:160190..160353Clytia hemisphaericaexon
TCONS_00073262-exon-scaffold_89-1575043694:158105..159232TCONS_00073262-exon-scaffold_89-1575043694:158105..159232Clytia hemisphaericaexon
TCONS_00073262-exon-scaffold_89-1510915933:168428..169414TCONS_00073262-exon-scaffold_89-1510915933:168428..169414Clytia hemisphaericaexon
TCONS_00073262-exon-scaffold_89-1510915933:166703..167648TCONS_00073262-exon-scaffold_89-1510915933:166703..167648Clytia hemisphaericaexon
TCONS_00073262-exon-scaffold_89-1510915933:160190..160353TCONS_00073262-exon-scaffold_89-1510915933:160190..160353Clytia hemisphaericaexon
TCONS_00073262-exon-scaffold_89-1510915933:158105..159232TCONS_00073262-exon-scaffold_89-1510915933:158105..159232Clytia hemisphaericaexon
TCONS_00073262-exon-scaffold_89-1491911889:168428..169414TCONS_00073262-exon-scaffold_89-1491911889:168428..169414Clytia hemisphaericaexon
TCONS_00073262-exon-scaffold_89-1491911889:166703..167648TCONS_00073262-exon-scaffold_89-1491911889:166703..167648Clytia hemisphaericaexon
TCONS_00073262-exon-scaffold_89-1491911889:160190..160353TCONS_00073262-exon-scaffold_89-1491911889:160190..160353Clytia hemisphaericaexon
TCONS_00073262-exon-scaffold_89-1491911889:158105..159232TCONS_00073262-exon-scaffold_89-1491911889:158105..159232Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073262-proteinTCONS_00073262-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_89supercontigscaffold_89:158105..169414 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.342859	0.612865	0.574929	0.700202	0.181783	1.00097	0.448615	0.941525	0.151038	0.282529	0	0.174987	0.591025	1.47628	0.135394	0.177623	0	0.115993	0	0.0700914	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt
IPR019594Glu/Gly-bd
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
GO:0005234extracellular-glutamate-gated ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
Blast
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BLAST of TCONS_00073262 vs. Swiss-Prot (Human)
Match: NMDZ1 (Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens GN=GRIN1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.981e-32
Identity = 104/431 (24.13%), Postives = 195/431 (45.24%), Query Frame = 2 
Query: 1226 CRLPFHNKTTHIREWRSSKCSGYVVDLLYELSVEMHTEFELYVAFDGEFG---RCVNRSTNEWTGMIGDVLRREADLAIQGITITEERLKVVDFTLPYLQSRIEILTLKEMPKE------QLFSMYFLELYDLEARYVLVPLFLLSILSVYVSENIIIFKSNITKRKQKRRNKMELRDLGLYFAGSVFQKGDLGAANPKTYSGRFVSLSWSFCFLVLTSLYTALLTADRVVTGGYSSFHGMKDQRILNPTSAFKFGTINNTVLSDYFKTAPLASALRIHHFMKRYHQNDYNVTLPLLERSYLHAFFAEHVFVLPHVKKYECKFKAHKTPIPEASYGAVVAKGSPLKGLVSQAILKLNDAKILDELKERWFTNACENTESTNINPFNLIF--FSSLFMVLLFAVVLSFIVLGXKYRIDKHKPIQLNILFITF 2485
            C  P        R      C G+ +DLL +L+  M+  +E+++  DG+FG   R  N +  EW GM+G++L  +AD+ +  +TI  ER + ++F+ P+    + IL  KE+P+       Q F      L  L    V V L+LL   S +       FK N    +++  + + L    ++F+  V     +G   P+++S R + + W+   +++ + YTA L A  V+        G+ D R+ NP+  F + T+  + +  YF+     S +  H  M++++       +  +  + LHAF  +   VL      +C           + +G  + K SP K  VS +ILK ++   +++L + W     +  +S +  P  L F   + +FM++   +V    ++  +    +HK  +   + + F
Sbjct:  436 CTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFSPFGR-----FKVN---SEEEEEDALTLSS-AMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRH--MEKHNYESAAEAIQAVRDNKLHAFIWDSA-VLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVR--YQECDSRSNAPATLTFENMAGVFMLVAGGIVAGIFLIFIEIAYKRHKDARRKQMQLAF 852
The following BLAST results are available for this feature:
BLAST of TCONS_00073262 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMDZ13.981e-3224.13Glutamate receptor ionotropic, NMDA 1 OS=Homo sapi... [more]
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