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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073303 ID=TCONS_00073303|Name=TCONS_00073303|organism=Clytia hemisphaerica|type=transcript|length=2581bpRun BLAST on NCBI protein sequence of TCONS_00073303-protein >TCONS_00073303-protein ID=TCONS_00073303-protein|Name=TCONS_00073303-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp MATKRNMILRIQTPEGMRRIQVGGADTVNTLYEKVQSFLKLQTNGWSIYKRun BLAST on NCBI transcript from alignment at scaffold_9:112670..134111+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073303 ID=TCONS_00073303|Name=TCONS_00073303|organism=Clytia hemisphaerica|type=transcript|length=21442bp|location=Sequence derived from alignment at scaffold_9:112670..134111+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_9:112670..134111+ >TCONS_00073303 ID=TCONS_00073303|Name=TCONS_00073303|organism=Clytia hemisphaerica|type=CDS|length=1899bp|location=Sequence derived from alignment at scaffold_9:112670..134111+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073303 vs. Swiss-Prot (Human)
Match: NPL4 (Nuclear protein localization protein 4 homolog OS=Homo sapiens GN=NPLOC4 PE=1 SV=3) HSP 1 Score: 589.341 bits (1518), Expect = 0.000e+0 Identity = 289/628 (46.02%), Postives = 414/628 (65.92%), Query Frame = 3
Query: 228 NMILRIQTPEGMRRIQVGGADTVNTLYEKVQSFLKLQTNGWSIYKDRGLNDELSKSSRKTLKGLQLNHGDVIYMKETGHFVSNSPTSMDDRPXXXXXXXXXXXXXEKEDNTSKLDVVEDEIDVLLSHQSGLIKRDRHPLLCRHGKQGQCLNCAPLEPYNEDYLKSLKPPAKHLSFHAYLKKMKSGVAKGKYISLEDVNCKIKPGCTEHPPWPKGICTKCQPGAVMLNRQTYRHVDNIMFENPVIMDRFLNYWRKTGGQRIGILYGKYEKHENVPLGIRATVAAIYEPPQDSNKDRIQLLPNPQQESVDILASYFGLKQVGWIVTDLIPDTEKAGLVKHLRHAKTHFLSAQECMMAADYQNKHPNPSKESKTGRFGSKFVTVVVSGDEEQHIHYEGWQVSNQCMALVRDQCLVPTVDDSALGYIKESSSEQFVPDVFYKVKDEYGNEVTKIGRPMPIEYFLIEVPAGFPMEPQSTF-ISSDPTNLFPIENRTQMMENQNFETLTQHLNRLKSSDVNXXXXXXXXXXXXXIMTNEFISIRHKMSDLCKALKQRDQMLFHQWLESDEWKTVETMVQTHAPMATDSPMDGSDAVPMETDNSVTITGWTCPHCTFINKNPTSDTCDMCTLPKS 2108
++I+R+Q+P+G++RI +T T +KV Q NG+S+Y +R E++ SS K+L L++ HGD++++ + +S P +VVEDEID LS Q G I R R P LCRHG G+C++C PLEP++EDYL L+PP KH+SFHAY++K+ G KGK+++LE+++CKIK GC H PWP GICTKCQP A+ LNRQ YRHVDNIMFEN + DRFL++WRKTG Q G LYG+Y +H+++PLGIRA VAAIYEPPQ ++ ++LL +P+ E VD +A+ GL++VGWI TDL+ + + G V++ R+ T+FLS++EC+ A D+QNKHPN + S G FGSKFVT V +G + +H+EG+QVSNQCMALVRD+CL+P D LGY KESSSEQ+VPDVFYK D++GNE+T++ RP+P+EY +I++ FP +P TF IS +P FPIENR + E Q+F +L +L++ SS L+ DFH LLF++TNE + ++ +S L +A++ R++ L W S++W T+E + T + P + ++ T W C HCTF+N+ P + C+MC+LP++
Sbjct: 4 SIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSNKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAP--------------NVVEDEIDQYLSKQDGKIYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKFVALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDFWRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIAAKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPDGHFGSKFVTAVATGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQYVPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNP---FPIENRDVLGETQDFHSLATYLSQNTSSVF--LDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELAQTWKRSEQWATIEQLCST---VGGQLPGLHEYGAVGGSTHTATAAMWACQHCTFMNQ-PGTGHCEMCSLPRT 608 The following BLAST results are available for this feature:
BLAST of TCONS_00073303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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