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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073320 ID=TCONS_00073320|Name=TCONS_00073320|organism=Clytia hemisphaerica|type=transcript|length=2313bpRun BLAST on NCBI protein sequence of TCONS_00073320-protein >TCONS_00073320-protein ID=TCONS_00073320-protein|Name=TCONS_00073320-protein|organism=Clytia hemisphaerica|type=polypeptide|length=551bp FRPFGWNWWKYLFLLGFSITGAVSVKYAGVLSIIVIGALIGYELWLLVGDRun BLAST on NCBI transcript from alignment at scaffold_9:257991..265395- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073320 ID=TCONS_00073320|Name=TCONS_00073320|organism=Clytia hemisphaerica|type=transcript|length=7405bp|location=Sequence derived from alignment at scaffold_9:257991..265395- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_9:257991..265395- >TCONS_00073320 ID=TCONS_00073320|Name=TCONS_00073320|organism=Clytia hemisphaerica|type=CDS|length=1656bp|location=Sequence derived from alignment at scaffold_9:257991..265395- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073320 vs. Swiss-Prot (Human)
Match: POMT1 (Protein O-mannosyl-transferase 1 OS=Homo sapiens GN=POMT1 PE=1 SV=3) HSP 1 Score: 413.69 bits (1062), Expect = 4.296e-132 Identity = 227/577 (39.34%), Postives = 352/577 (61.01%), Query Frame = 1
Query: 7 PFGWNWWKYLFLLGFSITGAVSVKYAGVLSIIVIGALIGYELWLLVGDITV------------PVK----------SVYKHITARFIFLIVMPIVLYIGQFYIMLSVLQKTGLHDGLMSSSFQKTLEGGLESITKNQAQIISYGSHITLRNTHSKQ--CWLHSHKHLYPVKYEDGRGSSAQQQVTCYAFKDINNWFIVKHPDSDSLKVDFPPRPVKNGDVIHLVHGLTGRGISSHDVGAPVNPTLMEISGYVDHNVSMDAQYGWKLQIVNP-DESELWRAIGSQVRFVHVNTSAAIKVSGSTLPEWGFRQYEVGTDR--RINTQESIWNVEEHNQNVTKPEDMSDEEAKRVLSEHAERYQVSGKTHAMSFFQKFLEYQIKMFKVNNDLTNGHAFASKPMHWPLMLKGVAYWLDTYTNKQIFIIGNPIVYWLGAISXXXXXXXXXXXXXRRKRQCYDLDNAEWNNFSIGCYLLIGGFLLNWLPYFPVERTLFLHNYLPALIFKIILIPMLMDHVHSVWFKNFPILQYGVKAASVLI-VGLVVFVFQYFSAFTYGVTALSQRDIEQKRWLSSWRFMIHR 1653
PF +WW +L L G + + AV +KY GV + +++ + W L+GD T+ P V+ H+ AR + L+V+P+VLY+ FY+ L ++ ++G HD +MSS+FQ +LEGGL IT+ Q +++GS +TLRN K CWLHSH+ YP+ YE+GRGSS QQQVTCY FKD+NNW+IVK P L V PPRPV++GD++ LVHG+T R +++HDV AP++P E+S Y+D+N+SM AQ W+L+IVN ++++W+ I S+VRFVHVNTSA +K+SG+ LP+WG+RQ E+ ++ R ++WNVEEH ++ + E +R L A+ + +SF +F E Q +M + +D + H ++S P+ W + +AYWL T+ QI ++GN +++ G+++L IY L YLLRR+R +DL W + + L GG+ +N+LP+F +E+TLFL++YLPAL F+I+L+P+++ H+ ++ LQ + +A V+ V TYG +LS +++ RW SW +I +
Sbjct: 181 PFSLSWWFWLTLTGVACSCAVGIKYMGVFTYVLVLGVAAVHAWHLLGDQTLSNVGADVQCCMRPACMGQMQMSQGVCVFCHLLARAVALLVIPVVLYLLFFYVHLILVFRSGPHDQIMSSAFQASLEGGLARITQGQPLEVAFGSQVTLRNVFGKPVPCWLHSHQDTYPMIYENGRGSSHQQQVTCYPFKDVNNWWIVKDPRRHQLVVSSPPRPVRHGDMVQLVHGMTTRSLNTHDVAAPLSPHSQEVSCYIDYNISMPAQNLWRLEIVNRGSDTDVWKTILSEVRFVHVNTSAVLKLSGAHLPDWGYRQLEIVGEKLSRGYHGSTVWNVEEHRYGASQEQ----RERERELHSPAQ----VDVSRNLSFMARFSELQWRMLALRSD-DSEHKYSSSPLEWVTLDTNIAYWLHPRTSAQIHLLGNIVIWVSGSLALAIYALLSLWYLLRRRRNVHDLPQDAWLRWVLAGALCAGGWAVNYLPFFLMEKTLFLYHYLPALTFQILLLPVVLQHISDHLCRS--QLQRSIFSALVVAWYSSACHVSNTLRPLTYGDKSLSPHELKALRWKDSWDILIRK 746 The following BLAST results are available for this feature:
BLAST of TCONS_00073320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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