|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073349 ID=TCONS_00073349|Name=TCONS_00073349|organism=Clytia hemisphaerica|type=transcript|length=4819bpRun BLAST on NCBI protein sequence of TCONS_00073349-protein >TCONS_00073349-protein ID=TCONS_00073349-protein|Name=TCONS_00073349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=807bp MPYLLNIRNPFGLSPHGAYPSQQNEEFSKISKSEAEARHQAVSTYLQMWARun BLAST on NCBI transcript from alignment at scaffold_90:54729..81843+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073349 ID=TCONS_00073349|Name=TCONS_00073349|organism=Clytia hemisphaerica|type=transcript|length=27115bp|location=Sequence derived from alignment at scaffold_90:54729..81843+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_90:54729..81843+ >TCONS_00073349 ID=TCONS_00073349|Name=TCONS_00073349|organism=Clytia hemisphaerica|type=CDS|length=2424bp|location=Sequence derived from alignment at scaffold_90:54729..81843+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073349 vs. Swiss-Prot (Human)
Match: TREF1 (Transcriptional-regulating factor 1 OS=Homo sapiens GN=TRERF1 PE=1 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 3.492e-34 Identity = 75/189 (39.68%), Postives = 114/189 (60.32%), Query Frame = 1
Query: 2713 TVTPT-NEEEINVTTVASDPTEPKINVGPEFQAVLPHVLNRTEAQKDSHRASLMWSPLKEDEQK--QKEVEAYLDMACSLVLYGGSNNKEYALHILQRTRGNVKEAVRLLLSRRHILRADDPNADYHYSGSVRWTAKERLAFRQAYRSKGKIFMGIQKEVETKSVQQCVEFYYLWKAMHPESFRARTRM 3270
TVTP E+ ++V EP+IN+G FQA +P + + + +D+H+A+L+W P E E Q+ VE L++ CS L GG N E+ALH L +G+V A+ +LL R+ + P A+YHY+GS +WT+ ER F +A + K F+ +QK V++K+V QCVE+YY WK + + RTR+
Sbjct: 765 TVTPGPGEQTVDV--------EPRINIGLRFQAEIPELQDISALAQDTHKATLVWKPWPELENHDLQQRVENLLNLCCSSALPGGGTNSEFALHSLFEAKGDVMVALEMLLLRKPVRLKCHPLANYHYAGSDKWTSLERKLFNKALATYSKDFIFVQKMVKSKTVAQCVEYYYTWKKIMRLGRKHRTRL 945 The following BLAST results are available for this feature:
BLAST of TCONS_00073349 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.