|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073410 ID=TCONS_00073410|Name=TCONS_00073410|organism=Clytia hemisphaerica|type=transcript|length=1990bp
AGGAACTCTATGTGGACAATGTACACCCGGCTATCACCAGAGCTATTTCT
CAACAAATTGTatcgaaaattcaaaatgcagtacaaagaatcaaagaaaa
ttttggacAGTTTATGTATTTACAGCGTTCCTTTTGACTTGTGTTATTTT
GAGTACCAAAGATTTTGCAGTTGTTTTAGTAGCCTTTGTCGCACAGGTCC
GAAACCTCTTCAAATGTTTGAAGATCAAACTCTTTGGCAATAAAGACGAG
AATATTTCACGTATCAACTCCTGTATATCTTATAACAACATTCGAATCAA
AAACAAATGTCtgataaaagaagaaaaaccaCGTCAATACATTTTTTCGG
CAGTCCTTCAAATTACCCTATCATTTTTCCAGATAGTAAGCTTACTATCA
ATAAGGAACGACTCAGATACAAACAAAATGATGACCCGAATGGTCaatct
ttttaatttacaaCTGGCTGTCAAACAAGCAGAAGAATTTTGCCCATTTG
AAGGAATCGAGATTATTTGGACAAACTTTTTAAAGAATGTTTTGTTTATT
CTtttgatgttgttgtttttggtcATCTTCAGCTTGATTCATAACTTAAT
CTGTTTCTTGTTTTGTGGAAAGAAAGCCGGACCGGAATATCAACAAAATA
GCACAGATACCGAAAAATATGATGACGAAAACCGAAACACAAACGAAAGG
GTCATCAAGGAGGCGATCACCAAAACATACAAACCAAGCCTTTTCCAAGA
ACTTCTTCAAATATCATTCACCGACAAACTCATCTTAACCTTCATCAAAA
TCTTAATGTTTGGTTACAAAAACATATCTTTATTCACAATCGTTTCTTTG
AATTGTGTAAAAATTTATGGTGAACCTGTCCTCTATATCTCTGGTAATAT
CAAATGCTACCAACCTTGGCAATGGAGTCTATTAGCACTCCTTATCTTAT
GGGTAGTCCCATTCCCAGTAGCGTTAGTCTTGGCATACCGACTTTACCAG
AAAGGTATTATTTCTAAGATCGAATATATCACCATCCTAATATTCCCAAT
ATTAGCATTTGGGTTGTATTTTTATCACCATGGAACGCGTAGCCGGACCT
TAGGCCCCTGTCAGGAAGGGCTTCTTGGTGCCTTATCAGATATCTTTGAA
GAACCATATCGAGTGACTCAAACAGCGACAGAAGATTGCGAAATCGAAGA
GGAAACACTCTACTGGTGGACAGCATGGAGGCTTTACGAACGGCTCTTGA
TTGCCGTGTTGGTAACATTTATTATTGAGCCGTTATTCAGAATGTGTGTT
ATAGCACCGGTAATTGCGTTCCTATCCATACTCCATTACCAGATCAAACC
GTATAAAGAAACAATGACTTTATTATCGTTGCTTGATATTTCGTCGTACG
TTTTCTTGACGTTTTACGTCGTTGATAACATGTTCCGATCGTTTGCATAC
ACGTTCGATTTACCGTTGCAGAATCCTATTGACCGTGGTTTGAAACTTTT
GGGCGTTTTTGAAGCGTTATTGACACCATTGACTgtgatttgtttatttg
ttatTGCTTCAATAGCTCGAGCCGTGTATGAAATTGTTCGAAATACGGCC
AAAAAATGCGAATGAAAGTTATTTGATActacaaagattttttaacaccc
ctgtccAGTGACAGTTCCACCTAGAATTTCTTCTAAACAGCAAATTTGGA
GAAGAAATTGGAAAGTCGTCTTTTTAACgtaaaatgatttcaaattctAG
TGTGGAAATTTTAGGTAATTTTTTCACCGGGGTCAATTTTATGTATTTTA
GGTAAATTTTCAAGTAAGGGTTTCAGTAAGGGTCAGTATTTGTGACAAGT
AGATATTGGTTACCATAGACTACCTAAGAACGACTTAAATCTTTGaggcc
ttcggatgtttttaactttttgagttgtaagcttaaaagttttcttaaca
tgttctcatattttcaccgttttctgagtatttttgccca Run BLAST on NCBI protein sequence of TCONS_00073410-protein >TCONS_00073410-protein ID=TCONS_00073410-protein|Name=TCONS_00073410-protein|organism=Clytia hemisphaerica|type=polypeptide|length=537bp
GTLCGQCTPGYHQSYFSTNCIENSKCSTKNQRKFWTVYVFTAFLLTCVIL
STKDFAVVLVAFVAQVRNLFKCLKIKLFGNKDENISRINSCISYNNIRIK
NKCLIKEEKPRQYIFSAVLQITLSFFQIVSLLSIRNDSDTNKMMTRMVNL
FNLQLAVKQAEEFCPFEGIEIIWTNFLKNVLFILLMLLFLVIFSLIHNLI
CFLFCGKKAGPEYQQNSTDTEKYDDENRNTNERVIKEAITKTYKPSLFQE
LLQISFTDKLILTFIKILMFGYKNISLFTIVSLNCVKIYGEPVLYISGNI
KCYQPWQWSLLALLILWVVPFPVALVLAYRLYQKGIISKIEYITILIFPI
LAFGLYFYHHGTRSRTLGPCQEGLLGALSDIFEEPYRVTQTATEDCEIEE
ETLYWWTAWRLYERLLIAVLVTFIIEPLFRMCVIAPVIAFLSILHYQIKP
YKETMTLLSLLDISSYVFLTFYVVDNMFRSFAYTFDLPLQNPIDRGLKLL
GVFEALLTPLTVICLFVIASIARAVYEIVRNTAKKCE Run BLAST on NCBI transcript from alignment at scaffold_91:355379..358321- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073410 ID=TCONS_00073410|Name=TCONS_00073410|organism=Clytia hemisphaerica|type=transcript|length=2943bp|location=Sequence derived from alignment at scaffold_91:355379..358321- (Clytia hemisphaerica)
AGGAACTCTATGTGGACAATGTACACCCGGCTATCACCAGAGCTATTTCT
CAACAAATTGTATCGAAAATTCAAAATGCAGTACAAAGAATCAAAGAAAA
TTTTGGACAGTTTATGTATTTACAGCGTTCCTTTTGACTTGTGTTATTTT
GAGTACCAAAGATTTTGCAGTTGTTTTAGTAGCCTTTGTCGCACAGGTAA
GAAACATTGAATTTGCTTTGAGTTAGCCTGTAGAAGTAAGGTTTAGATTA
TGATCTGGACTTACCCACGCATTACGAACTTTGTACATTAAGTGGAACTT
GAATTTATTAAATCGCTCTTTTTACTTACTATCTAAATTATAAAACATTA
TGATTTGCTTATCGATACAGTTAAAAGTCTTTAAAAACTTGGGATCTTTT
AGGGTTAAGCAAAGTTGTAGCTGTACTATTTGAGAATATACCATCTTTGA
AGTCAAAGCTGTTTGTAAAAACTGGTCCATTTTTCCTGTTTGAATAGAAG
AGAAGTGTAATGATGATTCGAATTCTATGTGTTTCAGGTCCGAAACCTCT
TCAAATGTTTGAAGATCAAACTCTTTGGCAATAAAGACGAGAATATTTCA
CGTATCAACTCCTGTATATCTTATAACAACATTCGAATCAAAAACAAATG
TCTGATAAAAGAAGAAAAACCACGTCAATACATTTTTTCGGCAGTCCTTC
AAATTACCCTATCATTTTTCCAGATAGTAAGCTTACTATCAATAAGGAAC
GACTCAGATACAAACAAAATGATGACCCGAATGGTCAATCTTTTTAATTT
ACAACTGGCTGTCAAACAAGCAGAAGAATTTTGCCCATTTGAAGGAATCG
AGATTATTTGGACAAACTTTTTAAAGAATGTTTTGTTTATTCTTTTGATG
TTGTTGTTTTTGGTCATCTTCAGCTTGATTCATAACTTAATCTGTTTCTT
GTTTTGTGGAAAGAAAGCCGGACCGGAATATCAACAAAATAGCACAGATA
CCGAAAAATGTAAGTATAGTTCCCCTGATATCTGTAGATCTCCACCACGT
TATACGCGAGATACACTCTGGTACAGAATAGCGAATTCTTAGCAAGCTAA
GTGCATTGATTAACATTAATATGCACTTGAGGGGGCAAACTGAATATTCA
AACCGTCAAATCGTATTTTTTGTGCTTTGGACCAGCGAAATTTTTCAATA
ATAAGATGCTTGTACTTTAAATGTAAAGTTGCTCGTTGGTCATTTTCTAA
CATATGGATTTGACCATTTTTTGACCATTTTTTCTCCAGTATTTACTATT
AACAATCATGGTCATAATATTTGAGAAAAAAGGGAAATTCCCCAGGAAGT
TTTGAAACCACAATCGATCTGTAAGCGCTCTAAAGTAGGTTCGAAGGGTA
GAGTTTTAAATCCGAGTTTTAATGCTAGACTTAAGACTTAAGATCTGAGG
ATCCAAAAGTTTAAAAATAATCCAATAAGACTCAGAATGTAGCCTGGAAG
TCTGCCAACCCATCCCAAATTGAAATATTCGATCAAATTAAAAAAAATCG
ACTTTCTCGTCGGAACTTTAAATCTTGAAAAATGTTAAAATAACCGGAAT
TCTCAATATATTTCGATGTAGATGATGACGAAAACCGAAACACAAACGAA
AGGGTCATCAAGGAGGCGATCACCAAAACATACAAACCAAGCCTTTTCCA
AGAACTTCTTCAAATATCATTCACCGACAAACTCATCTTAACCTTCATCA
AAATCTTAATGTTTGGTTACAAAAACATATCTTTATTCACAATCGTTTCT
TTGAATTGTGTAAAAATTTATGGTGAACCTGTCCTCTATATCTCTGGTAA
TATCAAATGCTACCAACCTTGGCAATGGAGTCTATTAGCACTCCTTATCT
TATGGGTAGTCCCATTCCCAGTAGCGTTAGTCTTGGCATACCGACTTTAC
CAGAAAGGTATTATTTCTAAGATCGAATATATCACCATCCTAATATTCCC
AATATTAGCATTTGGGTTGTATTTTTATCACCATGGAACGCGTAGCCGGA
CCTTAGGCCCCTGTCAGGAAGGGCTTCTTGGTGCCTTATCAGATATCTTT
GAAGAACCATATCGAGTGACTCAAACAGCGACAGAAGATTGCGAAATCGA
AGAGGAAACACTCTACTGGTGGACAGCATGGAGGCTTTACGAACGGCTCT
TGATTGCCGTGTTGGTAACATTTATTATTGAGCCGTTATTCAGAATGTGT
GTTATAGCACCGGTAATTGCGTTCCTATCCATACTCCATTACCAGATCAA
ACCGTATAAAGAAACAATGACTTTATTATCGTTGCTTGATATTTCGTCGT
ACGTTTTCTTGACGTTTTACGTCGTTGATAACATGTTCCGATCGTTTGCA
TACACGTTCGATTTACCGTTGCAGAATCCTATTGACCGTGGTTTGAAACT
TTTGGGCGTTTTTGAAGCGTTATTGACACCATTGACTGTGATTTGTTTAT
TTGTTATTGCTTCAATAGCTCGAGCCGTGTATGAAATTGTTCGAAATACG
GCCAAAAAATGCGAATGAAAGTTATTTGATACTACAAAGATTTTTTAACA
CCCCTGTCCAGTGACAGTTCCACCTAGAATTTCTTCTAAACAGCAAATTT
GGAGAAGAAATTGGAAAGTCGTCTTTTTAACGTAAAATGATTTCAAATTC
TAGTGTGGAAATTTTAGGTAATTTTTTCACCGGGGTCAATTTTATGTATT
TTAGGTAAATTTTCAAGTAAGGGTTTCAGTAAGGGTCAGTATTTGTGACA
AGTAGATATTGGTTACCATAGACTACCTAAGAACGACTTAAATCTTTGAG
GCCTTCGGATGTTTTTAACTTTTTGAGTTGTAAGCTTAAAAGTTTTCTTA
ACATGTTCTCATATTTTCACCGTTTTCTGAGTATTTTTGCCCA Coding sequence (CDS) from alignment at scaffold_91:355379..358321- >TCONS_00073410 ID=TCONS_00073410|Name=TCONS_00073410|organism=Clytia hemisphaerica|type=CDS|length=1614bp|location=Sequence derived from alignment at scaffold_91:355379..358321- (Clytia hemisphaerica)
GGAACTCTATGTGGACAATGTACACCCGGCTATCACCAGAGCTATTTCTC
AACAAATTGTATCGAAAATTCAAAATGCAGTACAAAGAATCAAAGAAAAT
TTTGGACAGTTTATGTATTTACAGCGTTCCTTTTGACTTGTGTTATTTTG
AGTACCAAAGATTTTGCAGTTGTTTTAGTAGCCTTTGTCGCACAGGTCCG
AAACCTCTTCAAATGTTTGAAGATCAAACTCTTTGGCAATAAAGACGAGA
ATATTTCACGTATCAACTCCTGTATATCTTATAACAACATTCGAATCAAA
AACAAATGTCTGATAAAAGAAGAAAAACCACGTCAATACATTTTTTCGGC
AGTCCTTCAAATTACCCTATCATTTTTCCAGATAGTAAGCTTACTATCAA
TAAGGAACGACTCAGATACAAACAAAATGATGACCCGAATGGTCAATCTT
TTTAATTTACAACTGGCTGTCAAACAAGCAGAAGAATTTTGCCCATTTGA
AGGAATCGAGATTATTTGGACAAACTTTTTAAAGAATGTTTTGTTTATTC
TTTTGATGTTGTTGTTTTTGGTCATCTTCAGCTTGATTCATAACTTAATC
TGTTTCTTGTTTTGTGGAAAGAAAGCCGGACCGGAATATCAACAAAATAG
CACAGATACCGAAAAATATGATGACGAAAACCGAAACACAAACGAAAGGG
TCATCAAGGAGGCGATCACCAAAACATACAAACCAAGCCTTTTCCAAGAA
CTTCTTCAAATATCATTCACCGACAAACTCATCTTAACCTTCATCAAAAT
CTTAATGTTTGGTTACAAAAACATATCTTTATTCACAATCGTTTCTTTGA
ATTGTGTAAAAATTTATGGTGAACCTGTCCTCTATATCTCTGGTAATATC
AAATGCTACCAACCTTGGCAATGGAGTCTATTAGCACTCCTTATCTTATG
GGTAGTCCCATTCCCAGTAGCGTTAGTCTTGGCATACCGACTTTACCAGA
AAGGTATTATTTCTAAGATCGAATATATCACCATCCTAATATTCCCAATA
TTAGCATTTGGGTTGTATTTTTATCACCATGGAACGCGTAGCCGGACCTT
AGGCCCCTGTCAGGAAGGGCTTCTTGGTGCCTTATCAGATATCTTTGAAG
AACCATATCGAGTGACTCAAACAGCGACAGAAGATTGCGAAATCGAAGAG
GAAACACTCTACTGGTGGACAGCATGGAGGCTTTACGAACGGCTCTTGAT
TGCCGTGTTGGTAACATTTATTATTGAGCCGTTATTCAGAATGTGTGTTA
TAGCACCGGTAATTGCGTTCCTATCCATACTCCATTACCAGATCAAACCG
TATAAAGAAACAATGACTTTATTATCGTTGCTTGATATTTCGTCGTACGT
TTTCTTGACGTTTTACGTCGTTGATAACATGTTCCGATCGTTTGCATACA
CGTTCGATTTACCGTTGCAGAATCCTATTGACCGTGGTTTGAAACTTTTG
GGCGTTTTTGAAGCGTTATTGACACCATTGACTGTGATTTGTTTATTTGT
TATTGCTTCAATAGCTCGAGCCGTGTATGAAATTGTTCGAAATACGGCCA
AAAAATGCGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073410-exon-scaffold_91-1575043694:358126..358321 | TCONS_00073410-exon-scaffold_91-1575043694:358126..358321 | Clytia hemisphaerica | exon |
| TCONS_00073410-exon-scaffold_91-1575043694:357313..357784 | TCONS_00073410-exon-scaffold_91-1575043694:357313..357784 | Clytia hemisphaerica | exon |
| TCONS_00073410-exon-scaffold_91-1575043694:355379..356700 | TCONS_00073410-exon-scaffold_91-1575043694:355379..356700 | Clytia hemisphaerica | exon |
| TCONS_00073410-exon-scaffold_91-1510915933:358126..358321 | TCONS_00073410-exon-scaffold_91-1510915933:358126..358321 | Clytia hemisphaerica | exon |
| TCONS_00073410-exon-scaffold_91-1510915933:357313..357784 | TCONS_00073410-exon-scaffold_91-1510915933:357313..357784 | Clytia hemisphaerica | exon |
| TCONS_00073410-exon-scaffold_91-1510915933:355379..356700 | TCONS_00073410-exon-scaffold_91-1510915933:355379..356700 | Clytia hemisphaerica | exon |
| TCONS_00073410-exon-scaffold_91-1491911889:358126..358321 | TCONS_00073410-exon-scaffold_91-1491911889:358126..358321 | Clytia hemisphaerica | exon |
| TCONS_00073410-exon-scaffold_91-1491911889:357313..357784 | TCONS_00073410-exon-scaffold_91-1491911889:357313..357784 | Clytia hemisphaerica | exon |
| TCONS_00073410-exon-scaffold_91-1491911889:355379..356700 | TCONS_00073410-exon-scaffold_91-1491911889:355379..356700 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_91 | supercontig | scaffold_91:355379..358321 - |
Blast
The following BLAST results are available for this feature:
|
