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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073459 ID=TCONS_00073459|Name=TCONS_00073459|organism=Clytia hemisphaerica|type=transcript|length=2415bp
AACTTGATTCCGCCATTCAAAAATGCAAAATCATAAAAGGGTTTTCATCG
TCCATAAGGGTGACACGCAACACGCAACCAAGAGTTCTAAACAATCTAAA
CAATCTTAATCTGTTTCTTTCATTGATTAAATCCAACTAACACTTTCCTC
CTTTTCAGCGGCGTTACGATTTTGTCGTCGCATCATCCAACACAAGGACG
ATATGTACAACAAATACATTATTGTCGGCCGACTCTTCAAACCCATTGTG
CAAGCTTTCCTTGTCAATGGACAACGATACAATCTTCTCAACTCCGCCAT
CTTAGAACTTTTCCAATTCATTTTAAATGAGGACATAAAAAGTCTGGTAG
CCTACATAGTTGAAAATCATATTCAAGCATTTCGAGATATCACGTATGTT
GACACGTTCGCGGCACTTGCTGTCCGCTATGAACATCAAAACCAAGAGAA
ACGAAGGCTGGATGATTCCCAAGACAGAGATTCTGGGTACGCTTACGGTG
GCGGTGGTATTATTCACGATCAGCCTTCATCACGCGAGAAACGTGACGAT
CGAACGATGGACTCGTACGAAGAAGCTTGGTTTCGTTctgacgatgatga
tgatgaactACCAGAACTTCCGACCGATCAAACCATTCCCCCTTCTACTG
AGATCGCCGATGGCGCCACCACCAAACCGCTCAGTGCCAAACTCAAAGAT
GTCGAACTTTTAGATAACAAGAACTCTTCTGAGACTCACAATGCTACAAA
TGGACCATCAAGTCCTGTACATAATAATAATTCCCCGATTACCGATCATA
TAAACAGCCAACCAAATCATAATTCCGATACGGAAAAATCGGATTCAGTA
TTTTCTACGAATAACAAGACATTTAATAATAAACCCTTGATGAATAATCG
TTTGATTCAGAACAAGTTTCAGATCAAAATCAACTCCACTATATCTTCGT
TGGCGAATCACGCGGACGAACTTAAGAATGGCGATACACCGAAAACGACC
GGCGATCAGCCGATGGAGGTCGACGACGCCTCGCCTACTGCTAAAACGAA
ACCGTTGTTGGGAGGTCTGGTAGATTATCCCAGTGATGATGATGACGAGG
ATGAAGAATCCCGCCTTCAAAACAACACGCCCACCGCTACCCCGCCCATC
GAAAACGAAGTCCCTATTTCACCGGCAAAGAAGCAGCGTATAAGTTCCAG
TTGAATAGAGATCAGTGTTGTGGCCATTGGTTGAAAGGCATTTCTTTCTC
GAGCGATCGGTCGCTGGAATCGACGTAAAGTTCGCCTTAGTACGATAGCT
TTCTTCAGGTTAGAAAGCTCTGGACAATTCTTGTCCGTAGAAGGATCCTT
GATATTtgggaaattttaaaagaatggaATTTTCTTGTGGATATAACTCT
TTGAcgaatgttttttatttgtgcTTCAAAAAACGAGAATTGATACCCAC
CCGCGCTCGCCCGCTCAAACGCCGCCCGTCAGAAGGATGTACCCTTACTG
CTGTCGAATGATTGATATAATGAAACGAAATGGAATTTTTGATATGATTT
TGAAATTGGTGGCAAAAAATTGAACAatgtttttacgttttctgtAAAAA
ATGCGGAATGTTTTTAATCTCACGACTGTTTCTCCTGTTCTAATGATACT
CAAGGATATTTTATCTTGGTTTTAGCTCCCCTCAGTCCCGAAATTTAGTT
AGGGAACAACTGACCctgattttttattcaatttttcatgttttcaaagT
AGGTCAAGTGTGACAAAGTAGACTGGTTCCGTCATCCTGTATATCGACGA
GATCACTCCCTATACCTGGCGCCGTCTTCTAGTAGAACTTCTTTTGTTAT
TCTTTCTGGGGAGTGAATTGTCGGTTGGTATCCATGGTGATATACGTTAT
CATACTTGATCTCTCTTTAATGATCGATCAGCCGAAAGACGTTTGCTCTA
CTAAATGATCTACAGTAAACTCTCGGTTATTCTTACCCCATCTTAAAAAT
TAGATTTGAGCGATCGACCAACTAATTCGACTAAATAACGTCCTCTATAC
AttcaaaaattcgaaacaaCTGTATGTTACATAGGGGATCTCTCGATCTC
ATGTTTTGGCTCTAATTTTAAcgactttaaaaagaaaaatgggaaaagaa
cattttttgacaAGATTGATTTGCCCAACGGAGTAagttttctagatttt
catatATGCTTCATTCTCGTCGACTTGGTCTCTTAGAGTTCTACCAAAAA
GCGCCATCAGTGTCTTTTCTGAAAGGTGAACCGTCTCCTCGGCTGTCCAT
TGTTTTTATATCATGTTATTAGACAAATAGACAGACAGATGTAAATATGT
AAtgtttttacttcttttttccACTGAAAACGTCAGATAATGCGAAAAAT
ACaatcgaaaaaaag Run BLAST on NCBI protein sequence of TCONS_00073459-protein >TCONS_00073459-protein ID=TCONS_00073459-protein|Name=TCONS_00073459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
MYNKYIIVGRLFKPIVQAFLVNGQRYNLLNSAILELFQFILNEDIKSLVA
YIVENHIQAFRDITYVDTFAALAVRYEHQNQEKRRLDDSQDRDSGYAYGG
GGIIHDQPSSREKRDDRTMDSYEEAWFRSDDDDDELPELPTDQTIPPSTE
IADGATTKPLSAKLKDVELLDNKNSSETHNATNGPSSPVHNNNSPITDHI
NSQPNHNSDTEKSDSVFSTNNKTFNNKPLMNNRLIQNKFQIKINSTISSL
ANHADELKNGDTPKTTGDQPMEVDDASPTAKTKPLLGGLVDYPSDDDDED
EESRLQNNTPTATPPIENEVPISPAKKQRISSS Run BLAST on NCBI transcript from alignment at scaffold_92:131343..135510- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073459 ID=TCONS_00073459|Name=TCONS_00073459|organism=Clytia hemisphaerica|type=transcript|length=4168bp|location=Sequence derived from alignment at scaffold_92:131343..135510- (Clytia hemisphaerica)
AACTTGATTCCGCCATTCAAAAATGCAAAATCATAAAAGGGTTTTCATCG
TCCATAAGGGTGACACGCAACACGCAACCAAGAGTTCTAAACAATCTAAA
CAATCTTAATCTGTTTCTTTCATTGATTAAATCCAACTAACACTTTCCTC
CTTTTCAGCGGCGTTACGATTTTGTCGTCGCATCATCCAACACAAGGACG
ATATGTACAACAAATACATTATTGTCGGCCGACTCTTCAAACCCATTGTG
CAAGCTTTCCTTGTCAATGGACAACGATACAATCTTCTCAACTCCGCCAT
CTTAGAACTTTTCCAATTCATTTTAAATGTAAGTTTCGAGGTTTTCGACA
ATTTACAATCTGACTTTCGCTTCATAATGGTTTTTGCTCGATCTGATCAG
GAAGAAAAGCGCCTTACTCAAGTCCAAGACTGTTCTATAGGTTTTAAAAG
ATAATGTTTGTATCTTTTCAAAATAGTTGGGTTCGTGGTGTTTTATATCT
TTCTTTTGCATTACAGGAGGACATAAAAAGTCTGGTAGCCTACATAGTTG
AAAATCATATTCAAGCATTTCGAGATATCACGTATGTTGACACGTTCGCG
GCACTTGCTGTCCGCTATGAACATCAAAACCAAGAGAAACGAAGGCTGGA
TGATTCCCAAGACAGGTAAGGAATTGAGCTCCGTAAATGCTCACGGCTGA
CCATCGTGTTGCTCAAAGGAATTTTTTTTAATGTCTGGCTCAAAGCCGTT
TTCAATTCGGTGCGGATTCCGCTTGCAAAGCGTTTTCCGTTTTCAATGCA
TGGAGGTATTTTTCACACGGGAAATGCAAAATTAATGTAAATTTAGATTA
TCTCTTAAAAACGGCCTTCACTCTTTACTCTAATATATCTACATTTTGCA
AGTTTCTTTCTATTCTCCCCTCATCCAAATATATCACTACCGTAGCCGTA
TTACTGCGAATAAATGTTCCGGATTTTAGGAGGGCCGTTTATTGGAGAAG
GCGTTTAAAAGAAGGGGGCGTTTATTAAACTTTAATAAATTGAATGGGAA
CCTTATTTTTGGACCTACCCCGGTGGAGGTCCTATAAATTAACCTATGTT
TGTTCGTTCGTCCGTCCGTTCGTTCGTCTGTTACCAACTATTCTCAGGAT
TGAATCATAGGAATCTTTTGATTTTTGGTGTAAAGGTGCAAAATGGTGGT
GGCCAAAATGTGATTTTTGCATGAAAGTAGGTAAAAGATGGCTCAAGCAG
ATTTTTGTAAAAAAAGATTTTTTAGCTAAAAAACGCATCTTTATCTGTAT
AAGAATCACTATTAATAAGGATACATCAATGTTCTTAGCCAAATTACTTA
ATTTTTTGATGAGATAGATGTATTTCTTGCTCACGAAGTCTTGAATATGA
AAGAATATTTCAAGGGCATGAAATTTTGGTTTCTAAACGTTTTTTTTTAT
ANCCAAATTACTTAATTTTTTGATAAGATAGATGTATTTCTTGCTCACGA
AGTCTTGAATATGAAAGAATATTTCAAGGGCATGAAATTTTGGTTTCTAA
ACTTTTTTTTTTATAAGAAACAAACGACTAATTTTAATAGATCGTCACTA
CTTGTGTTGTGAATGATTGTTTAACGGTCATGCTCACGTAGATATAAATT
ATATGTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTATCACTTGTTC
CCTTTCGTTCTCTTTCAGTTATTATATGTCATTTTGGAAATGGGTAAAAA
TGGGTCAAAATTAGTTTCAATACAATGATCAACACATATGTATAAGTACG
GGGGAGGCGTTCATTCGAAGAGGGCGTTTATTGAAGAATTTTCCTTAAGG
GAGGGGCGTTTATTCGAAGTAATACGGTATTTTGTTGTGCATCTTCTAGA
GATTCTGGGTACGCTTACGGTGGCGGTGGTATTATTCACGATCAGCCTTC
ATCACGCGAGAAACGTGACGATCGAACGATGGACTCGTACGAAGAAGCTT
GGTTTCGTTCTGACGATGATGATGATGAACTACCAGAACTTCCGACCGAT
CAAACCATTCCCCCTTCTACTGAGATCGCCGATGGCGCCACCACCAAACC
GCTCAGTGCCAAACTCAAAGATGTCGAACTTTTAGATAACAAGAACTCTT
CTGAGACTCACAATGCTACAAATGGACCATCAAGTCCTGTACATAATAAT
AATTCCCCGATTACCGATCATATAAACAGCCAACCAAATCATAATTCCGA
TACGGAAAAATCGGATTCAGTATTTTCTACGAATAACAAGACATTTAATA
ATAAACCCTTGATGAATAATCGTTTGATTCAGAACAAGTTTCAGATCAAA
ATCAACTCCACTATATCTTCGTTGGCGAATCACGCGGACGAACTTAAGAA
TGGCGATACACCGAAAACGACCGGCGATCAGCCGATGGAGGTCGACGACG
CCTCGCCTACTGCTAAAACGAAACCGGTAGGGCTTTTTCTTTGTTGCTCA
TGACGTGTTTAAGCTAGATTTTACCTAAATCGACTTCACTTGGTAGTAAT
AAGAGATAGTGATCAGTGGATTTCTTCTATACCCCAGCGGTTTGCTTGAA
TGGGCTTTTTCACTTGCGTAAATGCGTGAAGATTTTAAAAAAGCTGCGTG
GATGTGTGAACTATAAAACTTTGCGTGAACAGTAATTACGTGAATTTCGA
AAAAAAGAGTGCGTGAATGCGTGAATTTCGAAATAAAATTGAGGGATTGC
GTGAATTAAAGGTCTGCTGGGGGGGGGGGGNAAACTTTATTTTCACCTTC
TTTTTAGTTGTTGGGAGGTCTGGTAGATTATCCCAGTGATGATGATGACG
AGGATGAAGAATCCCGCCTTCAAAACAACACGCCCACCGCTACCCCGCCC
ATCGAAAACGAAGTCCCTATTTCACCGGCAAAGAAGCAGCGTATAAGTTC
CAGTTGAATAGAGATCAGTGTTGTGGCCATTGGTTGAAAGGCATTTCTTT
CTCGAGCGATCGGTCGCTGGAATCGACGTAAAGTTCGCCTTAGTACGATA
GCTTTCTTCAGGTTAGAAAGCTCTGGACAATTCTTGTCCGTAGAAGGATC
CTTGATATTTGGGAAATTTTAAAAGAATGGAATTTTCTTGTGGATATAAC
TCTTTGACGAATGTTTTTTATTTGTGCTTCAAAAAACGAGAATTGATACC
CACCCGCGCTCGCCCGCTCAAACGCCGCCCGTCAGAAGGATGTACCCTTA
CTGCTGTCGAATGATTGATATAATGAAACGAAATGGAATTTTTGATATGA
TTTTGAAATTGGTGGCAAAAAATTGAACAATGTTTTTACGTTTTCTGTAA
AAAATGCGGAATGTTTTTAATCTCACGACTGTTTCTCCTGTTCTAATGAT
ACTCAAGGATATTTTATCTTGGTTTTAGCTCCCCTCAGTCCCGAAATTTA
GTTAGGGAACAACTGACCCTGATTTTTTATTCAATTTTTCATGTTTTCAA
AGTAGGTCAAGTGTGACAAAGTAGACTGGTTCCGTCATCCTGTATATCGA
CGAGATCACTCCCTATACCTGGCGCCGTCTTCTAGTAGAACTTCTTTTGT
TATTCTTTCTGGGGAGTGAATTGTCGGTTGGTATCCATGGTGATATACGT
TATCATACTTGATCTCTCTTTAATGATCGATCAGCCGAAAGACGTTTGCT
CTACTAAATGATCTACAGTAAACTCTCGGTTATTCTTACCCCATCTTAAA
AATTAGATTTGAGCGATCGACCAACTAATTCGACTAAATAACGTCCTCTA
TACATTCAAAAATTCGAAACAACTGTATGTTACATAGGGGATCTCTCGAT
CTCATGTTTTGGCTCTAATTTTAACGACTTTAAAAAGAAAAATGGGAAAA
GAACATTTTTTGACAAGATTGATTTGCCCAACGGAGTAAGTTTTCTAGAT
TTTCATATATGCTTCATTCTCGTCGACTTGGTCTCTTAGAGTTCTACCAA
AAAGCGCCATCAGTGTCTTTTCTGAAAGGTGAACCGTCTCCTCGGCTGTC
CATTGTTTTTATATCATGTTATTAGACAAATAGACAGACAGATGTAAATA
TGTAATGTTTTTACTTCTTTTTTCCACTGAAAACGTCAGATAATGCGAAA
AATACAATCGAAAAAAAG Coding sequence (CDS) from alignment at scaffold_92:131343..135510- >TCONS_00073459 ID=TCONS_00073459|Name=TCONS_00073459|organism=Clytia hemisphaerica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_92:131343..135510- (Clytia hemisphaerica)
ATGTACAACAAATACATTATTGTCGGCCGACTCTTCAAACCCATTGTGCA
AGCTTTCCTTGTCAATGGACAACGATACAATCTTCTCAACTCCGCCATCT
TAGAACTTTTCCAATTCATTTTAAATGAGGACATAAAAAGTCTGGTAGCC
TACATAGTTGAAAATCATATTCAAGCATTTCGAGATATCACGTATGTTGA
CACGTTCGCGGCACTTGCTGTCCGCTATGAACATCAAAACCAAGAGAAAC
GAAGGCTGGATGATTCCCAAGACAGAGATTCTGGGTACGCTTACGGTGGC
GGTGGTATTATTCACGATCAGCCTTCATCACGCGAGAAACGTGACGATCG
AACGATGGACTCGTACGAAGAAGCTTGGTTTCGTTCTGACGATGATGATG
ATGAACTACCAGAACTTCCGACCGATCAAACCATTCCCCCTTCTACTGAG
ATCGCCGATGGCGCCACCACCAAACCGCTCAGTGCCAAACTCAAAGATGT
CGAACTTTTAGATAACAAGAACTCTTCTGAGACTCACAATGCTACAAATG
GACCATCAAGTCCTGTACATAATAATAATTCCCCGATTACCGATCATATA
AACAGCCAACCAAATCATAATTCCGATACGGAAAAATCGGATTCAGTATT
TTCTACGAATAACAAGACATTTAATAATAAACCCTTGATGAATAATCGTT
TGATTCAGAACAAGTTTCAGATCAAAATCAACTCCACTATATCTTCGTTG
GCGAATCACGCGGACGAACTTAAGAATGGCGATACACCGAAAACGACCGG
CGATCAGCCGATGGAGGTCGACGACGCCTCGCCTACTGCTAAAACGAAAC
CGTTGTTGGGAGGTCTGGTAGATTATCCCAGTGATGATGATGACGAGGAT
GAAGAATCCCGCCTTCAAAACAACACGCCCACCGCTACCCCGCCCATCGA
AAACGAAGTCCCTATTTCACCGGCAAAGAAGCAGCGTATAAGTTCCAGTT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00073459-exon-scaffold_92-1575043694:135183..135510 | TCONS_00073459-exon-scaffold_92-1575043694:135183..135510 | Clytia hemisphaerica | exon |
| TCONS_00073459-exon-scaffold_92-1575043694:134846..134994 | TCONS_00073459-exon-scaffold_92-1575043694:134846..134994 | Clytia hemisphaerica | exon |
| TCONS_00073459-exon-scaffold_92-1575043694:133035..133611 | TCONS_00073459-exon-scaffold_92-1575043694:133035..133611 | Clytia hemisphaerica | exon |
| TCONS_00073459-exon-scaffold_92-1575043694:131343..132703 | TCONS_00073459-exon-scaffold_92-1575043694:131343..132703 | Clytia hemisphaerica | exon |
| TCONS_00073459-exon-scaffold_92-1510915933:135183..135510 | TCONS_00073459-exon-scaffold_92-1510915933:135183..135510 | Clytia hemisphaerica | exon |
| TCONS_00073459-exon-scaffold_92-1510915933:134846..134994 | TCONS_00073459-exon-scaffold_92-1510915933:134846..134994 | Clytia hemisphaerica | exon |
| TCONS_00073459-exon-scaffold_92-1510915933:133035..133611 | TCONS_00073459-exon-scaffold_92-1510915933:133035..133611 | Clytia hemisphaerica | exon |
| TCONS_00073459-exon-scaffold_92-1510915933:131343..132703 | TCONS_00073459-exon-scaffold_92-1510915933:131343..132703 | Clytia hemisphaerica | exon |
| TCONS_00073459-exon-scaffold_92-1491911889:135183..135510 | TCONS_00073459-exon-scaffold_92-1491911889:135183..135510 | Clytia hemisphaerica | exon |
| TCONS_00073459-exon-scaffold_92-1491911889:134846..134994 | TCONS_00073459-exon-scaffold_92-1491911889:134846..134994 | Clytia hemisphaerica | exon |
| TCONS_00073459-exon-scaffold_92-1491911889:133035..133611 | TCONS_00073459-exon-scaffold_92-1491911889:133035..133611 | Clytia hemisphaerica | exon |
| TCONS_00073459-exon-scaffold_92-1491911889:131343..132703 | TCONS_00073459-exon-scaffold_92-1491911889:131343..132703 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_92 | supercontig | scaffold_92:131343..135510 - |
Blast
BLAST of TCONS_00073459 vs. Swiss-Prot (Human)
Match: P4R3A (Serine/threonine-protein phosphatase 4 regulatory subunit 3A OS=Homo sapiens GN=PPP4R3A PE=1 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.296e-30 Identity = 67/142 (47.18%), Postives = 93/142 (65.49%), Query Frame = 2
Query: 158 AALRFCRRIIQHKDDMYNKYIIVGRLFKPIVQAFLVNGQRYNLLNSAILELFQFILNEDIKSLVAYIVENHIQAFRDITYVDTFAALAVRYEHQNQEKRRLDDSQDRDSGYAYGGGGIIHDQPSSREKRDDRTMDSYEEAWF 583
ALRF R+II KD+ YN+YI+ LF+P+V+AFL NG RYNL+NSAI+E+F+FI EDIKSL A+++EN+ +A D+ YV TF L +R+E Q R D+ DS + I+ + R +RD RT++ EE WF
Sbjct: 554 CALRFKRKIIGLKDEFYNRYIMKSFLFEPVVKAFLNNGSRYNLMNSAIIEMFEFIRVEDIKSLTAHVIENYWKALEDVDYVQTFKGLKLRFEQQ----RERQDNPKLDSMRS-----ILRNH---RYRRDARTLEDEEEMWF 683
The following BLAST results are available for this feature:
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