TCONS_00073470 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073470
Unique NameTCONS_00073470
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2504

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073470 ID=TCONS_00073470|Name=TCONS_00073470|organism=Clytia hemisphaerica|type=transcript|length=2504bp
ctAACAATCAACATGCGACATCACACTATTTCCCGCCATCTCCGCTGCTC
CATGCTCTCTGAAGGAGGTCAATCATTTTACCATTATTTTGCACCACCTC
TTCCAAAGAATGTTATCATGTTTGCAACAAACAACAATTCAATCCAAGAA
CAGTTTGAAGTGAGAGTTAGTATTGATCCCAGTGTAGAGGATAAGAAAAT
CGGCGAATTCTCAAGAGATAAAGATTGTTTTGTATGGAAAGTTGACTTGA
CAGAGGAAGAAGTGGATGCAacaaataaagttttaaaaatggATCGATTA
CTTAAAATTAGTGTGACCAAACAAGGAGCTGATGAAGGATTCTCTTCTCA
AGACAAAGATGAAGAAGATTTAGTTTTTGATAACGACAATGATGATATca
cagaatttgaaaaaagtttagaaaaattTGAAGACGACTTCAAGGAAAAC
CAATCAGCCATCAAAACACTTCATAAAAAGGTTGCTTCTCTACCAACCAA
ATCATCAACTAAAAAGAAAGTATCCGATTTCTTCAAACCtaaacaacaga
aaaaaaattctgatttcaaagctaaaacaataaCCAGTAAAGAAACTGTT
CTGACAGAAACTAAAGATAAAGTCAATGACTCTGATGGTGATAAAGAACA
AAAGGGAAAAAGACCACACCCATTTGTCGACTCCCCTGAATCTAAACCAA
AGAAAGCAATGATGCAAGCCAAACCTTCCAAAACACCAGAGATGGCTAAG
AGAAGAGTCATAAGGAAATCTGGGAAGTCACCAGCAGCTAAATTTTCTGA
TCTCATTTCTCATGAAAATCCTACAGGACGGTGGGGTCATGGATGCTGCA
AGATTTGTCATGATAAAGCAATAGTCATTGGTGGTCAAACCAAACAACAG
ATGAATACTGATTCTATGTGGCTTCTTGACTTGAAAACCCGAAAATGGGA
GTTACAAAAGTCCGATAATTCTACAATTGATCGTCGTGTCGGACATAGTG
TCGTATATGACGAAAAAAGAAACCTCGTTTTTGTTTATGGTGGATCAAAA
CCGAAGAAATGGTATAGTGATGTTTATTCACTGAATCTTGCCACTTTCGA
ATGGGAAAAATCAGAGACCATTGGTAAAGCCCCAACAAGAGCTTATCACT
CATGCAACAAATTTCACGACGAACTTTTTGTATTTGGGGGTGTTTACCCA
AACCCTGACCCTGACCCTGATGGTTGCAGCAATGAACTCGTCATTTATGA
TATTGCAAATAAAAGTTGGTACACACCTATCATTAGCGGTGATATTCCGA
ATCCTCGATCGGGTCATTCAGCAGTGATGATTGGTTCCAAATTGTACATT
TTCGGTGGCTGGGATGCGCCGACCTGTCATGATGATATCTATTGTCTCGA
TATAGTCATAATGAAGTATACGAGATTGAAACCTATTGGTGAAGGTCCGT
CTGCCCGTACTTGGCATTCCACCTCTGTTCTATCAAATCCAAATCAATTT
TGTATTTATGGTGGCTTCGATGGCAACGACAGTTTGAATGATCTTTTTGT
TTTCGATTCAGTCAAAACGTGTTGGAGCAAGATACATAACGAGCATAATT
CCATTTTACGTGCTGGTCATACATCACTGTTGATGACGTCACCATATAgt
gatgatgacgtcacaaaagcCAACAACAAAAGTCAGGTGTTAATTTTCGG
AGGCGGTGATAACGCCGGACAATTTTATAACGATGTCATTCTACTGGATG
TGAAATAGCAAAAGTGTCGTTTACTATATTTCgtgttttttaatattttt
tttttggtatttttatttaGTATGATTCTTATGTTTATCTCTTTTAGGCG
AGATTAGGTAAAGAATATTATCATTTAAGATTCTCCATATTTGTGGTAGT
GTATATAgaattaaagggacataaaagtactgacgaaattagtaaacaaa
ccatatgtggcgggatacaaaatcaaaacaaatgtcacatgtcaaaatca
aaaatcaaaaNNNNNNNNNNNNNNNNNNNaaaatcaaaacaaatgtcaca
tgtcaaaatcaaaaatcaaaacaaatatggctgattttgattgtttcaat
tgttttacaagtttgttttggacacgtgattttaattgttttctttaatg
acacgtggtttgtgcaatgtttacattttactacttttatgtccctttaa
gcagGCAGCAATTATGTGTGATTTCAGGAGTTCTATATGTGCTTTAACCT
CCTTTCAGAGAGATGAGTTAAATAccgaaattcatgattATCAAGAAATT
AATTCGTAAATGCATGCTCCTCCCATGCTCCTCTGATCTTACGCGAATTG
TATTCACGAATTTTGAATTGAATGAACATTACttgcaaatttcttttcat
atttTAATATATATTAAAACTTTAAATCCGAATGTGGTTTTAGAATGATC
CAAAATTACTTATACTTTGTATGACGTCCTGTTGTTATCTATTCATTATT
TAAT
Run BLAST on NCBI

protein sequence of TCONS_00073470-protein

>TCONS_00073470-protein ID=TCONS_00073470-protein|Name=TCONS_00073470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=585bp
LTINMRHHTISRHLRCSMLSEGGQSFYHYFAPPLPKNVIMFATNNNSIQE
QFEVRVSIDPSVEDKKIGEFSRDKDCFVWKVDLTEEEVDATNKVLKMDRL
LKISVTKQGADEGFSSQDKDEEDLVFDNDNDDITEFEKSLEKFEDDFKEN
QSAIKTLHKKVASLPTKSSTKKKVSDFFKPKQQKKNSDFKAKTITSKETV
LTETKDKVNDSDGDKEQKGKRPHPFVDSPESKPKKAMMQAKPSKTPEMAK
RRVIRKSGKSPAAKFSDLISHENPTGRWGHGCCKICHDKAIVIGGQTKQQ
MNTDSMWLLDLKTRKWELQKSDNSTIDRRVGHSVVYDEKRNLVFVYGGSK
PKKWYSDVYSLNLATFEWEKSETIGKAPTRAYHSCNKFHDELFVFGGVYP
NPDPDPDGCSNELVIYDIANKSWYTPIISGDIPNPRSGHSAVMIGSKLYI
FGGWDAPTCHDDIYCLDIVIMKYTRLKPIGEGPSARTWHSTSVLSNPNQF
CIYGGFDGNDSLNDLFVFDSVKTCWSKIHNEHNSILRAGHTSLLMTSPYS
DDDVTKANNKSQVLIFGGGDNAGQFYNDVILLDVK
Run BLAST on NCBI

transcript from alignment at scaffold_92:259747..270415-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073470 ID=TCONS_00073470|Name=TCONS_00073470|organism=Clytia hemisphaerica|type=transcript|length=10669bp|location=Sequence derived from alignment at scaffold_92:259747..270415- (Clytia hemisphaerica)
CTAACAATCAACATGCGACATCACACTATTTCCCGCCATCTCCGCTGCTC
CATGCTGTGGGTATCGTATATCGTCAACTTAGTATCAGGGGGGTCAGGGT
CAGAATTCAACGGAAATTTGGCCGTTGAAATAGTTGTCTGGCCGGCAGAA
ATGCTATCCCGCCGGCGGAAAATTGACAGTCAGAATAGTCATCCGGCCGG
CGGAATTAAATGATGGTAACATTTCTCGTCTCGTGGTAACTGTTTGCCCT
AAAACAATAGTTATTTCAGAGAACGTGACAGTCTTTTGAATAACTAATTA
CTCCAGCATAAATATTTTTAATGATAACGTCATGTAATTGATTTTTCTTT
TACAACACAGCTGTTACCTAGGGACAAGATAATTTAACCTTTTTATTGTG
CTGGCTTAGGAAAAGTATATACAGGAGTAAATTGTTATTCAATAGACCGC
CGCATTCTCCTAAACAACTATCATTATTGAATTCAGGATTTACTAAAATT
TATTTAAAATCATTGTTTTGCAGCTCTGAAGGAGGTCAATCATTTTACCA
TTATTTTGCACCACCTCTTCCAAAGAATGTTATCATGTTTGCAACAAACA
ACAATTCAATCCAAGAACAGTTTGAAGTGAGAGTTAGTATTGATCCCAGT
GTAGAGGATAAGAAAATCGGCGAATTCTCAAGAGATAAAGATTGTTTTGT
ATGGAAAGTTGACTTGACAGAGGAAGAAGTGGATGCAACAAATAAAGTTT
TAAAAATGGTATGGAAGGGTTTTTGTTCAAAGAAAGTCTTATAATTACTC
CCTCAAGCAGCTTTAGAAGTTTTATAAACAAAAAAGGAACCTTGTACATT
CACACAAAATTTTTACATACTGCTTTTTGTTAACCTGTTTTTGTTGGACT
GTAATAAGGGTTTTCAGAAAACCTGAACAAGGATCTATATTTCCTCCCAT
CTTAGCTTACAAAGTATAGTTACAATAAAAAGTTTGCAATTTCTTCCTTT
GATAACTTATTAACAATTTATTTTTTCTTAGGATCGATTACTTAAAATTA
GTGTGACCAAACAAGGAGCTGATGAAGGATTCTCTTCTCAAGACAAAGAT
GAAGAAGATTTAGTTTTTGATAACGACAATGATGATATCACAGAATTTGA
AAAAAGTTTAGAAAAATTTGAAGACGACTTCAAGGAAAACCAATCAGCCA
TCAAAACACTTCATAAAAAGGTTGCTTCTCTACCAACCAAATCATCAACT
AAAAAGAAAGTATCCGATTTCTTCAAACCTAAACAACAGAAAAAAAATTC
TGATTTCAAAGCTAAAACAATAACCAGTAAAGAAACTGTTCTGACAGAAA
CTAAAGATAAAGTCAATGACTCTGATGGTGATAAAGAACAAAAGGGAAAA
AGACCACACCCATTTGTCGAGTTAGTACACTCTATATTCTTTTATGTTTC
CATTAGACAACAGTCAGTTGACTTGGGTATCAATGAACTGAGAAGAGAGT
AGAGAACTCAATATTATCCAAAAGTTACTTTAGGCATACAAACTTTCGCG
GGCAGAAACTTTCGCGATGTCGAAAAATCGCGAAATGTTATTCGCGAGCA
TAAACTTTCGCAAATCGTTAGATAAAAATGAGAATTTTCGAATAAAAATT
GCCTTAAATTGAAAAATATTCATTAAATCCACTAAAGACGATTGCTCTTC
GATTTTAAAATGGCATTAAAGGATAATAATATGCCTAAAATTTGATTTCT
ATTACGATTTCGAGGTTTTTTGATTTTAAATTTTTTAAGAATATTTCGTG
AGCATAAACTTTCGCGAATTGCCCTGTTAATAATTTTCAAAGACATTTAC
TTTCGCGAAAAAGGCCAAAGTTCGCGAAATTCGCGAAAGTTTCTGCTTGC
GAAACTTTTTACGCCTAAAGTAATGGCGATCTTGACACTTGTCAACATCC
ATGAATTATACGTTGTTAATCACGCCTTAATTCATTCAGCTAAGTTTTTG
TCTCGACAGCTCAAATTTAAAAAGTGTAATTATTTCACTAAAGACTGGTC
TTAATGATGATTTGTTCTAGCTCCCCTGAATCTAAACCAAAGAAAGCAAT
GATGCAAGCCAAACCTTCCAAAACACCAGAGATGGCTAAGAGAAGAGTCA
TAAGGAAATCTGGGAAGTCACCAGCAGCTAAATTTTCTGATCTCATTTCT
CATGAAAGTAAGCATTTGAGAAATTGCAATTATTGTTTTTGTTAACTGGT
TGTTGTTTTTTTTATGCGGTCTGTACGAGATTTTTTTAAGCAATGGAATT
GGATCTTTTCGCACGAGGACAGGCTTACACAGCCTGTCTGACAAAAAATC
GACAGGAAAATGACACTTTCAAATTTCTGCTTGATTGATTTAAAGAAGTT
ATTACATGTGCGTCAAAAGAAGGTAAATTGCATTGTCTTTAAATTGTCGA
CTTTCTGTCGTCTTTTGTCTAAAATAAGGGAAGACTAAAAAATGCTTTCA
AAACTTTGTATTCAACCTTACAGATCCTACAGGACGGTGGGGTCATGGAT
GCTGCAAGATTTGTCATGATAAAGCAATAGTCATTGGTGGTCAAACCAAA
CAACAGATGAATACTGATTCTATGTGGCTTCTTGACTTGAGTAAGTAGCA
TGAAGCAATAATTCAAAATATTGTTGTGGATCAATAGATTATTGTATTTT
TTTGCTTGCCTTGATTCATCCCTGAGGTGATTTATTACCATGACAATTTC
GTTTCCTCTTCTAAATTCCCTCGATTAGATAAGGCTGTAACAATAACAAA
GGTGCTTGAATTTGACTGAAAAAAGCAATTATAAAAAATTAAAAGTTCTT
TTGGGGTTTTAATTATTTAAGTCAGGAGATAATATTATAAAGAAGTGGTA
TTTTATATTCATTATAGCCTTGTTTTTCACCGATAGACACATCAAAATCT
CTAAAAATCGAGTAGTCTTCTATTTAAAACCTTTTCAGAAACCCGAAAAT
GGGAGTTACAAAAGTCCGATAATTCTACAATTGATCGTCGTGTCGGACAT
AGTGTCGTATATGACGAAAAAAGAAACCTCGTTTTTGTTTATGGTGGATC
AAAACCGAAGAAATGGTATAGTGATGTTTATTCACTGAATCTTGCCACTT
TCGAATGGGAAAAATCAGAGGTATATCTCTTTTTGATTCGAATCTATTAT
CAGCTCTTAAAAGCAGAACAAATTAAGTATTGAATGGAGAGCTTCAGCTT
AGGAGCTGTTTTAAAAATGGAGGCAAGCTGGCCCAGGTGAGATGGGATGG
ATAGCTAAAAAAATCATATTGTATCATATTTCAATTTGATTTAGCATAAA
GACATAATCCTGAAAATTTGAAGTCATTTTGTTAAAAATAAATCAAAGGA
TATTTCACTTTCATTTTCGGTCAGAGTGTGCAAACAGTACTTTTAAAAAT
CGTTTTGTGTGAAAACAAAATAGTTTTTTATTTGAAATTTTCACAGGTTT
GCTTACGCACATTTCTACGTCACAAATATCAATTTCGTAATTTTTCTAGA
GATTTAATGTAGGTACTATTATATTTCTAGACCATTGGTAAAGCCCCAAC
AAGAGCTTATCACTCATGCAACAAATTTCACGACGAACTTTTTGTATTTG
GGGGTGTTTACCCAAACCCTGACCCTGACCCTGATGGTTGCAGCAATGAA
CTCGTCATTTATGATATTGGTATGTTTTTATATTTCATTAATACAAATTC
ATCATGTTTTCTGTTGTCATTCCCAAGGAAAATAAAAGATAAAAGAGGCT
CTTCTATTGAGCCAAGGGCGGGTATTTTAAGGTATCCTCAGAACATTTAT
ATCGTGTACATCCTTAAAGTTTTTCGAGATAATTCGCAGAATACGGGCAA
ATAAAAAAAACCGTGTGTCTGATTTTCAATCACTTCTTGTTTCTTACATT
TTCCTACGAAAATTCACAAACTATTTCCACAAAAATTTTCTTCTTGACAT
TTCAGCAAATAAAAGTTGGTACACACCTATCATTAGCGGTGATATTCCGA
ATCCTCGATCGGAGTAAGTTCCTCACTCTAGATTTGACAGCATCTCGTCG
ATCTTTTAATAACACTCCTGTACTGGTAAGAATGGAATTGTCTTTCATAT
GTGGGAATTCAGATTCTACCGTGGTTGATCTGGTATTTCGAGGTTTTTGG
TTATTTTGCTTTCGGCAGCCGCCTTTTTAAGAGGCGGCCGCCAGTTATAA
TCCGCGGCCGCCTTTTACAAAGAGCGGCCGCCTTTTATGATAAGCGGCCA
CCTTTTTCCTTCGAAAAAGGAGACCGCCCTTTATAACTGGCGCCCACTCT
TTATAACAGGCGGCCGCCCTTTAAAAACGCGGCCGCTATTTATAAAGGGC
GGCCACGTTTTTTAAAAGGCGGCCGCTTCTTTTACCGCCTTTTTCATAAT
CTGGTCTGTGAAATACAAGAGTCGTCAAAGTTAATCGCGTGGTAAGGATA
GGATTAGAGTGTAAATATATATACACAGTATAATATAATATACAATATAC
AGTACTGTACAGTACTGTAATCGAGATAATGTTTTTAGAGCCGAACATCA
ACTTGGGTGTGATTGACCTAGTCAAATCCTTCTCACCACACTCACCACAT
ACATAAAATCACATGGGTAGCTACCATGTTTGTTTATGTTTAGCCAATAC
ATTTCACAGACCAGATTATGAAAAACGCGGTAAAAAACGCGGCCACCTTT
TATAAAACGTGGCCGCCCTTTATAACTGACGGCCGTCCTTTATAAATAGC
GGCCGCGTTTTTAAAGGGCGGCCGCCTGTTATAAAGAGTGGCCGCCTTTT
TCGAAGGAAAAGGGTGGCCGCTTATTATAAAAGGCGGCCGCCAGTATTAT
AGGCGGTCGCTCTTTGTAAAAGGCGGCCGCGGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTCGAAATACCAGATCAGCCACGGTAAGATTCTATTGCTT
ACCCAAAAGATTCAGTTGGGATTCTCAAAGCTTTAGGGTCAGTGAAGAGT
AGCTTTCTAATGAAAGAGGGAGATGGAATTTCAGGGTGTTTCTTAACGCC
TGGGATTATTTCTTGAACTGTCCTGAACAGTAATTTTTCCGATAGGTAAA
TGTAAATGGTTCTGTGACATAGGGGTGTTGAATATTTTGGAGAATTATTT
GCTGAATCTAAAAATGCTTTTTGGCATTAGCTGCTTTTCAGTCGTTTATT
CATCTATCCAACGATGTAAAAATAATAGANATTGAGCCAAGGGCGGGTAT
TTTAAGGTATCCTCAGAACATTTATATCGTGTACATCCTTAAAGTTTTTC
GAGATAATTCGCAGAATACGGACAAATAAAAAAAACCGTGTGTCTGATTT
TCAATCACTTCTTGTTTCTTACATTTTCCTCCGAAAATTCACAAACTATT
TTCCACAAAAATTTTCTTCTTGACATTTCAGCAAATAAAAGTTGGTACAC
ACCTATCATTAGCGGTGATATTCCGAATCCTCGATCGGGGTAAGTTCCTC
ACTCTAGATTTGACAACATCTCGTCGATCTTTTAATAACACTCCTGTACT
GGTAAGAATGGAATTGTCTTTCATATGTGGGAATTCAGATTCTACCGTGG
CTGATCTGGTATTTCGAGGTTTTTGGTTATTTTGCTTTCGGCAGCCGCCT
TTTTAAGAGGCGACCGCCAGTTTTAATCCGCGGCCGCCTTTTACAAAGAG
CGGCTGCCTATAATACTGGCGGCCGCCTTTTATGATAAGCGGCCACCTTT
TTCCTTCGAAGAAGGAGGCCGCCCTTTATTACGATGGCCCCTAAGGCTCA
CCACGCACTTCCAGTTCTTATAAAATTTGTGAACTAGAACTGTCTAGGGT
CATGGCCCAGAAGGCTCACAAGACACTGCGCACTTCCGAGTTTTTTTGTG
ACGACATTGCACACTTCTAAAAATATTTTAGAAACGTAAAAGTCCCCCTC
GAAAGATAGCCGTTCTGGTCAGCAAAATAGATACCGAGTTGTAATAAGTG
AGTTGATGATAATAGCGAAGAGGCTCGGAAATCCCGAGTTATTTTCTTGA
GTTCAAAAGCCGAGTTAGTTACGAAAAACCGAGTTATGACGTTATTTTTC
GGAAATTTCGACGTCATTTTGTACCTTCTATATGACGTCATTCTCAATTC
TGTAGCTCGTTTTTTTTCCTTGCCTTTAAAATTTCGAGTTATCTCTGATG
GTATCTAAACTCAAGTAAGTCCTGCCTTTAAATTTTCGAGTCATTTCTCG
TTTTTTAACTCGGTTTTGTTTCTTTTAAATTTTCGAGTTATTTTCCTTCC
TGTACATTCTCGGATTCTCGAATTATTTTCACAGCAGAAGGCTCAAAACA
CACACACACACACACACTTCTAGTTTTCATGCACTTAGGGTGGTCCTATG
GCGGAAAATACCAGCGGCGTGGAGGCAAAAAAACAAAGTTGATATTTGCT
CACTTTTTGCTTCCCAGATTTTTGCCACTGGGGGGAATTTTGCAGACCAG
GACTTAACTCAGAAATTTTAACCTGTAACTCTTGATATGAGCAACTCGGA
AATTTTAACTCATTTTGCGTAACTCGACATTCATTTTATAGACCAAAAAA
AAAATTGATCGCGCGGGCCGCTCGCTTGGAAATTTCCCGCCCTGACAAAA
AGTCAGAAGTGCGCAGTGTCACTTGAGCCTTCTGGGCCATTGACCATAGG
CAGTTCTAGTTCACAAATTTTATAAGAACTGGAAGTGCGTAAAAACTAGA
AGTGCGTGTTTTGAGCCTTCTGGGCCATCGTACTAACGGATATAAGGTTG
GTTCTTTCCGGACATCTCAGCAAACCTTTGATAGCTGGTTTGCTATGAAG
CCGCTGATATCGTTGTGCCTCATTGATACGAAACCACCTTTTTTGCACGT
CAGGGCATATTCGAGCGAGAACGGAGTTCCACATTTGCAATGGGAAGGTG
TACGCTGTGTAATGCCCACCCGTAACGGATTCTGATTAGGTCAACGAAAC
ATTGCTTGTTGAGAATGTATCCTTCGTTTTGAACAGGCAAAGTCGTGAGC
CATGCTTAGGCTCTGTGTTGTCGATTGAGCTCCATCAGCTGGACTTGATT
TCTTTGGAGAGTCAGGTCGTTGTGAGGTGAAGAACGATGTTGCTATTTCG
TTCCCTCTTTTCATTCTTGATTTTCTTTGTAGGCAGGCGAGGATCAAGTT
TATATGCATATTCTTGGCTTACGATTGTCTCGGATAGATTGGATGTGATG
AGTAGTAGTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGATGTCAAAAAGTGTGTCAAAATCTAGCTAAAAGCATA
ACACGCACTGCACACAGAGCTTTTTAATAGAGTGCTCATTTCAATAGGAA
AACAATGGTTGTTCTCTTGAGAGAAGTGCCTTCTAGAGGTAGTTGGTTAT
CTATTATTTTTACATCGTTGATCTATCTTTGTAGTCATTCAGCAGTGATG
ATTGGTTCCAAATTGTACATTTTCGGTGGCTGGGATGCGCCGACCTGTCA
TGATGATATCTATTGTCTCGATATAGGTAAATTACAACATTTGTATATCC
TTTCAACTCGTATCATTGTTTTCCTTCGGAGACAAATTTCCATTCATTTT
CACCGCCTATGGAATAACAATAGGATCCCAAAAGAAAATCATCTCAACTG
AAAAGACAACTAAAAAAACTTGTCTTTTAAACTTGTTGGCTATCGAAAAA
GATCTTCAATTCATTATATGCACCACTGCAATGACTTCACGAAATTATGC
AACTTTTCTGTTTTTGTTCCACCCAATACGTCACTTTTTCTATTCTTAAA
GTGACATATTGGATGGAAAATCTTAAAAGTTCTCAGAAGACTCTTCAGTG
GTGCAAATCATGAATATTTTAATAGAGTAGATATTCAATACTTTTATGCA
ATAAGTTCCATATTTTAATGCAAGATCATTTTAAAGCCAAGTATTTCTTC
CCAGCGACGACTTTACTAAACAACCACTTTAGTTTGGTCAAATTTAATCG
TTTTAACTTTAACTTTCTCTTCATAGTCATAATGAAGTATACGAGATTGA
AACCTATTGGTGAAGGTCCGTCTGCCCGTACTTGGCATTCCACCTCTGTT
CTATCAAATCCAAATCAATTTTGTATTTATGGTGGCTTCGATGGCAACGA
CAGTTTGAATGATCTTTTTGTTTTCGATTCAGGTAAACCGTGCCAAAAAA
AGGCTAGGAAATTGAGCTTTTTTTTGACAGGAACTCGTCTTTTTTTACAA
GGGAAAACACGTACTCAGGACTCGGGGTTCTGAGGCTGTTTGACTTTAGT
CTTCTTTACCTGACTATACCAAATTTATTTTGTGTTATTAATTTCGCATT
GCGAAAGTATTACGATAGCCTTTCGCGGCGGCGGTGTCCTCGGAAAAAAA
ATTAGAAAACGAAAGTGCTTGATACGGTGGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTGTTTTGTTTTGAGATTACTTCTTTTCTTCTGTTTTAGTCAAAACGTGT
TGGAGCAAGATACATAACGAGCATAATTCCATTTTACGTGCTGGTCATAC
ATCACTGTTGATGACGTCACCATATAGTGATGATGACGTCACAAAAGCCA
ACAACAAAAGTCAGGTGTTAATTTTCGGAGGCGGTGATAACGCCGGACAA
TTTTATAACGATGTCATTCTACTGGATGTGAAATAGCAAAAGTGTCGTTT
ACTATATTTCGTGTTTTTTAATATTTTTTTTTTGGTATTTTTATTTAGTA
TGATTCTTATGTTTATCTCTTTTAGGCGAGATTAGGTAAAGAATATTATC
ATTTAAGATTCTCCATATTTGTGGTAGTGTATATAGAATTAAAGGGACAT
AAAAGTACTGACGAAATTAGTAAACAAACCATATGTGGCGGGATACAAAA
TCAAAACAAATGTCACATGTCAAAATCAAAAATCAAAANNNNNNNNNNNN
NNNNNNNAAAATCAAAACAAATGTCACATGTCAAAATCAAAAATCAAAAC
AAATATGGCTGATTTTGATTGTTTCAATTGTTTTACAAGTTTGTTTTGGA
CACGTGATTTTAATTGTTTTCTTTAATGACACGTGGTTTGTGCAATGTTT
ACATTTTACTACTTTTATGTCCCTTTAAGCAGGCAGCAATTATGTGTGAT
TTCAGGAGTTCTATATGTGCTTTAACCTCCTTTCAGAGAGATGAGTTAAA
TACCGAAATTCATGATATTCATGACGTAATGTTTTCTACGGAAAGACCCC
GGTTTTTGCCAGTAGTGGCACTTTTTTACACCTTTTGTCTAGTTTATAAG
TGCCACTACTGGCTAAAACCGAGGTATTTCCGTAGAAAACATTACGTCAT
GACTATCAAGAAATTAATTCGTAAATGCATGCTCCTCCCATGCTCCTCTG
ATCTTACGCGAATTGTATTCACGAATTTTGAATTGAATGAACATTACTTG
CAAATTTCTTTTCATATTTTAATATATATTAAAACTTTAAATCCGAATGT
GGTTTTAGAATGATCCAAAATTACTTATACTTTGTATGACGTCCTGTTGT
TATCTATTCATTATTTAAT

Coding sequence (CDS) from alignment at scaffold_92:259747..270415-

>TCONS_00073470 ID=TCONS_00073470|Name=TCONS_00073470|organism=Clytia hemisphaerica|type=CDS|length=1758bp|location=Sequence derived from alignment at scaffold_92:259747..270415- (Clytia hemisphaerica)
CTAACAATCAACATGCGACATCACACTATTTCCCGCCATCTCCGCTGCTC
CATGCTCTCTGAAGGAGGTCAATCATTTTACCATTATTTTGCACCACCTC
TTCCAAAGAATGTTATCATGTTTGCAACAAACAACAATTCAATCCAAGAA
CAGTTTGAAGTGAGAGTTAGTATTGATCCCAGTGTAGAGGATAAGAAAAT
CGGCGAATTCTCAAGAGATAAAGATTGTTTTGTATGGAAAGTTGACTTGA
CAGAGGAAGAAGTGGATGCAACAAATAAAGTTTTAAAAATGGATCGATTA
CTTAAAATTAGTGTGACCAAACAAGGAGCTGATGAAGGATTCTCTTCTCA
AGACAAAGATGAAGAAGATTTAGTTTTTGATAACGACAATGATGATATCA
CAGAATTTGAAAAAAGTTTAGAAAAATTTGAAGACGACTTCAAGGAAAAC
CAATCAGCCATCAAAACACTTCATAAAAAGGTTGCTTCTCTACCAACCAA
ATCATCAACTAAAAAGAAAGTATCCGATTTCTTCAAACCTAAACAACAGA
AAAAAAATTCTGATTTCAAAGCTAAAACAATAACCAGTAAAGAAACTGTT
CTGACAGAAACTAAAGATAAAGTCAATGACTCTGATGGTGATAAAGAACA
AAAGGGAAAAAGACCACACCCATTTGTCGACTCCCCTGAATCTAAACCAA
AGAAAGCAATGATGCAAGCCAAACCTTCCAAAACACCAGAGATGGCTAAG
AGAAGAGTCATAAGGAAATCTGGGAAGTCACCAGCAGCTAAATTTTCTGA
TCTCATTTCTCATGAAAATCCTACAGGACGGTGGGGTCATGGATGCTGCA
AGATTTGTCATGATAAAGCAATAGTCATTGGTGGTCAAACCAAACAACAG
ATGAATACTGATTCTATGTGGCTTCTTGACTTGAAAACCCGAAAATGGGA
GTTACAAAAGTCCGATAATTCTACAATTGATCGTCGTGTCGGACATAGTG
TCGTATATGACGAAAAAAGAAACCTCGTTTTTGTTTATGGTGGATCAAAA
CCGAAGAAATGGTATAGTGATGTTTATTCACTGAATCTTGCCACTTTCGA
ATGGGAAAAATCAGAGACCATTGGTAAAGCCCCAACAAGAGCTTATCACT
CATGCAACAAATTTCACGACGAACTTTTTGTATTTGGGGGTGTTTACCCA
AACCCTGACCCTGACCCTGATGGTTGCAGCAATGAACTCGTCATTTATGA
TATTGCAAATAAAAGTTGGTACACACCTATCATTAGCGGTGATATTCCGA
ATCCTCGATCGGGTCATTCAGCAGTGATGATTGGTTCCAAATTGTACATT
TTCGGTGGCTGGGATGCGCCGACCTGTCATGATGATATCTATTGTCTCGA
TATAGTCATAATGAAGTATACGAGATTGAAACCTATTGGTGAAGGTCCGT
CTGCCCGTACTTGGCATTCCACCTCTGTTCTATCAAATCCAAATCAATTT
TGTATTTATGGTGGCTTCGATGGCAACGACAGTTTGAATGATCTTTTTGT
TTTCGATTCAGTCAAAACGTGTTGGAGCAAGATACATAACGAGCATAATT
CCATTTTACGTGCTGGTCATACATCACTGTTGATGACGTCACCATATAGT
GATGATGACGTCACAAAAGCCAACAACAAAAGTCAGGTGTTAATTTTCGG
AGGCGGTGATAACGCCGGACAATTTTATAACGATGTCATTCTACTGGATG
TGAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045598XLOC_045598Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073470-exon-scaffold_92-1575043694:270360..270415TCONS_00073470-exon-scaffold_92-1575043694:270360..270415Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1575043694:269658..269892TCONS_00073470-exon-scaffold_92-1575043694:269658..269892Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1575043694:268996..269384TCONS_00073470-exon-scaffold_92-1575043694:268996..269384Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1575043694:268209..268345TCONS_00073470-exon-scaffold_92-1575043694:268209..268345Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1575043694:267776..267892TCONS_00073470-exon-scaffold_92-1575043694:267776..267892Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1575043694:267246..267427TCONS_00073470-exon-scaffold_92-1575043694:267246..267427Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1575043694:266697..266835TCONS_00073470-exon-scaffold_92-1575043694:266697..266835Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1575043694:264727..264784TCONS_00073470-exon-scaffold_92-1575043694:264727..264784Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1575043694:261840..261931TCONS_00073470-exon-scaffold_92-1575043694:261840..261931Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1575043694:261184..261339TCONS_00073470-exon-scaffold_92-1575043694:261184..261339Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1575043694:260100..260826TCONS_00073470-exon-scaffold_92-1575043694:260100..260826Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1575043694:259747..259962TCONS_00073470-exon-scaffold_92-1575043694:259747..259962Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1510915933:270360..270415TCONS_00073470-exon-scaffold_92-1510915933:270360..270415Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1510915933:269658..269892TCONS_00073470-exon-scaffold_92-1510915933:269658..269892Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1510915933:268996..269384TCONS_00073470-exon-scaffold_92-1510915933:268996..269384Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1510915933:268209..268345TCONS_00073470-exon-scaffold_92-1510915933:268209..268345Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1510915933:267776..267892TCONS_00073470-exon-scaffold_92-1510915933:267776..267892Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1510915933:267246..267427TCONS_00073470-exon-scaffold_92-1510915933:267246..267427Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1510915933:266697..266835TCONS_00073470-exon-scaffold_92-1510915933:266697..266835Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1510915933:264727..264784TCONS_00073470-exon-scaffold_92-1510915933:264727..264784Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1510915933:261840..261931TCONS_00073470-exon-scaffold_92-1510915933:261840..261931Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1510915933:261184..261339TCONS_00073470-exon-scaffold_92-1510915933:261184..261339Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1510915933:260100..260826TCONS_00073470-exon-scaffold_92-1510915933:260100..260826Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1510915933:259747..259962TCONS_00073470-exon-scaffold_92-1510915933:259747..259962Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1491911889:270360..270415TCONS_00073470-exon-scaffold_92-1491911889:270360..270415Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1491911889:269658..269892TCONS_00073470-exon-scaffold_92-1491911889:269658..269892Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1491911889:268996..269384TCONS_00073470-exon-scaffold_92-1491911889:268996..269384Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1491911889:268209..268345TCONS_00073470-exon-scaffold_92-1491911889:268209..268345Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1491911889:267776..267892TCONS_00073470-exon-scaffold_92-1491911889:267776..267892Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1491911889:267246..267427TCONS_00073470-exon-scaffold_92-1491911889:267246..267427Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1491911889:266697..266835TCONS_00073470-exon-scaffold_92-1491911889:266697..266835Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1491911889:264727..264784TCONS_00073470-exon-scaffold_92-1491911889:264727..264784Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1491911889:261840..261931TCONS_00073470-exon-scaffold_92-1491911889:261840..261931Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1491911889:261184..261339TCONS_00073470-exon-scaffold_92-1491911889:261184..261339Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1491911889:260100..260826TCONS_00073470-exon-scaffold_92-1491911889:260100..260826Clytia hemisphaericaexon
TCONS_00073470-exon-scaffold_92-1491911889:259747..259962TCONS_00073470-exon-scaffold_92-1491911889:259747..259962Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073470-proteinTCONS_00073470-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_92supercontigscaffold_92:259747..270415 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.6081	20.7725	9.74202	7.8129	4.05927	3.97227	3.77723	3.96574	4.8307	4.99985	1.98373	3.40548	2.19078	1.93909	4.14095	4.52285	6.57674	5.73386	0.279781	0.829837	4.49551	3.73821	19.8859	17.025	3.502	3.35019	1.42088	1.40636	9.6037	10.2638
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015915Kelch-typ_b-propeller
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00073470 vs. Swiss-Prot (Human)
Match: RABEK (Rab9 effector protein with kelch motifs OS=Homo sapiens GN=RABEPK PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.472e-25
Identity = 91/386 (23.58%), Postives = 162/386 (41.97%), Query Frame = 1 
Query:  703 KAMMQAKPSKTPEMAKRRVIRKSGKSPAAKFSDLISHENPTGRWGHGCCKICHDKAIVIGGQTKQQMNTDSMWLLDLKTRKWELQKSDNSTIDRRVGHSVVYDEKRNLVFVYGGSKPKKWYSDVYSLNLATFEWEKSETIGKAPT-RAYH-SCNKFHDELFVFGGVYPNPDPDPDGCSNELVIYDIANKSWYTPIISGDIPNPRSGHSAVMIGSKLYIFGGWDAPTCHDDIYCLDIVIMKYTRLKPIGEGPSARTWHSTSVLSNPNQFCIYGGFDGNDSLNDLFVFDSVKTCWSKIHNEHNSILRAG---HTSLLMTSPYS------DDDVTKANNKSQ-------------------------VLIFGGGDNAGQFYNDVILLDV 1752
            K +   +P   P  A    +   G SP A+     S+  P G    G       K  ++GG    +  +D +  +DL   +W+L       + R    S +     + ++V+GG+      + +  LN  T  W   E     P+ R +H S     ++L+VFGG      P  D    +L ++D    +W  P   G+ P+PR GH  V  G+KL+I GG      +DD++C+DI  MK+ +L P G  P+    HS   +       I+GG     +L+ ++ + + +  W+ +  + +++L  G   H+  ++  P +      D +    N++++                          L+FGG +  G+ Y+D I+  V
Sbjct:    2 KQLPVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKRG-------KVFIVGGANPNRSFSD-VHTMDLGKHQWDLDTC-KGLLPRYEHASFIPSCTPDRIWVFGGANQSGNRNCLQVLNPETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQD---TKLHVFDANTLTWSQPETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMG--KHVYIFGGMTPAGALDTMYQYHTEEQHWTLL--KFDTLLPPGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKEDSADKVMSHSGDSHEESQTATLLCLVFGGMNTEGEIYDDCIVTVV 371
The following BLAST results are available for this feature:
BLAST of TCONS_00073470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RABEK2.472e-2523.58Rab9 effector protein with kelch motifs OS=Homo sa... [more]
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