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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073495 ID=TCONS_00073495|Name=TCONS_00073495|organism=Clytia hemisphaerica|type=transcript|length=3172bpRun BLAST on NCBI protein sequence of TCONS_00073495-protein >TCONS_00073495-protein ID=TCONS_00073495-protein|Name=TCONS_00073495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp KNFNLESPSKVCRNSRQKKVNLHARMAEEINFAGESAHWCLNANKGYYRFRun BLAST on NCBI transcript from alignment at scaffold_93:193950..206905+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073495 ID=TCONS_00073495|Name=TCONS_00073495|organism=Clytia hemisphaerica|type=transcript|length=12956bp|location=Sequence derived from alignment at scaffold_93:193950..206905+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_93:193950..206905+ >TCONS_00073495 ID=TCONS_00073495|Name=TCONS_00073495|organism=Clytia hemisphaerica|type=CDS|length=1533bp|location=Sequence derived from alignment at scaffold_93:193950..206905+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073495 vs. Swiss-Prot (Human)
Match: MFSD1 (Major facilitator superfamily domain-containing protein 1 OS=Homo sapiens GN=MFSD1 PE=2 SV=2) HSP 1 Score: 202.601 bits (514), Expect = 8.558e-56 Identity = 137/392 (34.95%), Postives = 199/392 (50.77%), Query Frame = 2
Query: 170 CLLTFGSYFCFDMPSVLQDSFTGTYGINCTTNSHNVTKCEEHLGMTETEYNLLYTVYAWMNALVVIGSGIFIDKV-GQRVGAVFFSALCVVGSAIFASGYFLKGRGSMLVLFLTGRLLFGAGNGSLTIAQNRISAYWFEGKELAFAFGATLSFSRLGSILNF----FLTKDFSQTYG------LKWTLWGGVFLCILGFGGALVLYVLDKNGMEQIAQREPGAKKSRKMKVGDIRHLSLQFVLLAVTTMSFYNTVFPFVADASQFIREKYHYSDDSEMPSYYAGSVYDVSLVATPILGIIVDYLGYRGLLAFVCAIF-TIPVYLILAFTTWHPLYGTVLLGLTYSAAATSLWPSAPLVVNPGVLGTALGLMTSLQMIGIGVCSLVVGAILDK 1309
C L FGSYFC+D P+ LQ T+ + + + T++ LLY Y+W N ++ G ID+V G R G + FS +G +FA G G + L GR +FG G SL +AQN + WF+GKEL FG LS +R+GS +N +L G L TL G CIL AL L LD+ E+I +E G K +K+ D++ SL L+ + + +Y VFPF+ F EK+ +S S+ S VY +S +P+ G++VD G + ++ +CA+ T+ +++LAFT W+P LLGL+YS A +LWP VV LGTA G M S+Q +G+ + S++ G ILD
Sbjct: 50 CFLGFGSYFCYDNPAALQ------------------TQVKRDMQVNTTKFMLLYAWYSWPNVVLCFFGGFLIDRVFGIRWGTIIFSCFVCIGQVVFALG----GIFNAFWLMEFGRFVFGIGGESLAVAQNTYAVSWFKGKELNLVFGLQLSMARIGSTVNMNLMGWLYSKIEALLGSAGHTTLGITLMIGGITCILSLICALALAYLDQRA-ERILHKEQG-KTGEVIKLTDVKDFSLPLWLIFIICVCYYVAVFPFIGLGKVFFTEKFGFS--SQAASAINSVVYVISAPMSPVFGLLVDKTG-KNIIWVLCAVAATLVSHMMLAFTMWNPWIAMCLLGLSYSLLACALWPMVAFVVPEHQLGTAYGFMQSIQNLGLAIISIIAGMILDS 414 The following BLAST results are available for this feature:
BLAST of TCONS_00073495 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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