TCONS_00073537 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073537
Unique NameTCONS_00073537
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1992

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073537 ID=TCONS_00073537|Name=TCONS_00073537|organism=Clytia hemisphaerica|type=transcript|length=1992bp
tttgaaaaagaaaatgtgtgTTGATTTGttgtgtgttaaaaatttttctt
ttgagttGATTTGGAGTTTTGATCGAAAACATGAAATATGGAATCGAACG
AAGAAGCAGATACTCCAAAGAAATATAGTAGATCGCTATCTCCAAGTGCT
TTTAACATTTGTATTTTATGTACAGAAGAGATTCCTTCAAATCGACGCCA
TCGCCTGTTCGatgataaaaatgttaaaacagACGCTTGCAATAAATTGG
AGCAGTGTGTATGTATCCAAATCCAACAATCAACAGACTTCCGAATCATA
TGTGAAAATTGTCTGAGGTCTGTCTCAAATATCACTAAAAAGCAAAACCT
AAAAATCGAAGTGTTCCAGGATGGCAGGAAACATGGTGAAcaaaaattta
taagaactaagaTAAAGAGACTGTCAAAAGGAAACAAAGAACCAAACAGC
AGAAAGAAATTGTCAAGTCAATTCGATGGTTTGAAACTTGGAGCTAAAAA
TTCCACTATGAAAatGACGGTTACAGACGAAAAAGGCTCTACTGAAGCAG
AAATTCACATTCCAAAGCAGCAAcaaaaattgatcaaacttgCCATGGCT
AACAATAAAAAACACCTGTTGAATTATATCCTGACCAGTATAAAACCCGA
AGACTGTGAAATTGAGAATATTGTCATGAAATTCGTCCAGAAAAATATCA
AACGTGAGATTAAACAGATTTGCTCAAATAATAACAAAACAACGACGTTT
CGTTGCCATGATGTATCACAACTCACAGAACTGTCGTATGATGCTCAGTA
TCAAGAACTTCAATCGGTTGCACCTTATACATTTAAATCAATTGTTAGTA
TGGCAAAGAATCCACGTGAAAACAGAAATAAACACAAGAAACTGGAAACA
TCTATACCGGCCGTCATGAATGCTGTTAATTCGCTACTGATGTGCAGAAA
TCGAATGCTAAACCGTTGCGCCGTTATGAATAGCATTATTCTTAAGAAGG
GAAAGGCTGACAAACAATGCTTCAATAGATTTAACGCACTGCAGACATGC
GTATCATACAAAGAAACACTATCAAAACAAACAGAGTTGGGCAAGGGTCA
TAGAAATACAATCAAGGAATGGGGAAGGGACATAGTCAAATACAGGCAGG
CAACGAAGGAAGCAGCCAAAGCTCAAATGATGGATGAAGAAAAAGAGTTG
GTTCTAACAAAAGGCGACTGTCCAGTCAATTTGTTCAATGTGGAAAGTAG
TTTCCTAGATAAAGCAGCTATCATGAAACCAAAATTTCGTCTACTTGAGG
ATACAATCGAGGAAGAAATGGAAGTATTTGATACAGAAGAGTCTGACCGA
GCAATAGCAGATTTGCTGGATGAAGAGGTGCCAGTTCTCCCAGTCGATGT
TTCAACACCTGATACTTCATTCGACTTCGATTTCCAGCTTCAACGAGTCG
TCACATCGACACCACCATCAAAACAATCCAAATCTATCATGAACGTCATC
CAATCGTCCACTCAGCAACCTAACTTCAATTACAGTCCTTCTTCGTATGA
CGTCGTCCAATCGTTCACTCAGGAACCTAACGTCAATCACAGTCCCTCGT
CTGACTGCATCCAATCGTTCACTCAGGAACCTAACGTAAATCACAGTCCT
TCTTCGTCTGACGTCATCCAATCGTCCACTCAGCAACCTAACGTCAATTA
CAGTCCTTCTTCGTATGACGTCATCCAATCGTTCACTCAGGAACCTAACG
TCAATCACAGTCCTTCGTCTGACGTCATCCAATCGTTCACTCAGCAACCT
AACGTCAATCACATTTCTTCGCCTGGCGTCATCCAATCGTCCACTCAGGA
ACCTAACGTCAATCACAGTCCTTCGTCTGATGTCATCCAATCGTTCACGC
ATGAACCTAACGTCAATAACAGTCCTTCTTCGTCTGACGTCATCCAATCG
TTCACTCAGCAACCTAACGTCAATCACAGTCCTTCGTCTGAT
Run BLAST on NCBI

protein sequence of TCONS_00073537-protein

>TCONS_00073537-protein ID=TCONS_00073537-protein|Name=TCONS_00073537-protein|organism=Clytia hemisphaerica|type=polypeptide|length=635bp
MESNEEADTPKKYSRSLSPSAFNICILCTEEIPSNRRHRLFDDKNVKTDA
CNKLEQCVCIQIQQSTDFRIICENCLRSVSNITKKQNLKIEVFQDGRKHG
EQKFIRTKIKRLSKGNKEPNSRKKLSSQFDGLKLGAKNSTMKMTVTDEKG
STEAEIHIPKQQQKLIKLAMANNKKHLLNYILTSIKPEDCEIENIVMKFV
QKNIKREIKQICSNNNKTTTFRCHDVSQLTELSYDAQYQELQSVAPYTFK
SIVSMAKNPRENRNKHKKLETSIPAVMNAVNSLLMCRNRMLNRCAVMNSI
ILKKGKADKQCFNRFNALQTCVSYKETLSKQTELGKGHRNTIKEWGRDIV
KYRQATKEAAKAQMMDEEKELVLTKGDCPVNLFNVESSFLDKAAIMKPKF
RLLEDTIEEEMEVFDTEESDRAIADLLDEEVPVLPVDVSTPDTSFDFDFQ
LQRVVTSTPPSKQSKSIMNVIQSSTQQPNFNYSPSSYDVVQSFTQEPNVN
HSPSSDCIQSFTQEPNVNHSPSSSDVIQSSTQQPNVNYSPSSYDVIQSFT
QEPNVNHSPSSDVIQSFTQQPNVNHISSPGVIQSSTQEPNVNHSPSSDVI
QSFTHEPNVNNSPSSSDVIQSFTQQPNVNHSPSSD
Run BLAST on NCBI

transcript from alignment at scaffold_94:19064..22971-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073537 ID=TCONS_00073537|Name=TCONS_00073537|organism=Clytia hemisphaerica|type=transcript|length=3908bp|location=Sequence derived from alignment at scaffold_94:19064..22971- (Clytia hemisphaerica)
TTTGAAAAAGAAAATGTGTGTTGATTTGTTGTGTGTTAAAAATTTTTCTT
TTGAGTTGATTTGGAGTTTTGATCGAAAACATGAAATATGGAATCGAACG
AAGAAGCAGATACTCCAAAGAAATATAGTAGATCGCTATCTCCAAGTGCT
TTTAACATTTGTATTTTATGTACAGAAGAGATTCCTTCAAATCGACGCCA
TCGCCTGTTCGATGATAAAAATGTTAAAACAGACGCTTGCAATAAATTGG
AGCAGTGTGTATGTATCCAAATCCAACAATCAACAGACTTCCGAATCATA
TGTGAAAATTGTCTGAGGTCTGTCTCAAATATCACTAAAAAGCAAAACCT
AAAAATCGAAGTGTTCCAGGATGGCAGGAAACATGGTGAACAAAAATTTA
TAAGAACTAAGATAAAGAGACTGTCAAAAGGAAACAAAGAACCAAACAGC
AGAAAGAAATTGTCAAGTCAATTCGATGGTTTGAAACTTGGAGCTAAAAA
TTCCACTATGAAAGTAAGTTACTTTTGCTTTGTTTTGCATTTGATTCGTT
TATTTGTTTATTGTAAATGTGACAGTCTAATTTAAACGTTCTTTATAAGT
ACGGGGTAAATTTTTGCGAGGATCGTTATACTTAGAAAAATTAATTTTTT
GGGCCTCAAATTATGCTTTTTATGTAATGTTTGGATATACTAAGCAATAG
TAACTGTAATTTGGACCTAGGTGTATTCAAAAGAGAAAAATTCATGCATT
AGCTTTGATTGAAAAAATGGACCCTGTCAGATACAGGTTGCTTAAAATGG
ACCCTGTCAGAGTCAGAATGCTAAAATTTCCACAATTCCTTGTAAAAGAG
TGCTAAAATGACAAAAAGTTATTTAAAGTTAACCCAGTCAGTTTGTTTTC
GTTGTTTCACTTAAGTTCCAGGATTTTTGTCCCAGTCAGTCAAAGAATAC
TTCAAAATTCCAACCATGTCAGAGCCATTTCTTGATTTTGGACCGACACC
TGTCAGAGATTCGCGAGGGTTGAAAAAGGGACCCTGCCCAGCGGTACGTC
ATCGTACCCATTTTACCTAAAGTGGTAACCAATCTCCTTCCCGGGGGATT
GGTTATGAAAATGGTCTTAAGATTTTTGTAATTGGTCGGTACCCGACTTA
TTCAATAAAACATTAAATTAAAAAATAATGAGGAAATAAGAAGGAAAATC
CTAAGTAAGACCAATGATTAGAAAGTAATTGTGGAGATAGAGATTTTCAA
AAGGAGCCAAAAGTAAATGATGTTGTCTTAATATCTTATTCAAATAACCG
ATTTAGGGAATCTATTATTTAAATTTTAGGATCTTTCCCCAGCACCAACT
CTTGGTCAATTTTTTTCAAACTGGGCTCAATTTTAGGAATTACATTTTAC
CCTTGTTAAATAAAATACCCTTTTATGTCTGGAATAATTTGCTATGTTTC
ATTAGCCAATTTATCAATTACTTTGAAATTGTGTTCCAATATTGTTCGCT
AAAATGTTAATTAACTTAATGAAAATTATTTTAGGGGTCTGTCTGGGAAC
ACGTAGAATTTCGGTCAATTGGTTTATGTCATGCATGTCATACAAATTCT
TATAAAGGGTAAAACGAACCCCTAAACTCAGGCTCAGTATTAAAAATTGG
ACCAAGACTTAGCGTTGGGGACCGATTATTTCTAAAACGAGAAGAGTTAA
GGATTCCCAAAATCTATAGTTTATCCTTACTTAGCTAAGATATGAATTGG
CTCCCAGACCAAAGACTTTTGTAAATGCAAATATGGTTACAAAAACTTTC
TAATTATTGCTAAGATGAAGTCGAAATTACTTTTTCTATGATTAAGTTTA
AAGGCTTGGTCATCGCTGAGTAACTGCGAAAATTTGAAAAATACATAGTG
GGAATTTATAACATCTTGGTTGGACAACCATTAAAATAGTGTTCAATACT
TCGTAGCGGAATTATATCTTTCGAAAATTCACAATGTTGAAAATACATTA
CTTAAAGTTTCATGCTTATCGCAATCATCAGATGTGTAAAAACATAGTGG
GAATTTAAAAAATATATATTTCCAGAATATTTTTTGTTTTTCTTTAAGAT
GACGGTTACAGACGAAAAAGGCTCTACTGAAGCAGAAATTCACATTCCAA
AGCAGCAACAAAAATTGATCAAACTTGCCATGGCTAACAATAAAAAACAC
CTGTTGAATTATATCCTGACCAGTATAAAACCCGAAGACTGTGAAATTGA
GAATATTGTCATGAAATTCGTCCAGAAAAATATCAAACGTGAGATTAAAC
AGATTTGCTCAAATAATAACAAAACAACGACGTTTCGTTGCCATGATGTA
TCACAACTCACAGAACTGTCGTATGATGCTCAGTATCAAGAACTTCAATC
GGTTGCACCTTATACATTTAAATCAATTGTTAGTATGGCAAAGAATCCAC
GTGAAAACAGAAATAAACACAAGAAACTGGAAACATCTATACCGGCCGTC
ATGAATGCTGTTAATTCGCTACTGATGTGCAGAAATCGAATGCTAAACCG
TTGCGCCGTTATGAATAGCATTATTCTTAAGAAGGGAAAGGCTGACAAAC
AATGCTTCAATAGATTTAACGCACTGCAGACATGCGTATCATACAAAGAA
ACACTATCAAAACAAACAGAGTTGGGCAAGGGTCATAGAAATACAATCAA
GGAATGGGGAAGGGACATAGTCAAATACAGGCAGGCAACGAAGGAAGCAG
CCAAAGCTCAAATGATGGATGAAGAAAAAGAGTTGGTTCTAACAAAAGGC
GACTGTCCAGTCAATTTGTTCAATGTGGAAAGTAGTTTCCTAGATAAAGC
AGCTATCATGAAACCAAAATTTCGTCTACTTGAGGATACAATCGAGGAAG
AAATGGAAGTATTTGATACAGAAGAGTCTGACCGAGCAATAGCAGATTTG
CTGGATGAAGAGGTGCCAGTTCTCCCAGTCGATGTTTCAACACCTGATAC
TTCATTCGACTTCGATTTCCAGGTTAGTAAACCAACGTTTATCTAAATAT
AACTAGCAATGGATAGAATTTAGATTAGATCACATCACTGATTAGATTAC
GATTTTGTTTGCGTTGGGAATATACGTGTGAGTGGAATATTATCAGACAA
AAATTTTCTGAGACAATTTCGATGAAATCTGTAAAAGAAAGTAGACAGAC
TTTACTTTTACTGTTAACTACCTGTTTCATAAATATGAAATTTTGGAGAT
CAATATCCAAGCACAAATAAGCATTATCTTTGCAAACGTGTGTCAAAATA
GACCAGAAGTAAAAAGTAGGTAAAAGATAATTATTTCGTTTTATCATCAA
TAGCTTCAACGAGTCGTCACATCGACACCACCATCAAAACAATCCAAATC
TATCATGAACGTCATCCAATCGTCCACTCAGCAACCTAACTTCAATTACA
GTCCTTCTTCGTATGACGTCGTCCAATCGTTCACTCAGGAACCTAACGTC
AATCACAGTCCCTCGTCTGACTGCATCCAATCGTTCACTCAGGAACCTAA
CGTAAATCACAGTCCTTCTTCGTCTGACGTCATCCAATCGTCCACTCAGC
AACCTAACGTCAATTACAGTCCTTCTTCGTATGACGTCATCCAATCGTTC
ACTCAGGAACCTAACGTCAATCACAGTCCTTCGTCTGACGTCATCCAATC
GTTCACTCAGCAACCTAACGTCAATCACATTTCTTCGCCTGGCGTCATCC
AATCGTCCACTCAGGAACCTAACGTCAATCACAGTCCTTCGTCTGATGTC
ATCCAATCGTTCACGCATGAACCTAACGTCAATAACAGTCCTTCTTCGTC
TGACGTCATCCAATCGTTCACTCAGCAACCTAACGTCAATCACAGTCCTT
CGTCTGAT

Coding sequence (CDS) from alignment at scaffold_94:19064..22971-

>TCONS_00073537 ID=TCONS_00073537|Name=TCONS_00073537|organism=Clytia hemisphaerica|type=CDS|length=1905bp|location=Sequence derived from alignment at scaffold_94:19064..22971- (Clytia hemisphaerica)
ATGGAATCGAACGAAGAAGCAGATACTCCAAAGAAATATAGTAGATCGCT
ATCTCCAAGTGCTTTTAACATTTGTATTTTATGTACAGAAGAGATTCCTT
CAAATCGACGCCATCGCCTGTTCGATGATAAAAATGTTAAAACAGACGCT
TGCAATAAATTGGAGCAGTGTGTATGTATCCAAATCCAACAATCAACAGA
CTTCCGAATCATATGTGAAAATTGTCTGAGGTCTGTCTCAAATATCACTA
AAAAGCAAAACCTAAAAATCGAAGTGTTCCAGGATGGCAGGAAACATGGT
GAACAAAAATTTATAAGAACTAAGATAAAGAGACTGTCAAAAGGAAACAA
AGAACCAAACAGCAGAAAGAAATTGTCAAGTCAATTCGATGGTTTGAAAC
TTGGAGCTAAAAATTCCACTATGAAAATGACGGTTACAGACGAAAAAGGC
TCTACTGAAGCAGAAATTCACATTCCAAAGCAGCAACAAAAATTGATCAA
ACTTGCCATGGCTAACAATAAAAAACACCTGTTGAATTATATCCTGACCA
GTATAAAACCCGAAGACTGTGAAATTGAGAATATTGTCATGAAATTCGTC
CAGAAAAATATCAAACGTGAGATTAAACAGATTTGCTCAAATAATAACAA
AACAACGACGTTTCGTTGCCATGATGTATCACAACTCACAGAACTGTCGT
ATGATGCTCAGTATCAAGAACTTCAATCGGTTGCACCTTATACATTTAAA
TCAATTGTTAGTATGGCAAAGAATCCACGTGAAAACAGAAATAAACACAA
GAAACTGGAAACATCTATACCGGCCGTCATGAATGCTGTTAATTCGCTAC
TGATGTGCAGAAATCGAATGCTAAACCGTTGCGCCGTTATGAATAGCATT
ATTCTTAAGAAGGGAAAGGCTGACAAACAATGCTTCAATAGATTTAACGC
ACTGCAGACATGCGTATCATACAAAGAAACACTATCAAAACAAACAGAGT
TGGGCAAGGGTCATAGAAATACAATCAAGGAATGGGGAAGGGACATAGTC
AAATACAGGCAGGCAACGAAGGAAGCAGCCAAAGCTCAAATGATGGATGA
AGAAAAAGAGTTGGTTCTAACAAAAGGCGACTGTCCAGTCAATTTGTTCA
ATGTGGAAAGTAGTTTCCTAGATAAAGCAGCTATCATGAAACCAAAATTT
CGTCTACTTGAGGATACAATCGAGGAAGAAATGGAAGTATTTGATACAGA
AGAGTCTGACCGAGCAATAGCAGATTTGCTGGATGAAGAGGTGCCAGTTC
TCCCAGTCGATGTTTCAACACCTGATACTTCATTCGACTTCGATTTCCAG
CTTCAACGAGTCGTCACATCGACACCACCATCAAAACAATCCAAATCTAT
CATGAACGTCATCCAATCGTCCACTCAGCAACCTAACTTCAATTACAGTC
CTTCTTCGTATGACGTCGTCCAATCGTTCACTCAGGAACCTAACGTCAAT
CACAGTCCCTCGTCTGACTGCATCCAATCGTTCACTCAGGAACCTAACGT
AAATCACAGTCCTTCTTCGTCTGACGTCATCCAATCGTCCACTCAGCAAC
CTAACGTCAATTACAGTCCTTCTTCGTATGACGTCATCCAATCGTTCACT
CAGGAACCTAACGTCAATCACAGTCCTTCGTCTGACGTCATCCAATCGTT
CACTCAGCAACCTAACGTCAATCACATTTCTTCGCCTGGCGTCATCCAAT
CGTCCACTCAGGAACCTAACGTCAATCACAGTCCTTCGTCTGATGTCATC
CAATCGTTCACGCATGAACCTAACGTCAATAACAGTCCTTCTTCGTCTGA
CGTCATCCAATCGTTCACTCAGCAACCTAACGTCAATCACAGTCCTTCGT
CTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045643XLOC_045643Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073537-proteinTCONS_00073537-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073537-exon-scaffold_94-1575043694:22459..22971TCONS_00073537-exon-scaffold_94-1575043694:22459..22971Clytia hemisphaericaexon
TCONS_00073537-exon-scaffold_94-1575043694:19950..20873TCONS_00073537-exon-scaffold_94-1575043694:19950..20873Clytia hemisphaericaexon
TCONS_00073537-exon-scaffold_94-1575043694:19064..19618TCONS_00073537-exon-scaffold_94-1575043694:19064..19618Clytia hemisphaericaexon
TCONS_00073537-exon-scaffold_94-1510915933:22459..22971TCONS_00073537-exon-scaffold_94-1510915933:22459..22971Clytia hemisphaericaexon
TCONS_00073537-exon-scaffold_94-1510915933:19950..20873TCONS_00073537-exon-scaffold_94-1510915933:19950..20873Clytia hemisphaericaexon
TCONS_00073537-exon-scaffold_94-1510915933:19064..19618TCONS_00073537-exon-scaffold_94-1510915933:19064..19618Clytia hemisphaericaexon
TCONS_00073537-exon-scaffold_94-1491911889:22459..22971TCONS_00073537-exon-scaffold_94-1491911889:22459..22971Clytia hemisphaericaexon
TCONS_00073537-exon-scaffold_94-1491911889:19950..20873TCONS_00073537-exon-scaffold_94-1491911889:19950..20873Clytia hemisphaericaexon
TCONS_00073537-exon-scaffold_94-1491911889:19064..19618TCONS_00073537-exon-scaffold_94-1491911889:19064..19618Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:19064..22971 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.238773	0.271649	0.518174	0.418786	0.429332	0.445284	1.71398	1.7483	0.318582	0.747692	0.524137	0.225281	0.185267	0.233631	0.282465	0.363754	0.179246	0.336823	0.549946	0.221338	0.23086	0.365967	0.114072	0.207416	0.0854535	0.0571989	0.327406	0.232944	0.772974	0.315015
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073537 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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