|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073591 ID=TCONS_00073591|Name=TCONS_00073591|organism=Clytia hemisphaerica|type=transcript|length=1579bpRun BLAST on NCBI protein sequence of TCONS_00073591-protein >TCONS_00073591-protein ID=TCONS_00073591-protein|Name=TCONS_00073591-protein|organism=Clytia hemisphaerica|type=polypeptide|length=497bp IVAGMNNGQAVQVTVKNGQIVNQQLQQRQNNTMVQQSQTNNTATNPQQQLRun BLAST on NCBI transcript from alignment at scaffold_95:115032..135218- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073591 ID=TCONS_00073591|Name=TCONS_00073591|organism=Clytia hemisphaerica|type=transcript|length=20187bp|location=Sequence derived from alignment at scaffold_95:115032..135218- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_95:115032..135218- >TCONS_00073591 ID=TCONS_00073591|Name=TCONS_00073591|organism=Clytia hemisphaerica|type=CDS|length=1494bp|location=Sequence derived from alignment at scaffold_95:115032..135218- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073591 vs. Swiss-Prot (Human)
Match: MED15 (Mediator of RNA polymerase II transcription subunit 15 OS=Homo sapiens GN=MED15 PE=1 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 9.447e-17 Identity = 77/270 (28.52%), Postives = 126/270 (46.67%), Query Frame = 3
Query: 675 TDEMLYQEKLVNLRKYVEPLNKMLQKTPKDEEHHKEREKLRGLLDILTNSRRRVKLQILTQCEAVLKRLIPSTPNSAGPTSMKTPEPFDVSVNTPARPAGLQPMGEVVTNVITSANLMAETRQNILPGMYALNVPMISXXXXXXXXXXXXXXYEQPKKTISLPRALQMEIVNLTSNRFSISLDKTKPMDSEGMTIRCKYNNDLVASHLGTLLIQVSSGYPRTEPSF---SFLDTTQPSTQDLSSRMTKKLSRLPHTLTFTAILLSWEQSL 1475
+E Y +KL L KY+EPL +M+ K K+E+ K+ K++ LLDILT+ +R L+ L +CE L++L M P P V + QP+ + V I S + +P M A++ P I+ P R R Q S+P LQ E+ L +F ++LD + ++ + + CK ++ + S + L + V + YP P + + P Q + MT +L +LP + TA+L +W QS+
Sbjct: 527 AEEQQYLDKLKQLSKYIEPLRRMINKIDKNEDRKKDLSKMKSLLDILTDPSKRCPLKTLQKCEIALEKL---------KNDMAVPTPPPPPVPPTKQQYLCQPLLDAVLANIRSPVFNHSLYRTFVPAMTAIHGPPITAPVVCTRKRRLEDDERQ-----SIPSVLQGEVARLDP-KFLVNLDPSHCSNNGTVHLICKLDDKDLPS-VPPLELSVPADYPAQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSV 780 The following BLAST results are available for this feature:
BLAST of TCONS_00073591 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.