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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073648 ID=TCONS_00073648|Name=TCONS_00073648|organism=Clytia hemisphaerica|type=transcript|length=3570bpRun BLAST on NCBI protein sequence of TCONS_00073648-protein >TCONS_00073648-protein ID=TCONS_00073648-protein|Name=TCONS_00073648-protein|organism=Clytia hemisphaerica|type=polypeptide|length=566bp MMMNQAELQFISNSTDDVEIFGISDHCFKCNLRFLGQTSFGHPLKFAVDSRun BLAST on NCBI transcript from alignment at scaffold_97:253155..285796+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073648 ID=TCONS_00073648|Name=TCONS_00073648|organism=Clytia hemisphaerica|type=transcript|length=32642bp|location=Sequence derived from alignment at scaffold_97:253155..285796+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_97:253155..285796+ >TCONS_00073648 ID=TCONS_00073648|Name=TCONS_00073648|organism=Clytia hemisphaerica|type=CDS|length=1701bp|location=Sequence derived from alignment at scaffold_97:253155..285796+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00073648 vs. Swiss-Prot (Human)
Match: HGNAT (Heparan-alpha-glucosaminide N-acetyltransferase OS=Homo sapiens GN=HGSNAT PE=1 SV=2) HSP 1 Score: 313.923 bits (803), Expect = 1.741e-92 Identity = 168/397 (42.32%), Postives = 245/397 (61.71%), Query Frame = 3
Query: 600 SIDVFRGITICLMIFVNYGGGGYHFFQHSVWNGLTITDLVFPWFMFIMGISITLSFNSFRKSAKTYKQAFVDILVRSVKLFALGMLL---NMGQNMTTW---RVPGVLQRFAICYLFVATLNL-FTYPSQKTLILVNSRSWTSPFKDLVPHLIQWFIMFAIVASHILVTFKLDVPGCPRGYVGPGGLDNHGHYENCTGGAAGYIDRLVLGDNHIYGYPTCKEMYQTTQHFDPEGILGILPSLLLTFLGVHAGEIITLYPSH-KSRLLRWFVWALITAGIGISMTFGTLNEGIIPINKNLWSISFVLVSASTCYIMMILCYLLNDIRRIWNGAPFYFCGMNAIALYLGHMLIP--FNFYWH-TDPQTHTSATVRAGGGTLIWIIWAYYLYWKKLFFTV 1757
S+D FRGI + LM+FVNYGGG Y +F+H+ WNGLT+ DLVFPWF+FIMG SI LS S + + + I RS L +G+++ N +W R+PGVLQR + Y VA L L F P + + RS S +D+ QW ++ + + +TF L VPGCP GY+GPGG+ + G Y NCTGGAAGYIDRL+LGD+H+Y +P+ +Y T +DPEGILG + S+++ FLGV AG+I+ Y + K L+R+ W I I +++T + NEG IP+NKNLWS+S+V +S + ++++ Y + D++ +W G PF++ GMN+I +Y+GH + F F W D Q+H + T +W++ AY LY KK+F+ +
Sbjct: 270 SVDTFRGIALILMVFVNYGGGKYWYFKHASWNGLTVADLVFPWFVFIMGSSIFLSMTSILQRGCSKFRLLGKIAWRSFLLICIGIIIVNPNYCLGPLSWDKVRIPGVLQRLGVTYFVVAVLELLFAKPVPEHC--ASERSCLS-LRDITSSWPQWLLILVLEGLWLGLTFLLPVPGCPTGYLGPGGIGDFGKYPNCTGGAAGYIDRLLLGDDHLYQHPSSAVLYHTEVAYDPEGILGTINSIVMAFLGVQAGKILLYYKARTKDILIRFTAWCCILGLISVALTKVSENEGFIPVNKNLWSLSYVTTLSSFAFFILLVLYPVVDVKGLWTGTPFFYPGMNSILVYVGHEVFENYFPFQWKLKDNQSHKEHLTQNIVATALWVLIAYILYRKKIFWKI 663 The following BLAST results are available for this feature:
BLAST of TCONS_00073648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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