TCONS_00073710 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073710
Unique NameTCONS_00073710
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length946

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073710 ID=TCONS_00073710|Name=TCONS_00073710|organism=Clytia hemisphaerica|type=transcript|length=946bp
TAAATACGGGATTCGATTTGATGGTCAGTTACCGAATATCGGAACAAACG
GAAATATGTCTTACAATGTGGTTTGGCGGTGTAACGGAATGATGGTCAAA
GGTGATTACCACAATGTGACAAACAACCTTGCCTTCCACAAACGGAACGC
TCAAGATAGTGATGGTCAAGGGACAGGTTGTATGCTGTGCGTCATCTCGA
AGCTCCGGCAATTTCCTGGCATTATGAACAACCATACAGAAGTGTGTAAC
AATGCTGCTGATGTGGCGAACGGTGGTGTCAATGTCAAAGATAGGAAGAA
TCCTTTACCTTTTTCTGCTGTCTTGAGAAACAATTTATTTAATGATGACT
TCATAGCAAATGACAATTTCATTGATAttcaaaatttcgattttcggccT
ATCCCGTTATCGGAAGCAGCTACGAAGAGGATTGGGCCTTACAATGATGT
GAATGAGACTGGCGTTTATTGGATCCCAGGGCGTGAAGAAAAGACGCCAT
CATTCCCTATCCCACCACACAAATCATTGATCGATATTCGAAACCCACGT
GATTCCCTTATATGGAAGAACGCGTATGGTTGTCATAAACACCGAGTATT
TTTCGGTGAAAGTCGGGAAACGATGATTAAACTCGGTGATGTTGAAAAGC
CGAGAAATATGATCGACTTACCGAgtcaattaaaaaataatttggttTAT
TATTGGAAAGTAGAAACCTTTTGTAATGACAATGGAGATTTGACGGTTGC
TAGGAAACGAGAATCTGTTAATGGAGACAGAATTAACTACGATTGGACCA
AAACCAGGACCATTGAGAGTCAGATATGGACATTCAAAACGAACTGACCT
AAAATCCTAAAATTGATATCATTCTTCAGTAATATTCTTCagtaatttct
tttcaaattttgtgagtatttttgtgctttaTCCAAAGAAACTCGc
Run BLAST on NCBI

protein sequence of TCONS_00073710-protein

>TCONS_00073710-protein ID=TCONS_00073710-protein|Name=TCONS_00073710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
KYGIRFDGQLPNIGTNGNMSYNVVWRCNGMMVKGDYHNVTNNLAFHKRNA
QDSDGQGTGCMLCVISKLRQFPGIMNNHTEVCNNAADVANGGVNVKDRKN
PLPFSAVLRNNLFNDDFIANDNFIDIQNFDFRPIPLSEAATKRIGPYNDV
NETGVYWIPGREEKTPSFPIPPHKSLIDIRNPRDSLIWKNAYGCHKHRVF
FGESRETMIKLGDVEKPRNMIDLPSQLKNNLVYYWKVETFCNDNGDLTVA
RKRESVNGDRINYDWTKTRTIESQIWTFKTN
Run BLAST on NCBI

transcript from alignment at scaffold_97:294416..297766-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073710 ID=TCONS_00073710|Name=TCONS_00073710|organism=Clytia hemisphaerica|type=transcript|length=3351bp|location=Sequence derived from alignment at scaffold_97:294416..297766- (Clytia hemisphaerica)
TAAATACGGGATTCGATTTGATGGTCAGTTACCGAATATCGGAACAAACG
GAAATATGTCTTACAATGTGGTTTGGCGGTGTAACGGAATGATGGTCAAA
GGTGAGGCATTTGACTAGACTCGTAGACTCGGGGTCATTCTTTGTATTCT
TTCGCGAACATTGCATAGCTGAACACTTAACCGTTCATATTTTTAAGTGT
ATTTTCTCAAGCAACCTTGCTTCCCTCAAATCAAATACTTCAGACAGTGA
AGGCAAAAGCCGGAATCTGTGTCACTCCAAGACTCTGGAAAAGTTGAGGT
GGGCAAGAGGAGCAAGGGGAACTGGAAATGGGTCAAGAGGCAAGGAATAA
TTGGAATAGAAAGATGGGGAACAGCTCANAGCAAGGGGAACTGGAAAAGG
GTCAAGAGGCAAGGAATAATTGGAATAGAAAGATGGGGAACAGCTCAGCA
GGGCAAATTGGGTATGTAAATGGAAGGGGACGCTGTATACGTCCTAATTC
AATTGTCTATCTCCTTTTTGTTATAGGTGATTACCACAATGTGACAAACA
ACCTTGCCTTCCACAAACGGAACGCTCAAGATAGTGATGGTCAAGGGACA
GGTTGTATGCTGTGCGTCATCTCGAAGCTCCGGCAATTTCCTGGCATTAT
GAACAACCATACAGAAGTGTGTAACAATGCTGCTGATGTGGCGAACGGTG
GTGTCAATGTCAAAGATAGGAAGAATCCTTTACCTTTTTCTGCTGTCTTG
AGTGAGTGCAAATTATTACTATTTATTAAATCAAAAAATTTAAACTGAAA
ACTACAAGAAAAATGTTCTGTTCAGGGGCTTGCAATACTGTTGTACCCCA
GTCATGTACTTATGTCATTATATTGTCACATTAATTCGAACTGCAGCGGG
GGTCCAATTTGTTCGAATTACAGAGTGATTTCAATTATAAAAACTATTTT
AGAAGGGTTTTCTTTACCGTTCACTGCTGTCTTGAGTAACTCCCGCTAAT
CTCAAACTCGAACGGGAAGTCTTTTTTGGTTCAAATTATAGAAGCGATAG
TCCATTTGAGACTTTACGAGGCATTTCTAACAGAAAAAAAACAAATTAAA
AAAGGGTCACTTGCCATGAAACCACTGACTTTTGTATATCCCTGGACCAA
GCTATATCCGCCATCTTTGATCGCAACTGTTTTTAATTTGTACCCGTAAA
GAAGCAATTGCAATGTTAAAAATTAATGTCTAACGGCGCTACATCATCAA
AAGTTTTCGAGGGAAAGTAGATATAGCGCTCTCGATGCATTTACACCGCT
ATTGAGTAGTGCCACCATTAGGGTACCACTTTTCAAAAAACTCAAAGATT
TAGTTTGGCCGAGATTGGGAAACTTGGTCCAGGGTATATAAAGGTCAGTA
CATAAAACACCTAGCCCAAAGCGATCAAGAATCTTGTAGGGCGTGAAGGC
CCAGCGACTCAATAAAGTAACAAGGCGCCGTTTCTTCAAAACTGAACTTG
AATAGACAAAGTGCTGCTTATTCAAAAACGGACATACAGTACATGCGACA
TGAAAGGCCAAATGCTGGGCCAACTATTAATCAAAGAAAATTAATTGAGT
GTTTGTTTAATATTTAGGAAACAATTTATTTAATGATGACTTCATAGCAA
ATGACAATTTCATTGATATTCAAAATTTCGATTTTCGGCCTATCCCGTTA
TCGGAAGCAGCTACGAAGAGGATTGGGCCTTACAATGATGTGAATGAGAC
TGGCGTTTATTGGATCCCAGGTGAGAAAAAGAACTTTTCTTGTACCAATA
GTAAAGAGGGCACATTGAGTTGCGAACACCGAAATAACGGCGCTTTCTTT
CTTTTCTTTCTTCTTCTTTACCTTCCACACCGCTTAAAAGAATTTCTAAA
AGTCTGACATTTTCACCGCGTGAGAAACCGTTACTTTTTTCCTCAAACAC
CAAAAAACCGACGAAAAAGGGAAATAATACCCATAATTATATGGTTGATT
ATATTTAGCTTAGATTTGTAAAGGACGAGCGGGGTGATAAATCCGTAATA
GCCCCGCTTTTTTGTAATCGCCCTGATGTAAACNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNATCGTACGAAATTTTTAAGCCAATCAAAATAAGAGTGT
CAGTCGAATGTTTTTTTATAGTTTCGAATGTTTTTATAAGTTTCGAAAAG
AATAGCGATTGAGTGTTCTAAACCATGTTATTACTAGTACTAATACCGTC
ACACTTCAAACATGCATTCTCTGCCCTAAGGAAGCTAGCACACAAAATTA
GCGTTTTTTTGCGGGAACTAAAATTTCGCGATGGATACCCTCTTTTTTCA
GTTTCTTTGTAGTTTTTACAGATTTATGATTCGTAAAAAAATTTTGAGTA
ATTTTTCAACAACCAGTTGCCTATTAAACGGAGAGGGTCCCTTTGGTGAT
TTAATTTTATTGTTTGTGAGAAAAGAGTTTGCGAATTTCCTTGGTGGACC
GTAATATACGCCTGAATATTATTTTCTTACGAAGACCAGGAATCCATTTG
TTCGAGTTAAGAAAAATTCAAGTTATGGAGTAAGGTTCATAAGGCATTGT
TACCTGAAGGGACGAGAGAACTTGTTCGAGTTAAGGAGACCTTACTGTAT
TACAATACATATGAACATTCAAAAACGTTCTGTTTCAGCCAGGAAATCCC
ACATGATAAATCAGCATTACGTTTTACATTATAGGGCGTGAAGAAAAGAC
GCCATCATTCCCTATCCCACCACACAAATCATTGATCGATATTCGAAACC
CACGTGATTCCCTTATATGGAAGAACGCGTATGGTTGTCATAAACACCGA
GTATTTTTCGGTGAAAGTCGGGAAACGATGATTAAACTCGGTGATGTTGA
AAAGCCGAGAAATATGATCGACTTACCGAGTCAATTAAAAAATAATTTGG
TTTATTATTGGAAAGTAGAAACCTTTTGTAATGACAATGGAGATTTGACG
GTTGCTAGGAAACGAGAATCTGTTAATGGAGACAGAATTAACTACGATTG
GACCAAAACCAGGACCATTGAGAGTCAGATATGGACATTCAAAACGAACT
GACCTAAAATCCTAAAATTGATATCATTCTTCAGTAATATTCTTCAGTAA
TTTCTTTTCAAATTTTGTGAGTATTTTTGTGCTTTATCCAAAGAAACTCG
C

Coding sequence (CDS) from alignment at scaffold_97:294416..297766-

>TCONS_00073710 ID=TCONS_00073710|Name=TCONS_00073710|organism=Clytia hemisphaerica|type=CDS|length=846bp|location=Sequence derived from alignment at scaffold_97:294416..297766- (Clytia hemisphaerica)
AAATACGGGATTCGATTTGATGGTCAGTTACCGAATATCGGAACAAACGG
AAATATGTCTTACAATGTGGTTTGGCGGTGTAACGGAATGATGGTCAAAG
GTGATTACCACAATGTGACAAACAACCTTGCCTTCCACAAACGGAACGCT
CAAGATAGTGATGGTCAAGGGACAGGTTGTATGCTGTGCGTCATCTCGAA
GCTCCGGCAATTTCCTGGCATTATGAACAACCATACAGAAGTGTGTAACA
ATGCTGCTGATGTGGCGAACGGTGGTGTCAATGTCAAAGATAGGAAGAAT
CCTTTACCTTTTTCTGCTGTCTTGAGAAACAATTTATTTAATGATGACTT
CATAGCAAATGACAATTTCATTGATATTCAAAATTTCGATTTTCGGCCTA
TCCCGTTATCGGAAGCAGCTACGAAGAGGATTGGGCCTTACAATGATGTG
AATGAGACTGGCGTTTATTGGATCCCAGGGCGTGAAGAAAAGACGCCATC
ATTCCCTATCCCACCACACAAATCATTGATCGATATTCGAAACCCACGTG
ATTCCCTTATATGGAAGAACGCGTATGGTTGTCATAAACACCGAGTATTT
TTCGGTGAAAGTCGGGAAACGATGATTAAACTCGGTGATGTTGAAAAGCC
GAGAAATATGATCGACTTACCGAGTCAATTAAAAAATAATTTGGTTTATT
ATTGGAAAGTAGAAACCTTTTGTAATGACAATGGAGATTTGACGGTTGCT
AGGAAACGAGAATCTGTTAATGGAGACAGAATTAACTACGATTGGACCAA
AACCAGGACCATTGAGAGTCAGATATGGACATTCAAAACGAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045767XLOC_045767Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073710-exon-scaffold_97-1575043694:297666..297766TCONS_00073710-exon-scaffold_97-1575043694:297666..297766Clytia hemisphaericaexon
TCONS_00073710-exon-scaffold_97-1575043694:297016..297240TCONS_00073710-exon-scaffold_97-1575043694:297016..297240Clytia hemisphaericaexon
TCONS_00073710-exon-scaffold_97-1575043694:295997..296149TCONS_00073710-exon-scaffold_97-1575043694:295997..296149Clytia hemisphaericaexon
TCONS_00073710-exon-scaffold_97-1575043694:294416..294882TCONS_00073710-exon-scaffold_97-1575043694:294416..294882Clytia hemisphaericaexon
TCONS_00073710-exon-scaffold_97-1510915933:297666..297766TCONS_00073710-exon-scaffold_97-1510915933:297666..297766Clytia hemisphaericaexon
TCONS_00073710-exon-scaffold_97-1510915933:297016..297240TCONS_00073710-exon-scaffold_97-1510915933:297016..297240Clytia hemisphaericaexon
TCONS_00073710-exon-scaffold_97-1510915933:295997..296149TCONS_00073710-exon-scaffold_97-1510915933:295997..296149Clytia hemisphaericaexon
TCONS_00073710-exon-scaffold_97-1510915933:294416..294882TCONS_00073710-exon-scaffold_97-1510915933:294416..294882Clytia hemisphaericaexon
TCONS_00073710-exon-scaffold_97-1491911889:297666..297766TCONS_00073710-exon-scaffold_97-1491911889:297666..297766Clytia hemisphaericaexon
TCONS_00073710-exon-scaffold_97-1491911889:297016..297240TCONS_00073710-exon-scaffold_97-1491911889:297016..297240Clytia hemisphaericaexon
TCONS_00073710-exon-scaffold_97-1491911889:295997..296149TCONS_00073710-exon-scaffold_97-1491911889:295997..296149Clytia hemisphaericaexon
TCONS_00073710-exon-scaffold_97-1491911889:294416..294882TCONS_00073710-exon-scaffold_97-1491911889:294416..294882Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073710-proteinTCONS_00073710-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:294416..297766 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.00714379	0.00733233	0	0	0.00776187	0	0	0	0	0	0.00490708	2.3371	2.59334	0.265026	0.137153	1.23154	1.10143	1.11741	0.664839	0.842784	0.872899	0.752132	0.73773	0.20277	0.281832	0.373387	0.333682	2.38526	2.48895
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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