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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073829 ID=TCONS_00073829|Name=TCONS_00073829|organism=Clytia hemisphaerica|type=transcript|length=2664bpRun BLAST on NCBI protein sequence of TCONS_00073829-protein >TCONS_00073829-protein ID=TCONS_00073829-protein|Name=TCONS_00073829-protein|organism=Clytia hemisphaerica|type=polypeptide|length=592bp MENLNIIFLLVILLFDKQECAPSDVYDEELSIKQLQSGHVYSQFQFVTTWRun BLAST on NCBI transcript from alignment at scaffold_98:196520..219918- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073829 ID=TCONS_00073829|Name=TCONS_00073829|organism=Clytia hemisphaerica|type=transcript|length=23399bp|location=Sequence derived from alignment at scaffold_98:196520..219918- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_98:196520..219918- >TCONS_00073829 ID=TCONS_00073829|Name=TCONS_00073829|organism=Clytia hemisphaerica|type=CDS|length=1779bp|location=Sequence derived from alignment at scaffold_98:196520..219918- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073829 vs. Swiss-Prot (Human)
Match: PIGT (GPI transamidase component PIG-T OS=Homo sapiens GN=PIGT PE=1 SV=1) HSP 1 Score: 394.045 bits (1011), Expect = 2.811e-125 Identity = 224/560 (40.00%), Postives = 318/560 (56.79%), Query Frame = 2
Query: 230 PSDVYDEELSIKQLQSGHVYSQFQFVTTWNVNVFEQQIPPHYNFFPKSFGEILSKFGIVELHFSMTQGRWRHNKWGYPLDSAPTGVELWVWFHPNLNSSVVDKNWSGLVHSLSGQFCSSINFISKAETTSPEFSFKPLGVWPEDTLSPRQHLRYATIPRETVCTENLTPWKKMLPCGNSGGVGLASLLNAVKLYDSSYHSLAVHLRSVCQAGDCSKLALEYKQSVASVFDPHHRG-FNGGWNLRSLFGGVITSRCPLARNSQVIIHTDKIDGLN--------PNHFEKKIILVSGKDVEYAVFDLTKKDLVKFP--FDVQVKMKNRATVTDLKSSYILVHKXXXXXXXXXXXSTCIVRNTHAHKNITLSYLDVIPYFARVYLHTLKLQVNGVQIKPDNLKYTPCYHRERPAKLEFLFTIPPQSDVTISIQFEKIFQDWMQHPPDSHHGFYMSSSVISGIVPFHEELVETIPS--LHHSMFRERFGTTSDEMVFRRIYSEPLLLRIPLPDFSMPYNVICLTCTVIAIGFGSIYNLTTRTFQVEEVKEKRTLKEKILGLFRK 1870
P D EEL I L SG V + FQF T W+ + + + HY FPK+ G+++SK+ + ELH S TQG WR WG P AP+G ELWVWF + VDK+W L + LSG FC+S+NFI T +P SFKPLG+ DT LRYA +PRE VCTENLTPWKK+LPC S GL+ LL A +L+ +SYHS AVH+R VC+ C+ ++ E +Q+++ VFD G W+L +F +T CPLA S+V + + N P + +IL G YA++DL ++ ++Q+K K ++ +Y +GYG + G + ++ NTH ++ + LD +P++ R+Y+HTL + G + KP + Y P R +P LE L +P S +SIQFE+ W ++ PD +HGFY+S SV+S +VP +V P +F F + F R+Y+EPLL+ +P PDFSMPYNVICLTCTV+A+ +GS YNL TRTF +EE + L +++ L R+
Sbjct: 26 PRDSLREELVITPLPSGDVAATFQFRTRWDSELQREGVS-HYRLFPKALGQLISKYSLRELHLSFTQGFWRTRYWGPPFLQAPSGAELWVWFQDTVTD--VDKSWKELSNVLSGIFCASLNFIDSTNTVTPTASFKPLGL-ANDT--DHYFLRYAVLPREVVCTENLTPWKKLLPC--SSKAGLSVLLKADRLFHTSYHSQAVHIRPVCRNARCTSISWELRQTLSVVFDAFITGQGKKDWSLFRMFSRTLTEPCPLASESRVYVDITTYNQDNETLEVHPPPTTTYQDVIL--GTRKTYAIYDLLDTAMINNSRNLNIQLKWKRPPENEAPPVPFLHAQRYVSGYGLQKGELSTLLYNTHPYRAFPVLLLDTVPWYLRLYVHTLTITSKGKENKPSYIHYQPAQDRLQPHLLEMLIQLPANSVTKVSIQFERALLKWTEYTPDPNHGFYVSPSVLSALVP---SMVAAKPVDWEESPLFNSLFPVSDGSNYFVRLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTG-GLAKRLANLIRR 571 The following BLAST results are available for this feature:
BLAST of TCONS_00073829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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