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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012331 ID=TCONS_00012331|Name=TCONS_00012331|organism=Clytia hemisphaerica|type=transcript|length=1483bp
AAAAAAAGGCTTATAACAGActgacggacgaacaaacaaaAGTTAATTTA
TAGGATTTCCAGTTAGGTTCAAAAATGTACTTTCGAACTTTGTGTTCAGT
TAAAAGAATTTATGTCAATTTTCTGCCTTTTTTCTGTCTCTTCGAAGATT
CCAAGATATTTTCGAAGGCATGCGGGCAAGCTTCGATTCAAATAATCATC
ATCAAATACCTTCAAACAGACCAGTCTTGCTTGGTGTTTCAAACTACGAT
CTACTTTTCCAAAGTATTTAACATGGACAAACACATCACTCAAGTCTGAT
GCTATACCTACAAAAGCTACTTCATTCGAGTCCCAGTTAACATCAAGGAA
ATTGAAATCACATCACGATTTGTAGGCAATCAACTCACTGGAATACAAAT
CAAGACTTTGGAAGGAATCTCTGTGTTCTTTACTCAACCAATAATAACAT
TTCTCAAATCTTCTAACCAACCCGTGAAGCCACCATTTACGATTATCATC
CAACTCAACTATATCATCAAACGCTTTCAACAACTTCAAACCGTTCTCAG
TGATTTTATATAGTTTGATATCCAAATATTTTGAATCTTCAACCAAACTG
ATTAAAAcaataattgaattttgaacATACTCAGTCATACCGAGTAATGA
TGATTCACCAAGCTCATCGATTGGGAATGTAAACGAATGATTTCCAGTTG
AGAATATGTAACCACTTAAGTTGACGGATATAATATCAAACCACTGAATA
TAAAAACGATTGGAAGATAAGCCTAACAAAACATCGTGGATTAAATCAGG
TCTTTTCAAATGGACAGGATCTTTGATGAGTACATTCTTAATAAGGTACA
ACTTTTGAGAATCAAATTCGATCAAATCTAAGATGAAATCGTTTCCTCCA
TTATGGAGTAATATAACAATGAAACAACGGTTGTGGTTCACTTTTCTGGT
CTCCAGAAAAACTACGTCAAAACTTTCATCATAAACCACGTCAAGTTGCT
GATACCCATCTTTATCCTCATCCAGAGATACAACCTTGGAGGATCCATCA
ACAAGATTGTTCCTCACATTTCCACTTGTAATGTTCAAATAGATCTTTGT
TTCTTCTTTAACAAGACGTTTGGAGATGGCAAACCATCTGACATGCACCG
AAGAATATAAGAAACGGAAGGGTTTAACAGATGCCTTGATTTTAACCAGA
TTTAATTGCTGTTGGATTTGTTTAGTTGATTCGTTAGTAACAGGTTGTTG
ATGATGGCACTCGGCTACGATCCATCTAAACCCCTGTCCACCAGTGTCTT
TTTCAATGCTTAACAACATGGTGTAGTGTTTGCCAGAGAAATCAAAACCA
TGGTATATGGTTGTATTAAAACTAAACTGTTTCAACTCGTGTGTTGTTCG
AAATGTTATTCCATCAGTTTTGTGAGATTGTAACAAGAAATGCTGTCTGT
AATAGCATTCTCCGTCCCTAGGATCAAtttgag Run BLAST on NCBI protein sequence of TCONS_00012331-protein >TCONS_00012331-protein ID=TCONS_00012331-protein|Name=TCONS_00012331-protein|organism=Clytia hemisphaerica|type=polypeptide|length=372bp
QIDPRDGECYYRQHFLLQSHKTDGITFRTTHELKQFSFNTTIYHGFDFSG
KHYTMLLSIEKDTGGQGFRWIVAECHHQQPVTNESTKQIQQQLNLVKIKA
SVKPFRFLYSSVHVRWFAISKRLVKEETKIYLNITSGNVRNNLVDGSSKV
VSLDEDKDGYQQLDVVYDESFDVVFLETRKVNHNRCFIVILLHNGGNDFI
LDLIEFDSQKLYLIKNVLIKDPVHLKRPDLIHDVLLGLSSNRFYIQWFDI
ISVNLSGYIFSTGNHSFTFPIDELGESSLLGMTEYVQNSIIVLISLVEDS
KYLDIKLYKITENGLKLLKAFDDIVELDDNRKWWLHGLVRRFEKCYYWLS
KEHRDSFQSLDLYSSELIAYKS Run BLAST on NCBI transcript from alignment at sc0000143:258958..260440 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012331 ID=TCONS_00012331|Name=TCONS_00012331|organism=Clytia hemisphaerica|type=transcript|length=1483bp|location=Sequence derived from alignment at sc0000143:258958..260440 (Clytia hemisphaerica)
ctcaaaTTGATCCTAGGGACGGAGAATGCTATTACAGACAGCATTTCTTG
TTACAATCTCACAAAACTGATGGAATAACATTTCGAACAACACACGAGTT
GAAACAGTTTAGTTTTAATACAACCATATACCATGGTTTTGATTTCTCTG
GCAAACACTACACCATGTTGTTAAGCATTGAAAAAGACACTGGTGGACAG
GGGTTTAGATGGATCGTAGCCGAGTGCCATCATCAACAACCTGTTACTAA
CGAATCAACTAAACAAATCCAACAGCAATTAAATCTGGTTAAAATCAAGG
CATCTGTTAAACCCTTCCGTTTCTTATATTCTTCGGTGCATGTCAGATGG
TTTGCCATCTCCAAACGTCTTGTTAAAGAAGAAACAAAGATCTATTTGAA
CATTACAAGTGGAAATGTGAGGAACAATCTTGTTGATGGATCCTCCAAGG
TTGTATCTCTGGATGAGGATAAAGATGGGTATCAGCAACTTGACGTGGTT
TATGATGAAAGTTTTGACGTAGTTTTTCTGGAGACCAGAAAAGTGAACCA
CAACCGTTGTTTCATTGTTATATTACTCCATAATGGAGGAAACGATTTCA
TCTTAGATTTGATCGAATTTGATTCTCAAAAGTTGTACCTTATTAAGAAT
GTACTCATCAAAGATCCTGTCCATTTGAAAAGACCTGATTTAATCCACGA
TGTTTTGTTAGGCTTATCTTCCAATCGTTTTTATATTCAGTGGTTTGATA
TTATATCCGTCAACTTAAGTGGTTACATATTCTCAACTGGAAATCATTCG
TTTACATTCCCAATCGATGAGCTTGGTGAATCATCATTACTCGGTATGAC
TGAGTATgttcaaaattcaattattgTTTTAATCAGTTTGGTTGAAGATT
CAAAATATTTGGATATCAAACTATATAAAATCACTGAGAACGGTTTGAAG
TTGTTGAAAGCGTTTGATGATATAGTTGAGTTGGATGATAATCGTAAATG
GTGGCTTCACGGGTTGGTTAGAAGATTTGAGAAATGTTATTATTGGTTGA
GTAAAGAACACAGAGATTCCTTCCAAAGTCTTGATTTGTATTCCAGTGAG
TTGATTGCCTACAAATCGTGATGTGATTTCAATTTCCTTGATGTTAACTG
GGACTCGAATGAAGTAGCTTTTGTAGGTATAGCATCAGACTTGAGTGATG
TGTTTGTCCATGTTAAATACTTTGGAAAAGTAGATCGTAGTTTGAAACAC
CAAGCAAGACTGGTCTGTTTGAAGGTATTTGATGATGATTATTTGAATCG
AAGCTTGCCCGCATGCCTTCGAAAATATCTTGGAATCTTCGAAGAGACAG
AAAAAAGGCAGAAAATTGACATAAATTCTTTTAACTGAACACAAAGTTCG
AAAGTACATTTTTGAACCTAACTGGAAATCCTATAAATTAACTtttgttt
gttcgtccgtcagTCTGTTATAAGCCTTTTTTT Coding sequence (CDS) from alignment at sc0000143:258958..260440 >TCONS_00012331 ID=TCONS_00012331|Name=TCONS_00012331|organism=Clytia hemisphaerica|type=CDS|length=1119bp|location=Sequence derived from alignment at sc0000143:258958..260440 (Clytia hemisphaerica)
caaaTTGATCCTAGGGACGGAGAATGCTATTACAGACAGCATTTCTTGTT
ACAATCTCACAAAACTGATGGAATAACATTTCGAACAACACACGAGTTGA
AACAGTTTAGTTTTAATACAACCATATACCATGGTTTTGATTTCTCTGGC
AAACACTACACCATGTTGTTAAGCATTGAAAAAGACACTGGTGGACAGGG
GTTTAGATGGATCGTAGCCGAGTGCCATCATCAACAACCTGTTACTAACG
AATCAACTAAACAAATCCAACAGCAATTAAATCTGGTTAAAATCAAGGCA
TCTGTTAAACCCTTCCGTTTCTTATATTCTTCGGTGCATGTCAGATGGTT
TGCCATCTCCAAACGTCTTGTTAAAGAAGAAACAAAGATCTATTTGAACA
TTACAAGTGGAAATGTGAGGAACAATCTTGTTGATGGATCCTCCAAGGTT
GTATCTCTGGATGAGGATAAAGATGGGTATCAGCAACTTGACGTGGTTTA
TGATGAAAGTTTTGACGTAGTTTTTCTGGAGACCAGAAAAGTGAACCACA
ACCGTTGTTTCATTGTTATATTACTCCATAATGGAGGAAACGATTTCATC
TTAGATTTGATCGAATTTGATTCTCAAAAGTTGTACCTTATTAAGAATGT
ACTCATCAAAGATCCTGTCCATTTGAAAAGACCTGATTTAATCCACGATG
TTTTGTTAGGCTTATCTTCCAATCGTTTTTATATTCAGTGGTTTGATATT
ATATCCGTCAACTTAAGTGGTTACATATTCTCAACTGGAAATCATTCGTT
TACATTCCCAATCGATGAGCTTGGTGAATCATCATTACTCGGTATGACTG
AGTATgttcaaaattcaattattgTTTTAATCAGTTTGGTTGAAGATTCA
AAATATTTGGATATCAAACTATATAAAATCACTGAGAACGGTTTGAAGTT
GTTGAAAGCGTTTGATGATATAGTTGAGTTGGATGATAATCGTAAATGGT
GGCTTCACGGGTTGGTTAGAAGATTTGAGAAATGTTATTATTGGTTGAGT
AAAGAACACAGAGATTCCTTCCAAAGTCTTGATTTGTATTCCAGTGAGTT
GATTGCCTACAAATCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012331-exon-sc0000143-1491911889:258958..260440 | TCONS_00012331-exon-sc0000143-1491911889:258958..260440 | Clytia hemisphaerica | exon |
| TCONS_00012331-exon-sc0000143-1510915933:258958..260440 | TCONS_00012331-exon-sc0000143-1510915933:258958..260440 | Clytia hemisphaerica | exon |
| TCONS_00012331-exon-sc0000143-1575043694:258958..260440 | TCONS_00012331-exon-sc0000143-1575043694:258958..260440 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000143 | supercontig | sc0000143:258958..260440 . |
Blast
The following BLAST results are available for this feature:
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