TCONS_00013048 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013048
Unique NameTCONS_00013048
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013048 ID=TCONS_00013048|Name=TCONS_00013048|organism=Clytia hemisphaerica|type=transcript|length=341bp
AGAAAATGAatgtttttggaaatctcccaGCGCTAAAAGGAATTGAAGCC
TATAAGGGGATGAGCATTTGCGAAGATCTAACTCCAGCtcaaagaaaaaa
gtacaaaGAGGCGGCAGAAGATGCTAAGGCACGAAATCAAACCGAAAAAG
ATGGAGTCTGGAGAGTGCGGGGTTTTGCAAAAAACGGATTCGATGTAAAG
AAGATAAACGCCAAAGATCGGCAATAAACCAAACACGAAAAAACCTTAAC
ATACTATATACTAATGCAGACCAACTAActaaaataaagagaaaagaacT
AAATGAAGTGATTTCAAAAGAACAACCCGATATCATTGCNN
Run BLAST on NCBI

transcript from alignment at sc0000161:73924..74264

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013048 ID=TCONS_00013048|Name=TCONS_00013048|organism=Clytia hemisphaerica|type=transcript|length=341bp|location=Sequence derived from alignment at sc0000161:73924..74264 (Clytia hemisphaerica)
NNGCAATGATATCGGGTTGTTCTTTTGAAATCACTTCATTTAgttctttt
ctctttattttagTTAGTTGGTCTGCATTAGTATATAGTATGTTAAGGTT
TTTTCGTGTTTGGTTTATTGCCGATCTTTGGCGTTTATCTTCTTTACATC
GAATCCGTTTTTTGCAAAACCCCGCACTCTCCAGACTCCATCTTTTTCGG
TTTGATTTCGTGCCTTAGCATCTTCTGCCGCCTCtttgtacttttttctt
tgaGCTGGAGTTAGATCTTCGCAAATGCTCATCCCCTTATAGGCTTCAAT
TCCTTTTAGCGCtgggagatttccaaaaacatTCATTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007300XLOC_007300Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013048-exon-sc0000161-1491911889:73924..74264TCONS_00013048-exon-sc0000161-1491911889:73924..74264Clytia hemisphaericaexon
TCONS_00013048-exon-sc0000161-1510915933:73924..74264TCONS_00013048-exon-sc0000161-1510915933:73924..74264Clytia hemisphaericaexon
TCONS_00013048-exon-sc0000161-1575043694:73924..74264TCONS_00013048-exon-sc0000161-1575043694:73924..74264Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000161supercontigsc0000161:73924..74264 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.11775	2.31363	2.67902	2.52928	3.60342	2.17365	2.97165	2.00318	1.42639	1.49534	0.816897	0.612174	5.14905	1.14536	1.21806	1.00879	0.762051	1.36409	4.16354	2.05116	3.43013	2.01015	1.48708	0.332507	6.97075	4.31857	2.22395	0	1.17045	1.82555
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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