XLOC_027208 (gene) - C. hemisphaerica

Overview
NameXLOC_027208
Unique NameXLOC_027208
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0004311:3303..6673-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_027208 ID=XLOC_027208|Name=XLOC_027208|organism=Clytia hemisphaerica|type=gene|length=3371bp|location=Sequence derived from alignment at sc0004311:3303..6673- (Clytia hemisphaerica)
TTTAAATATATGAATGATTTTAATTTAAGTCATTTTCTATCAATCTGCTA
TAAAATTTGTCTAGCCTATAATAATCCACATAGACTGACAAAATTCTTCT
TGCGCTACATTTTCAGCACCAGAAGCTATTCAAAAGTTTGGCGATCGAAC
TTTTCGAAGAATGTACAAAAATGTCGGTCATCAAAGGGTCATCACCGAAG
TCACCAAAGTGTAAGTAATATGATTTTATTTGTCACCTTCACCGTGGAAG
TAAACTCATGTGACCTCAAAACTTTTGCTCTTTCACTCGCCTTCAAACTA
AATAAACAGAACACAAAAATCTAAATTCTTCATCAAAATTTCTCAAATAT
ACATGTGTATATATACGCAGTATGCAGTGCTGACGAGTCCTGATAAGGAC
GAAATGCATATGCTGCTCTGCCACCCAAATCTCAAATGATTTTCTGGTTT
TGAGATGCTGGCTAAATTAATCTGGCCAGTCATGAAATACACCTATTCTG
CCACCCAAATCTACTGATTGAAAATAGTTGGACAGAAATGCTTGTTTTTC
ACGTGTATAAACTTTATTAAGTTTGCAATTTGGTATCTACCCGTAGGCAG
AGGAGCATGTCGCTCTTTATGTGTTAGGTCTTGACGGTTCTTTGATATAC
AGAGGTACGTGATATTCCAACTCTTCTTTCGTTTCACAGGTTAACTTGTT
CATCTTCACCAGGGGACAACGAACAGACGAATATCTTGGTGAATGCAATG
GTAACTTCTATCCTCTCTTTCTCCCTCTCTTCTTCTTTCGATAGAATATT
TTACGTTTGATCCGTCGAATAAACTGAAGACTGAATTTTGCTAGCACTAA
TTCAAACTGTCGACTTTTTGTCTTACTTCCGTTGGGTTTGAAAGACTGTT
GAAAATTGACTGAAAATTGATATCGATGTAACTAATTAATCGATTTCAGA
AATTTCTTATTTCAGAAAACCTTCAAGGAAAACTTCGATGACTTTAGATC
ATACACTATATCCATCCAAGAAAAATTGAAGGTAAATGAAATTCTTCAAG
TTCCCTCCCAAAGCTTTGTCGCAAAAAATATTATAGCTGCAAAAAATCGC
AATGAGATAACATTTATGAGAAGATTTTTATGCATTATTCACTCATTCAT
TTCTGCCAAGTCAATGAGACAGGGATGATATATGATTTTAAATATTTCGG
TTCATTGTACATTGTTCATTGTATCCTTTATTTTCAGACGCAATCTTCCC
TGGACCTTTCACAATCACCTTCCGCCAACAACTCATCACCTACAACCTCC
ATTTCCAACAAATTATTACGTCATCTACAAAATCGTGTGCAACAATTACG
TCATGAAAATATTCAATTGAAAGAGAATTTAAAGAACTCGTTAACGGTAT
GCCATTTGACGTTATCTATTGCCCATTTTTCATGATATGGTATTTTAAGA
TGTTTTTTGTGGATAACTTTCGGTGAAACCTAATTCAAATGTCCATTGAA
ACCAAATCCGTACACCAAGATGAAAAGACTTGTCTTTCCAAACTTTAACC
TGAATGTATTTTCTCAACTCCTTTGCTATCCACTTCCTTCGTCATCCCCG
TTTATTTTCATAAAGTCACTGTAAAGACAGGGATTTAAAACTGTCTGTAC
ACCATCCCCTTGACAATGGGGTACAGCTCGAGTGAAAACGTGTTAACAAA
TCGTGAGAGATTAAATAAGGATATGTTGTTTTGTTATGAATAGTGCGAAA
GATATGTGTGTGCTTTTAACTCATTCTTCTTGTGGGTTTAAAAAACTAAC
GTCAAAAGTAAATGATTTTGCCTTTCAAAATCTTTTCGTCGATGCGGTTG
TATCTAGAACCTTCACTTTCTCGTGAAAGGTAAGCATCCTAGTTTCAATT
GATTACTGATCACAATATTTTAACTAATCTTTAGGACAGGGATTTAATAT
TGTCCGTGCACCATCCCCTTGACAATTGGATCAGGGGGGGGGGGTACATG
TTCAGTGTAGTGACCCATGGCCGGTGGGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCCCCTTGGAATGAA
CGCCCTCTCTAGTGGAGGGGCGTTTATTAGAAACTTGTGACTTTCAATAC
AGATTTTAGTCATTTCTTGTAACCAGAGCAGTTTTTGATGCAATTTTAAT
CGTTGAACCAAAGAAGTTTTGCACTAAAATTCTGATAAAGAACTAAAACA
AAGAAAGGGCATAGTTGCTATAAATATTAGACTTTAAACTAAAATAATTA
AAAAAACGCCCCCTTCTTTTAAACGCCCCTCTTAAATATTAAATAAACAA
CCCGGGCGTTTATTCGAAGTAATACGGTAAATAGGTTCAAGGAGCCAGCG
AAAGCTTTTCTATCCCAAAATTTTAGAAAAAAATCATGGTTAGTATCAAT
GACTGTATTTGTTATTGCTTATCAGTACTTTTTCAAAAGAACCAGAAATG
GTGGTTAGTTTCCTGCAGCGTATTAAAAGGGTGGTATGAGGATTGAAATG
GGTGGTGCTAGCTACTACAGGTTACTGAAAGGGTGGTATAGGGATTTATA
TGGGCGGTGATATCTACTACAAGTTACTAAAGGGTGGTATAAGGATTCGA
ATTGGTGGTAATAGCTACTACATGGTAGTAAAAGGGGTGGTCCCCTAAAA
AAAATCCCAGAAAAAACTAGTACCATGTACTAAAAAAGGGTGGTGGTCCC
AAATTTTTTAAAAATTACCGAAAATCAGGTTATTACCCCATGGGTTACTA
CACTGAACATGTACCCCCCCCTGATTGGATACAGCTCGAGTGAAAACGTG
TTAACAAATCGTGAGGGGTTCAGCATTCTAGTTTCAATTATTGATTAAAA
TATTCTTACTAATCTTTAGGTCTTTGATACAAGTGATATAACGAGGCGAG
TAGAAGATTTGGAATCTCAACTTCAGGTTAGAATATTTAACCGTCGAATG
TCATGGATCGTATTGAAACAGCAGGGGCCGCGGCTCCACTTTGAAAGTAA
TTGGGTCGTGATATACTGACTAAGGAGGCGCCACCATGAACAAAAAAAAA
TTTAATTGTAAAAAGGTGAAAATGAAAAAAACCCGCGGAAAAAGTTTGTT
ACGGTGAAAGGTTTCAGGCTGTAAAATAGAGTTTTTATAACTAGACTCTT
ATGCGTCAGAATTCGGATCAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00043520TCONS_00043520Clytia hemisphaericatranscript
TCONS_00043519TCONS_00043519Clytia hemisphaericatranscript
TCONS_00043518TCONS_00043518Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00043518-proteinTCONS_00043518-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004311supercontigsc0004311:3303..6673 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.77	7.98	5.87	5.24	21.9	15.47	15.11	16.34	10.67	8.65	11.45	10.04	8.28	8.24	8.64	7	7.81	10.11	3.75	5.53	6.5	7.48	7.89	6.87	13.28	16.26	6.44	5.93	7.22	7.14