XLOC_016419 (gene) - C. hemisphaerica

Overview
NameXLOC_016419
Unique NameXLOC_016419
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000715:141862..145967+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_016419 ID=XLOC_016419|Name=XLOC_016419|organism=Clytia hemisphaerica|type=gene|length=4106bp|location=Sequence derived from alignment at sc0000715:141862..145967+ (Clytia hemisphaerica)
cGAATGCCAAACTTAAGTTGAGCATCAAACGATTGGAAAAAAGGATTAAA
ACGTTGGTGAAAAGAGATGGTGTTTTTATCAAAGACCAGGCAACTTCAGA
ATTTATGCATAAAATGGTTGAATCTAAGCCTGATTTTGAATTTACAGATG
GCTCACCGATGAAGCTGCTTTGGGAACAGCAATTGAAAGCATCAAAGCTG
AAAAAATCAACGTCAATGAGATGGCATCCTGTTATGATACGTTGGGCTTT
GAGCCTATATCTACGAAGTCCAGGTATACATACGAAAATTTGTTATTTGG
TATTATATTTACTGATATAATATTTTAAATCACAATTCGGAGCAATTTTA
TAAATCTGATGCAATTTGATATGTCACTGACCCAGTGTTGGTCTGCTTCT
TTTTAAAAGGGGCTTATCTCCTCTACCATCAAAAGTTCTAAATAAAGTCA
AGATTTCTCATCCTTTTAGGgccaaaattatgaaaaattggatttgaaat
gaaaaaaattgaataagtttggaacaTTTGACAGTTTTGTCAAATCTGCT
AAAATTAGTACAAAAAAGGTAGAATATCTAGCAGTTTGTTTGTGTCCATG
TACTTCTTTGTCCCTAATTGTAGGGGGGGGGTCACTTggcaatttttcag
atttttcactcCCACTCACCACACactcttcttttttataagaaccatga
aATTTGAGTTGAGGCTGAAGCTGTTCTTAAAACCTTTAGCACTTTCAGCc
ttctgttcttatttttttaggtattttaggTTATATTTTCTATCTTTCTG
TATTTGTGACCCTGCCCCATTTTGTGGATTTTTTCCCAGAACTCTCAAAG
TCAGTTTCTCATTTTTATACGaccatttcaaattttatggTGTTTACGAT
TTTTCAATTATTATACCCCTGACTATCCAGATGCCTTGGGTGAggggaaa
aaaaattgttaaccATATTTTATATTTATGATGCTGCAGTAATATGATTT
TAGGAATTCTTTAAGAAGGAAAATTCTATGGCATGGGCAACTAATACTAA
TAGTCTTGGAGCACTCGAGAAAAATTACCCAAATTTCCCCCTCCAGATCT
ACAAGTAGGGTTAGATACCAGACCAAACCAGGCAAATAATTTaatcattt
tacttttttcaggTACATACGAACAACTACGAAGTAGTGGATTCTTGCAA
CTACCATGTAAATCTACTTTGAATCTGTATACTGGTTTTACTGATATCAG
ATCGTCCTACAACCCAGATATCATTCGTAAACATGCAACTGATTTAAAGG
TTTCAGAACTTAAACCTTTCGAACGAAGCTGTGGAATCTTATTTGAcgaa
atgaaaatcaaatcaGGTCTTGTTTTCAGTCGAAATACTGGACAACTGGT
TGGATTCACAGAGCTTGGTCAGATTAGTGAAGAGATATCTGTTTTGGAGA
GAAGTTTGGATGGTGCTCTAAAAGAAAAACCCCTAGCAACACACATGCTT
TGCATCATGATCAGAGGTTACTTTAAGCATTTCAACCTGCCAATAGGTCT
TTACCCAACTAACAGTGTTGATTCTGAACAGCTTTTCACAATTATCTGGG
AGGCAGTGCATGTAACCGAAGCTATTGGCTTGAAAGTCCACTCCTTTGTC
AGTGATGGTGCTTCAGCCAATCGAAAGTTTTACGAGATGCATAAGATGGA
TGATGGGTCAAACGTTTCGAAAGAAGGTCTCGTGTACTGGGCCTGGAACA
GATACGATCTCGGCAGGAAGATATATTTCTTCAGTGACCCTCCACATCTT
CTCAAAACACTGAGAAATAATCTTGAGAATTCAGGTGGTAACAAAGGAAC
AAGAAATCTTATGGTAAGTGAAAGCTCAATCTGCCAAGCTGGCCTGAAGA
TTATAATACTGGTCTTGTCAAGATTATGACAAATTTTGATccatgaaagt
tttttttggtgcaattgattttatttttcaaataaaattttttcctaatt
ttgaaAACCTcttcattgaaattttttgataattttttcattaaatctAC
TCAtgattatctttccaatgaaTATTAAATCACAatcaaaaattcagaaa
tataAACCctcttcatttttgaaattttttagtatttttttttgcatata
aTAATCCACTCacgattatctttccaacaagtattaaatcaattcaaatt
atattaaaagttacagccttttctGTTTCCACTATCAGTTATTTTGAGAC
ATACTTCAGTTTTGATATAATATGTTTCTTTATAGAAGATCAAGAAGATC
TCAAGATGAGTTATTGTATTTTGCATTTCAGGTCAATGGTCAGCATTTAT
CATGGAATCAGATTCGTTTTGTCTATGAGCTTGATCTTAATAAGAATTCC
CTGTCACCTGGATTGCGGAAACTACCACGATTAACTAATGATCACATTCG
ACTTGGTCCTCGAACACGCATGAGAGTTAATCTTGCTGCTCAGGTGCCTA
TTTTCTACTACATTTATTTTTAAGTTTGCACATTTCGCCATTTTCAgaga
aagattttgaattttatattttgaaaattatgatgtccaaaaaattgcaa
aaataaatttgctgAAAAGTTTTGCACTGACCTCCCCTCCTTGTTGGACC
CTTTATTCTGGTcttattttagtttttagttaATGTTCTTTCAATAATTA
TAATTGTGAGCTTTGTAATTTATTATTGAAGCTTCTTTTTATGTTCTCTT
TTCAGGTACTCAGCACCAGCATGGCAAATGCTTTAAAGAAACAAGGATTT
AGCACCACTAAGGAGCTTGAAAAATTCATCAGAATGATTGATAAATTCTT
TGACATCATGAATGTTCAAGATACTTATTCAGGCACGTCTACCAACAAAC
CATGGCTTATCGAATTTAGACTTGATGAAATTGAAATAGACGAAACTATC
ACACACAACACTCAGACTGATGCTACAGCTACAACACACAATCAAACTGC
TGCTACAGCCACAACACACAATCAGACTGATGTTACAGTCACAACACACA
ATCGGGCTGCTTCAGTCATAACGCACGATCAGACTACTGCTACAATCACA
ACACACAATCAGACTGCTGCTACAGTCACAACACACGATCAGACTGCTGC
TTCAGTCACAACACACAGTCAGACTACTGCTACAATCACAACACACAATC
AGAATGCTGCTACAGTCACAGCAAACAACACTCAGACTGTTGCTACATCC
AATCAGACTGCTGACGATAAAGCTAAAAAGGAGAACAGATTGAAGGTTTG
TTTAAATTTGATTATCGtaagttttacaaaaatttcctTATAAACGTCAC
TTTTTGTTGTTCGTTTCATTAAATTGGCTACCACTTCTCAGTTAAATCAG
ATCGAACTTAGATATGTGATAAACTGTATTGattatgaaattgaaaaaac
aacaaatgttTGGATGACTAAAgttttgataccattttctTATTTAGTGG
CTCGAAGACGTTTTCTTGAAGTATTTCGAAGACTgggaaaaagaaacaaa
agcctTGCCGTTTCCACCAAAGGAACAAGCAAAACATTGTATCAGTACAC
AGACACTCAATGGATTAAGAATAACAGGTATATTTTCAATGTCTAACTCA
TAATTCTTCCATATGGGTCTTAATTTTCACCCACCTATCCTTTTTTCTGA
TTAATTTCTGTTAATACAGAGTTCAATGCATTACTCTCAGACATGTTATA
TCAGATGTAATCTTGGGTCAAAAGTCTTCTAGGGTCTATTTATGTTGTAA
CATCTTgtgatattattttttcagttCGTTCATTCGTTGAGTTAGTTCCA
TTGCTACTACGTATGGATGGTGTCGAATATTTCCTGTCCGATAAGATCAA
TCAGGACCCCGTTGAAGAACATTTCTCCAAGCACAGGGCTCGACTAGGTG
GATCAGACAACCCAACTGTGGAACAGTACATGttaacagaacgaaaattg
gtgGTTGCGAAATCAGAACTCATACTTTCGTTAAGAGGTAATTTTCGTGG
TAGAAAACGAAAGCAGATAACCATAGATATCAACGATGAAAGAACTCTTc
ctaaaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00028910TCONS_00028910Clytia hemisphaericatranscript
TCONS_00028911TCONS_00028911Clytia hemisphaericatranscript
TCONS_00028912TCONS_00028912Clytia hemisphaericatranscript
TCONS_00028913TCONS_00028913Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00028912-proteinTCONS_00028912-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000715supercontigsc0000715:141862..145967 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.63	0.93	0.34	0.23	0.81	0.63	0.99	1.13	0.49	0.6	0.86	0.91	0.54	0.12	0.61	0.66	0.37	0.42	0.1	0.43	0.4	0.43	0.41	0.3	0.89	0.66	0.9	0.51	0.3	0.17