TCONS_00014487 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00014487
Unique Name	TCONS_00014487
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2186

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000188:169523..176484+

transcript sequence

>TCONS_00014487 ID=TCONS_00014487|Name=TCONS_00014487|organism=Clytia hemisphaerica|type=transcript|length=2186bp
CCATGAGAGAAGAGTTGAAGTGAAGAGATTTGTTTTTGTGATGAAGGTTT
CATGAGAAGGCTTTCACATGGCTTTATTTGACGAAATCAGTTTGTTGCAA
GAAgttgaaaaacttttgaaagaaatccGTGCAGAAATCAAGTATGCAGA
GAATGTGCATTACCACAGATCTTTCTCTAGCACAAGcacaattcaaaaat
tcaacGATGATGTTTCGGTAGAAAATAAAAGCAACAAGTCTGTCCACTCC
ATTTCCAATGATAGTGATGAAGttttccTGGATAACGCAAATGAGCAGCA
TTTGGAACAAAAGCCACTGAAAGAGAATCCCGTCAAAGAATGGGGCGATT
CGTTCGATAATCTGGTGAATGATATAATTGGCATGGAATATTTCACGGAA
TTTCTGAAGAAAGAATTCAGTGAAGAAAACATACAATTCTGGAAAGCTTG
TAACCATTTCAAGACATTCAACTTTCAATGTCAAGCCCAAATGGTAGAAA
GTGCACGATCGATATACACTACTTTCCTATCTCGCGATGCACCAAGTCTG
GTCAATGTGAATCAAAGTGTAGTGGAGAATTTGGAGAAATACTTGGATGA
ACCAAAGAGAAGCATGTTTGACCAGCCTCAAGAGCAGGTCTTTCAACTGA
TGAAATTCGACAGCTACAAACGGTTCTTGAAGTCGGACAAGTACAAAGAG
TTGTTGGAGCAGGAGAAAAACAAGATAGCATGGAAAGACTACAACGTGAA
GGACCGCAACCAATTCAATATTTTCAGCAAAGATAAACAATTTGTCAAGT
CGAATGCTTTGGATGATTGTTTCGATGCACAAAAACCGCAGTTATGGGAT
GGACTGCACGGCAAAAATAAATTCTTACGCGTCATTTTCCCCGATGGAAC
GTCGACCATCATTTCAGCGGAAGAAGGCTCCACATTGAAAGATTGTTTGG
GTGATCTTTGCCGTTCGAAGAAGATTTTATTGTCGTCTTATGATGTTACT
GTTGGTTGCCCTAGAAAGGTTGTTGGACTAGATGAAGAAGTATCTTGctt
gaaagaaaatgtcatcTTCTTTGAGAAACGAACGTTATTCAGGTTTGAGC
TACCGAATGGACGATCTGTCGGCATCAAATCTAACCTAACCAAATCATGC
TTCCAAGTTCTCGAACCCATTATGAAGAAAAATGGTTTTGATATCAATGA
ATATTCCTTCCATTTTTTTGGTGAAAAATCATCGATACCACTCGACTCTA
AAGTGTCCGTCGCTGATGGTAAACGGTTGCAAGCAAGGAAGATTTATAAG
AAAACAGAAAAAGAAGTGCCGGAGGGAACGGTCAACAAAACATTCGACTC
GCGAGCATCACTTCGACGTTTCCGTTCCAGTAGTTTGAACAGAGATGAGA
GAAACCAGCAAGTAACGCGAACCATCGGTAATGAAGTCAAACAGATGTTT
ACCAGCAAGGGAAAACAAGCAGAGAAAGATGCTTTTGcCTTGATGGAAGC
ATTGCAACGTTCAAACGATGACAGATTTGACGATCAGCGAGGCTTACTTC
CAGCTGATTTAAAACTTCCAGAATTTCTTAAAGGTCCTCCAGACAAAGGA
AATCAGATCTCAGTCGATAAAGAGGAATCCACCGGTTGAAACCGTGAATG
AATCGGATTCGAAAGCTGTGCATAAATGTAGATAGTCGAGAAAACTTTGT
AAATCTTCGTGACGCTCATTTCtactaataaaaaaaatgtaaactaTTTT
CTAAAGATTATTTTTTCTATATGCATTTTCAATGATTGGAAGTTTCTTAA
TGAATGGTGTGgattttttagaatttcttCACTTACGTGTACATATTGTA
AAGTCAAATTTTTACTACAAATTTACTTTTATCTTATCagcgacttttta
ttttaaaatgacCTGAATCAAGGACCACTGTCAAATGTAGATATAGAATG
GTTTTTTAGGGGTTTATTCTTTAGCTAAAGCACTGTATTTCACAAGGgca
attgttttattttttatacaatGTATTATATATTTTAGTCAGGGTCTTTT
TAAAATACGACTATACCTTACTATAATGGAATAATTATGTTCCAATCGAG
AattaaagtagaaaattttcttttggatAATGCTTGACTAACAAAGTTCC
CTCTTACGATTCAGCTAAAGGTAGATCGTCGATGTT

Run BLAST on NCBI

transcript from alignment at sc0000188:169523..176484+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00014487 ID=TCONS_00014487|Name=TCONS_00014487|organism=Clytia hemisphaerica|type=transcript|length=6962bp|location=Sequence derived from alignment at sc0000188:169523..176484+ (Clytia hemisphaerica)
CCATGAGAGAAGAGTTGAAGTGAAGAGATTTGTTTTTGTGATGAAGGTTT
CATGAGAAGGCTTTCACATGGCTTTATTTGACGAAATCAGTTTGTTGCAA
GAAgttgaaaaacttttgaaagaaatccGTGCAGAAATCAAGTATGCAGA
GAATGTGCATTACCACAGATCTTTCTCTAGCACAAGcacaattcaaaaat
tcaacGATGATGTTTCGGTAGAAAATAAAAGCAACAAGTCTGTCCACTCC
ATTTCCAATGATAGTGATGAAGGTGCTTATTTTTTCGCACAAACTTTCTA
AAATAGTCGGGTCTTGTATTCTGTTGaatattgatttatttattATCTTG
TGTTGTTTTGTGACCCCGGCTAGCTGTTTAACGTCATAAAACGCTATTTA
ATTGAATAAAAGCAGGTTTTTGAACCTGTCAACCGAGGGGGAGGTAATCA
TTTGAGGGGGGGATATGAATTGAAACTTTTATAATTACTTTCATCAAAAT
TGTAAAGTATAAATTgtattttgtttagttttccTGGATAACGCAAATGA
GCAGCATTTGGAACAAAAGCCACTGAAAGAGAATCCCGTCAAAGAATGGG
GCGATTCGTTCGATAATCTGGTGAATGATATAATTGGCATGGAATATTTC
ACGGTATATATAtgcagcacctgaccccgagaatgtagtaatgTAGAATg
caggtttctcatttttttaatattgtaGCTAATCtaatagttcaacttca
taaaaagttgtttcagagtATACTGTTACATCTTACTGATTATTTCTGga
caaaattttaacttgaattaatttttaccaacgaaaatctgaatggaagt
tgattggatactacccgaattgagacatttttcaaataatagaatttcta
tcccaatttggacttaagtagaaatttttgaacccgcgttgttacattat
tcacatatttcaacacaaaatttttttcaacctacaaaattaaaacaact
ttcttgtctcttttTTTGTCCTTTcttaaaagaaaggaaaagtaAAATTA
CTTTTCCTtatttgtagcacgataaaattaatatctttgttaattttgtG
TCAGAGTATACAGGTATACGGACCCCAAAAACCATGGTACCCCAAAAGCA
GCTgtatttctaaagtatgaatttcaccgaaaTTCGTGAAATTCCATTCt
caacaaccgaatcttttcacctacattctgggggttaaaaagtgaaaaaa
cccTATTTTCAGAATAACACAATGCTCGATTTAGAGTATtgttttggcat
aaaatatttctaaaatttgctgttagAGTTAAAATCCAAttggaaaaata
tcaacattttactattactagatatAAAGCCATAAAACTGGGcgctataa
cgaaaatgggagtcaacttcaaagaccaaaaaaattggcctatctatcaa
aagtaattaaACTAACCCCTGgaaaaggattttgggagttaaaaatttcg
ttgaaaacattcaaaatcttttaaaatgcaaatctacatctttcaggtct
gattcaaatttcacctacattctcggggtcaggtgctgtactcTCTCCTT
CTTTTGCACTAGCCGTCTATACTTTAGTGACATTTATTGCATTTGTTTGA
ATACAATAATAAGTTTATGTCATCTTcagagtttttttttcagtgtcATG
AAAACGATGAAAGGAAATTACACTgaaagctttatttttcttttctctct
gtgtatttatctttttattttgtttttattgtactTTTCTCACAAAGTAA
CATTCGAATGAAATCACAACACGTTCGATGAAAGAACGctgtaaaaaata
ttaaaaactcaattttgaagaaattggcGCCTCTTCGAGAGTGTttttaa
cgattaattgctctctaaaGGGTGCaatttgtatatgtaatcacatgata
acgagtgcaatttgaaaataattgcacgagtgatttttgttgttgttaat
TCTCACAAAATTAATTATAAACGTTCGATGAAAAAGGATGCAATcgacga
ttaattgctctctttgaaggtgcgccaaattagaaaaaataactcatcgt
gcgattaacaAAACTTAAACTGTTTCAATAAAAGACCAATGGGCTCTCTG
TCTTCAAATTCTACATTCATTAAATTGGGAGAACATCACTGTATGAAGGG
ATGCTTTGTAGTATAGTTTGTAGTATTCATTTTCCTAATTGTATTGTATT
ATCTTGTTTCATGTATTCAACTCACTCACTCATTTCTGTTCACATAATAC
AGGAATTTCTGAAGAAAGAATTCAGTGAAGAAAACATACAATTCTGGAAA
GCTTGTAACCATTTCAAGACATTCAACTTTCAATGTCAAGCCCAAGTAAT
TTACTTTTCATAATAACCTTTAATTCAAAGTTTGCAATTTTTACCAAGAG
AGAAATGCACTTCTAAATCTGTACAATGCTTTCagatttttggcaatttt
cctCTACTTGCCCTACAGCTTGAATTCAAATGACCTTATCTTTGTACTAG
ATGGAAGATTAAAGCGGGATAATTGGTCAAGTTGTCAATTCTGAATATAT
ATATATGTCCTGGTCATTTGCTCATTTATACTTTGTCTCTATTTATAGAT
GGTAGAAAGTGCACGATCGATATACACTACTTTCCTATCTCGCGATGCAC
CAAGTCTGGTCAATGTGAATCAAAGTGTAGTGGAGAATTTGGAGAAATAC
TTGGATGAACCAAAGAGAAGCATGTTTGACCAGCCTCAAGAGCAGGTTCG
ATACATTATTTTTCTCTCAACAGTTTGACTAATTTGATTTGATCCTAAAG
AGCATGATTCAGTCCTTAGAAAGTGAGGATCCATTGTAATCCATCCTCAA
CGGTAAGAAATTGAAAGACTCTTTACTGACACTAGAAAAAAAGACACCGC
GATGTATGGTGCAAGTTATAAGTCTATGAATTTGTTTTGCACTCCAGGTC
TTTCAACTGATGAAATTCGACAGCTACAAACGGTTCTTGAAGTCGGACAA
GTACAAAGAGTTGTTGGAGCAGGAGAAAAACAAGGTAAGTGAGACACAGC
TAAATATCGCTTATGTAGGAGCTTACAATATATTTAGGAAAAGAGATACA
CCGAAACCGGTTCGAACCACATAAGTCATTTGTCAGTGATTATTATTGGT
ATCCATAATTCTGCATATTTGATGtacaaaataaattattaaaaagttGA
TCTTATACTTCTATACGGCACAGGTGtgtcttttattttaaattcttttt
ataagaaaacttcatctaagaatatcatgaattttctATAAAAGTGCAAT
CCATTTAAAAACATAGATAAAAAGATTGAAGCGATTTTACTAGTTTCCTA
TAAAGGATGTAACCCTTGTTGTCGAAATATAGGCCTTTATTAAACAGGTA
CTCTGATAAAATAATTGTTTCAGGAGTTTTTAATTGCAATGCATCGTATC
ACATTGAGATAGAGTACTATATCCGGTAATGTTATTCCAGAATAATACTT
TTAGCAACGGGCGCATCATATCCTTGGCTATTAGCTAGTTAAGCAGATAA
GTTTTATCTAAAATTCAGAAGCAAAAAGTGCCAACCAAAGTAAACCAAAG
ATTATCACAAATTATAATACCAAATGGTAGGTAGCAACAAAAAGAATGTA
CACAAGAGACATATCATCTTCTATCATTTCGAATTTAATTTCTTTACTTT
CTGCAGATAGCATGGAAAGACTACAACGTGAAGGACCGCAACCAATTCAA
TATTTTCAGCAAAGGTGAGTTTTCATCACAGTCTCAACGTCCTGTCCAAT
GAAATGTTTCATACAACAACAAAGTATCAAAATTATCCTCTACCTGCCTT
TATGTGTTCTTTCAGATAAACAATTTGTCAAGTCGAATGCTTTGGATGAT
TGTTTCGATGCACAAAAACCGCAGGTAGACGATAtgttttttacatattt
ttatgTTGTATGTATGCTTTTGATTGCTCACATCTCACTTCTTTTGAATT
GGgcaaaccaaataaaaactaTACTTTAAACCATACCCTATGAGCAAACC
ATGAATATAGCAGCTCATTCGGCTCCTTTTCACGTTGTACTTTTTTTCAA
CCACGTGATGTCTGCTGCTATGTTTTATCGAGCACCCTTTACAATTTTGC
TATTAGTTATGGGATGGACTGCACGGCAAAAATAAATTCTTACGCGTCAT
TTTCCCCGATGGAACGTCGACCATCATTTCAGCGGAAGAAGGCTCCACAT
TGAAAGATTGTTTGGGTGATCTTTGCCGTTCGAAGAAGATTTTATTGTCG
TCTTATGATGTTACTGTTGGTTGCCCTAGAAAGGTACCTTTTCTTGCAAT
ATCTTTGTACGCCTGTTTATTGCGTTACTCAGAATTATTGTATCTTTTAT
AATCACACGTTGAAATGTACGAAGCGATGTAGTTAGAAAGATGATATCGA
GAATACCACTACTAGACAGTCAACTTTCTCGTTACTTTCCTCACCTTTTT
TCATTTTACTTTCCAGGTTGTTGGACTAGATGAAGAAGTATCTTGcttga
aagaaaatgtcatcTTCTTTGAGAAACGAACGTTATTCAGGTAAATTTCT
TACTCACTATTGAAAATAAGTCATTCATAATGTTCTGAATTTGGATCAAC
TCCCCAAGTGGATAATTTAGATAAAAAAGGTGACGActagaaatttcttt
tttgcagCCATTAAGAACAGAATAGAATACGGAAAGGCTTGGTGGGCGAA
TTACCGCCTTATCTCTTCATACTCTATTTTATCAAAGTTGTTTCTactgt
gattttttattttaagaaggAGGATAGTTACAAAAGATGGATAGATAAAT
AGATGTTTTGATGATCTACATTTCGTTGTTTAGGTTTGAGCTACCGAATG
GACGATCTGTCGGCATCAAATCTAACCTAACCAAATCATGCTTCCAAGTT
CTCGAACCCATTATGAAGAAAAATGGTTTTGATATCAATGAATATTCCTT
CCATTTTGTGAGTAGGCCGTTTATTCCTTCCGTCTCAATTTGTAATTTTA
ACCCGTTTAACGGTGAAGTTCCTTGGTAGATCGTGAATACTAATGGAACC
TTTTGGTTCATTTATAGTTTGGTGAAAAATCATCGATACCACTCGACTCT
AAAGTGTCCGTCGCTGATGGTAAACGGTTGCAAGCAAGGAAGATTTATAA
GAAAACAGGTACATGTCTTGAAAAAGAAGGCACCGTCGTTTTGAAATGAT
TCCACtttctgcactaagattctACTGACTTTTTCCGGGAATTTTCCTCT
ATTTTTTCTGGGATAACTGTTTAAAGGTAAGGAAAATCTAACTTTCCGAA
ACTCATTTTTCAATCCCCGGAGTTCTGATCTTTTTCTGCTAGAAAAGTGA
CAGTGGAATTTTAGTGGGAGCAGTTGAATCTTGTGCAAAACGACGGTTTA
ATCTTTTGCGATATGTTTTCAATGAAGTTAGGCTGTAGCTATTATCTTTT
CAAGGTGTATTGTTTAAGAGAATAGAGACAATAAAACATTGCAAGAAGGA
ATTACCACACATTTATCATAAATAACCTTGAAGTTTCCATGACAACACCA
ACATTCTTTTGTAAATATACTTCTTTGTTTTTGTGCTTTCAGAAAAAGAA
GTGCCGGAGGGAACGGTCAACAAAACATTCGACTCGCGAGCATCACTTCG
ACGTTTCCGTTCCAGTAGTTTGAACAGAGATGAGAGAAACCAGCAAGTAA
CGCGAACCATCGGTAATGAAGTCAAACAGATGTTTACCAGCAAGGGAAAA
CAAGCAGAGAAAGATGCTTTTGGTAAGGAATCATTCCCAAGAAAGTGTTC
TCAAGATGCCAAAAGTTTGACGAGAAAGCGCCGAAACACTGTTTTCTTAT
AATCATCCCGAAAGTCTCGATCACAATTTTTTTAGCTAGCGCCCCTGAAT
CTGAAACAATTTACAttaattttttggaaagtttatcatcttctaaattg
attttttaagattttcagcTTTTCAGATCAGGAATTTTGTGCAAAACATG
AAAATCTTAATGTGTCATTCTTTTGTTAACTACCTGATTAGTTAGAGTtg
ggaaaaaaatagaaaatataaatagaaaatataatagccgcattcttttt
caccgttcaaaaCACATAATTAGTTCGAGCTGttaacattttaaattttg
aattttattttagcCTTGATGGAAGCATTGCAACGTTCAAACGATGACAG
ATTTGACGATCAGCGAGGCTTACTTCCAGCTGATTTAAAACTTCCAGAAT
TTCTTAAAGGTCCTCCAGACAAAGGAAATCAGATCTCAGTCGATAAAGAG
GAATCCACCGGTTGAAACCGTGAATGAATCGGATTCGAAAGCTGTGCATA
AATGTAGATAGTCGAGAAAACTTTGTAAATCTTCGTGACGCTCATTTCta
ctaataaaaaaaatgtaaactaTTTTCTAAAGATTATTTTTTCTATATGC
ATTTTCAATGATTGGAAGTTTCTTAATGAATGGTGTGgattttttagaat
ttcttCACTTACGTGTACATATTGTAAAGTCAAATTTTTACTACAAATTT
ACTTTTATCTTATCagcgactttttattttaaaatgacCTGAATCAAGGA
CCACTGTCAAATGTAGATATAGAATGGTTTTTTAGGGGTTTATTCTTTAG
CTAAAGCACTGTATTTCACAAGGgcaattgttttattttttatacaatGT
ATTATATATTTTAGTCAGGGTCTTTTTAAAATACGACTATACCTTACTAT
AATGGAATAATTATGTTCCAATCGAGAattaaagtagaaaattttctttt
ggatAATGCTTGACTAACAAAGTTCCCTCTTACGATTCAGCTAAAGGTAG
ATCGTCGATGTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008103	XLOC_008103	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000188	supercontig	sc0000188:169523..176484 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.137245	0.25745	0.152524	0.157977	0.552106	0.395077	1.05032	1.539	0.22155	0.591471	1.12944	1.35096	4.44915	2.96006	2.94666	3.98077	3.91049	2.91687	0	0.76953	3.55133	2.46462	1.23489	1.88307	1.67655	1.91173	0.805902	0.000198026	0	0

Blast

[Close]

BLAST of TCONS_00014487 vs. Swiss-Prot (Human)
Match: RGS14 (Regulator of G-protein signaling 14 OS=Homo sapiens GN=RGS14 PE=1 SV=4)

HSP 1 Score: 133.65 bits (335), Expect = 1.161e-32
Identity = 74/181 (40.88%), Postives = 98/181 (54.14%), Query Frame = 2

Query:  173 FSSTSTIQKFNDDVSVENKSNKSVHSISNDSDEVFLDNANEQHLEQKPLKENPVKEWGDSFDNLVNDIIGMEYFTEFLKKEFSEENIQFWKACNHFKTFNFQCQAQMVESARSIYTTFLSRDAPSLVNVNQSVVENLEKYLDEPKRSMFDQPQEQVFQLMKFDSYKRFLKSDKYKELLEQE 715
             SST+  Q   +       S+ S+HS+ +     F            P +E PV  W  SF+ L+ D +G+ YFTEFLKKEFS EN+ FWKAC  F+        Q+ + AR+IY  FLS  A S VN+++      E+ L EP+  MF   Q Q+F LMKFDSY RF+KS  Y+E L  E
Sbjct:   24 LSSTTGPQGQGEG----RGSSLSIHSLPSGPSSPF------------PTEEQPVASWALSFERLLQDPLGLAYFTEFLKKEFSAENVTFWKACERFQQIPASDTQQLAQEARNIYQEFLSSQALSPVNIDRQAWLG-EEVLAEPRPDMFRAQQLQIFNLMKFDSYARFVKSPLYRECLLAE 187

The following BLAST results are available for this feature:

BLAST of TCONS_00014487 vs. Swiss-Prot (Human)

BLAST of TCONS_00014487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RGS14	1.161e-32	40.88	Regulator of G-protein signaling 14 OS=Homo sapien...	[more]

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TCONS_00014487 (transcript) - C. hemisphaerica