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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014490 ID=TCONS_00014490|Name=TCONS_00014490|organism=Clytia hemisphaerica|type=transcript|length=1197bp
TATAAGTACAAGTCATTTGCgatgcaataaaaaatataattgtcCTACGT
TAagttctttttgtattttgaatgttttgttaaaagtaattaaatcaaat
taaattagGGTGCAGTTCACCCTACAGCTAGTGGCTTAACGATTGAATTT
GAAAACAACAAAGaacatttcaatattttgccaatCATGTGTGCAGATCT
TTGCTTTGTAAAGGAGGTTCTAGGCAAGTGTTCCTGCACCAGTCTATATG
GCTGCTTTTATTGTAAAAAACCGATTGCAGAATGGGATAAAAATGATGCA
CAGACAGAAGAACTACAAACAATGTCGCAAATATCACTGGATGGTCAAGA
AGCAGTTAGGGTACTTGGTGCGAATCCAAAGCATGACACAGCAGAATTTA
CAAAGTTTCAACAGAGTCATTTTGGGCAGTATGCACCGCTCCTATTGGAT
TGCTTTGAAATGATGCTTCTTGTTCCCTGTGGGTTGCACATGATTCTTGC
ACACCACAGATATTTGTGGAACTTCTTGTTTGATATCATTCAAGATAGAA
AACAACAAGATTTACTTCCCAAGGCTTTACGCAGCATAAATTGTCACTTT
TTGGCTCTTCAAATCGAATCATATTTCAAAAGGCAGGAAACCCTATCTGC
ACATATTGCGCGACCACATTGCGGACTTTATGAAATTCTGGTCTGTACTC
GGATTTGGTTATGGATGCTTTAACTGCAACGCTGGTGAGCATttaaacaa
gcaaataaaaacgATGGAGCTTAATAACACAAACTTGGACAAGGacagat
tttttacaatcaCACGACTTTTTCGTTGGAAACAATTTTACTATCCGGAA
AGTATATATCAGCCTAGCTGCAAAGTCCGTTGTTCAAGGTGCCAACAAAA
AGGtcacaacaaaaaaaacaagagcTGCCCAATGCATCCTGACCAGCCAA
TAATGCACTTTTCAGATTCTGATCCTGACGATTAAATTAACAAGACAATG
ATCCTGGgtttataccttaagggaaaaaattttcgcgggaagaaaatttc
gcggttttcacggtttttgcctaaaaccgcgaaattaagttcccgcgaaa
ctttctgaaatcgccaatccgcgaaattaaattcctgcgaaattttacaa
attcgatgaaccgcgaaattaaattactgctaaatttttcaaaaaag Run BLAST on NCBI protein sequence of TCONS_00014490-protein >TCONS_00014490-protein ID=TCONS_00014490-protein|Name=TCONS_00014490-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MCADLCFVKEVLGKCSCTSLYGCFYCKKPIAEWDKNDAQTEELQTMSQIS
LDGQEAVRVLGANPKHDTAEFTKFQQSHFGQYAPLLLDCFEMMLLVPCGL
HMILAHHRYLWNFLFDIIQDRKQQDLLPKALRSINCHFLALQIESYFKRQ
ETLSAHIARPHCGLYEILVCTRIWLWML Run BLAST on NCBI transcript from alignment at sc0000188:371553..373444+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014490 ID=TCONS_00014490|Name=TCONS_00014490|organism=Clytia hemisphaerica|type=transcript|length=1892bp|location=Sequence derived from alignment at sc0000188:371553..373444+ (Clytia hemisphaerica)
TATAAGTACAAGTCATTTGCgatgcaataaaaaatataattgtcCTACGT
TAagttctttttgtattttgaatgttttgttaaaagtaattaaatcaaat
taaattagGGTGCAGTTCACCCTACAGCTAGTGGCTTAACGATTGAATTT
GAAAACAACAAAGaacatttcaatattttgccaatCATGTGTGCAGATCT
TTGCTTTGTAAAGGAGGTTCTAGGCAAGTGTTCCTGCACCAGTCTATATG
GCTGCTTTTATTGTAAAAAACCGATTGCAGAATGGGATAAAAATGATGCA
CAGACAGAAGAACTACAAACAATGTCGCAAATATCACTGGATGGTCAAGA
AGCAGTTAGGGTACTTGGTGCGAATCCAAAGCATGACACAGCAGAATTTA
CAAAGTTTCAACAGAGTCATTTTGGGCAGTATGTAAGTAAACTTAACAGT
ATTATGAGTAAGAGAATCTAATTGATGTACTTTTAAAAATATGCAACCAA
GTTCAATATTACAGCATtttatttaaaactttaaattttacaCAAATGGA
AAAATATACTATACTGTGCAGGTGACAAATGTTGTCCCTTTCTTATGGAA
ATAACCCAAATGGTAGTGGTTTTTATTACCATttttattaagaatttttt
tttaatttttaaaatttacaattttttattaTAGGCACCGCTCCTATTGG
ATTGCTTTGAAATGATGCTTCTTGTTCCCTGTGGGTTGCACATGATTCTT
GCACACCACAGATATTTGTGGAACTTCTTGTTTGATATCATTCAAGATAG
AAAACAACAAGATTTACTTCCCAAGGCTTTACGCAGCATAAATTGTCACT
TTTTGGCTCTTCAAATCGAATCATATTTCAAAAGGTTAAGTTCTTTCTCA
TTatcttttaaattattttaatgttATTATAGTTCAGGGAGATTAAACGC
AGTGAGCCTTTCAAAGTAATTTCCCTGTAGGATCAACAGAGTTAGGAAAT
AGACTTGTCACagattttgaatttctattttcaGTAAAAAGAAGTACTAT
GACGGTAACTCATCTTTGAAAATGATTGGGAGAGACTGCAAAAACTTCGA
AGACAATATTGGAAAGTTTATTAGCTTTTTCATCAAAGAAAATGAGGCAT
TAAATGATAAGAGCTTTTCTAAAATGAGGCAAGTAATGAAGCTGTATGAG
TTATTCAGAGATTTGGCAAGAGATATCAGAGCAACAACAGTAGATTTGGA
ACGTATTGACACTTTCCAAGAAAGAGTTGAagtcttttttcaaacattca
aacGCTTTTCTCTTGGACGGTCAACAGGCAGGAAACCCTATCTGCACATA
TTGCGCGACCACATTGCGGACTTTATGAAATTCTGGTCTGTACTCGGATT
TGGTTATGGATGCTTTAACTGCAACGCTGGTGAGCATttaaacaagcaaa
taaaaacgATGGAGCTTAATAACACAAACTTGGACAAGGacagatttttt
acaatcaCACGACTTTTTCGTTGGAAACAATTTTACTATCCGGAAAGTAT
ATATCAGCCTAGCTGCAAAGTCCGTTGTTCAAGGTGCCAACAAAAAGGtc
acaacaaaaaaaacaagagcTGCCCAATGCATCCTGACCAGCCAATAATG
CACTTTTCAGATTCTGATCCTGACGATTAAATTAACAAGACAATGATCCT
GGgtttataccttaagggaaaaaattttcgcgggaagaaaatttcgcggt
tttcacggtttttgcctaaaaccgcgaaattaagttcccgcgaaactttc
tgaaatcgccaatccgcgaaattaaattcctgcgaaattttacaaattcg
atgaaccgcgaaattaaattactgctaaatttttcaaaaaag Coding sequence (CDS) from alignment at sc0000188:371553..373444+ >TCONS_00014490 ID=TCONS_00014490|Name=TCONS_00014490|organism=Clytia hemisphaerica|type=CDS|length=1611bp|location=Sequence derived from alignment at sc0000188:371553..373444+ (Clytia hemisphaerica)
ATGTGTGCAGATCTTTGCTTTGTAAAGGAGGTTCTAGGCAAGTGTTCCTG
CACCAGTCTATATGGCTGCTTTTATTGTAAAAAACCGATTGCAGAATGGG
ATAAAAATGATGCACAGACAGAAGAACTACAAACAATGTCGCAAATATCA
CTGGATGGTCAAGAAGCAGTTAGGGTACTTGGTGCGAATCCAAAGCATGA
CACAGCAGAATTTACAAAGTTTCAACAGAGTCATTTTGGGCAGTATGCAC
CGCTCCTATTGGATTGCTTTGAAATGATGCTTCTTGTTCCCTGTGGGTTG
CACATGATTCTTGCACACCACAGATATTTGTGGAACTTCTTGTTTGATAT
CATTCAAGATAGAAAACAACAAGATTTACTTCCCAAGGCTTTACGCAGCA
TAAATTGTCACTTTTTGGCTCTTCAAATCGAATCATATTTCAAAAGGCAG
GAAACCCTATCTGCACATATTGCGCGACCACATTGCGGACTTTATGAAAT
TCTGGTCTGTACTCGGATTTGGTTATGGATGCTTTAAATGTGTGCAGATC
TTTGCTTTGTAAAGGAGGTTCTAGGCAAGTGTTCCTGCACCAGTCTATAT
GGCTGCTTTTATTGTAAAAAACCGATTGCAGAATGGGATAAAAATGATGC
ACAGACAGAAGAACTACAAACAATGTCGCAAATATCACTGGATGGTCAAG
AAGCAGTTAGGGTACTTGGTGCGAATCCAAAGCATGACACAGCAGAATTT
ACAAAGTTTCAACAGAGTCATTTTGGGCAGTATGCACCGCTCCTATTGGA
TTGCTTTGAAATGATGCTTCTTGTTCCCTGTGGGTTGCACATGATTCTTG
CACACCACAGATATTTGTGGAACTTCTTGTTTGATATCATTCAAGATAGA
AAACAACAAGATTTACTTCCCAAGGCTTTACGCAGCATAAATTGTCACTT
TTTGGCTCTTCAAATCGAATCATATTTCAAAAGGCAGGAAACCCTATCTG
CACATATTGCGCGACCACATTGCGGACTTTATGAAATTCTGGTCTGTACT
CGGATTTGGTTATGGATGCTTTAAATGTGTGCAGATCTTTGCTTTGTAAA
GGAGGTTCTAGGCAAGTGTTCCTGCACCAGTCTATATGGCTGCTTTTATT
GTAAAAAACCGATTGCAGAATGGGATAAAAATGATGCACAGACAGAAGAA
CTACAAACAATGTCGCAAATATCACTGGATGGTCAAGAAGCAGTTAGGGT
ACTTGGTGCGAATCCAAAGCATGACACAGCAGAATTTACAAAGTTTCAAC
AGAGTCATTTTGGGCAGTATGCACCGCTCCTATTGGATTGCTTTGAAATG
ATGCTTCTTGTTCCCTGTGGGTTGCACATGATTCTTGCACACCACAGATA
TTTGTGGAACTTCTTGTTTGATATCATTCAAGATAGAAAACAACAAGATT
TACTTCCCAAGGCTTTACGCAGCATAAATTGTCACTTTTTGGCTCTTCAA
ATCGAATCATATTTCAAAAGGCAGGAAACCCTATCTGCACATATTGCGCG
ACCACATTGCGGACTTTATGAAATTCTGGTCTGTACTCGGATTTGGTTAT
GGATGCTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014490-exon-sc0000188-1491911889:371553..371984 | TCONS_00014490-exon-sc0000188-1491911889:371553..371984 | Clytia hemisphaerica | exon |
| TCONS_00014490-exon-sc0000188-1510915933:371553..371984 | TCONS_00014490-exon-sc0000188-1510915933:371553..371984 | Clytia hemisphaerica | exon |
| TCONS_00014490-exon-sc0000188-1575043694:371553..371984 | TCONS_00014490-exon-sc0000188-1575043694:371553..371984 | Clytia hemisphaerica | exon |
| TCONS_00014490-exon-sc0000188-1491911889:372237..372436 | TCONS_00014490-exon-sc0000188-1491911889:372237..372436 | Clytia hemisphaerica | exon |
| TCONS_00014490-exon-sc0000188-1510915933:372237..372436 | TCONS_00014490-exon-sc0000188-1510915933:372237..372436 | Clytia hemisphaerica | exon |
| TCONS_00014490-exon-sc0000188-1575043694:372237..372436 | TCONS_00014490-exon-sc0000188-1575043694:372237..372436 | Clytia hemisphaerica | exon |
| TCONS_00014490-exon-sc0000188-1491911889:372880..373444 | TCONS_00014490-exon-sc0000188-1491911889:372880..373444 | Clytia hemisphaerica | exon |
| TCONS_00014490-exon-sc0000188-1510915933:372880..373444 | TCONS_00014490-exon-sc0000188-1510915933:372880..373444 | Clytia hemisphaerica | exon |
| TCONS_00014490-exon-sc0000188-1575043694:372880..373444 | TCONS_00014490-exon-sc0000188-1575043694:372880..373444 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000188 | supercontig | sc0000188:371553..373444 + |
Blast
The following BLAST results are available for this feature:
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