TCONS_00015000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015000
Unique NameTCONS_00015000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length605

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015000 ID=TCONS_00015000|Name=TCONS_00015000|organism=Clytia hemisphaerica|type=transcript|length=605bp
TCTCTTTACCTTTTACACTGTTTACACCACCCTGGTACTTTACTTTTTAC
AGCTCTTGGAAAACTTTTAGAGATAATGTATAATTTAAATTTGCTGCACC
CACCAAGTCAGGTTTCGTGAACATTGATTGGTCAATAAACGATCgcgtaa
aaattgcaaaatcttttaaaacccAAAATTGCTGAAATATTGGTCAACAT
GACTTCAAATGTTGATAGGatcaatttgacattttttatggGTTTCTACC
ATGAAAAGTTATTCATGGTTGTTTTATATACCCCTTGGTCCTATATCAAA
CTCAAAATATATCCTGGTTTAAAAAGCGTTAACGGCAACAAAAGCAACAG
TCAAAGACTGATAGGGTCAAAATTGTCACCCTCAACTTCATTTTGGACCG
GCGTACTGTACAACCAGGACCCGGACCGGACCCTGGACCCTAAGAAAACT
CGGACCCCGGACCTTTACGAAAACCTGGACCCCTCgtaaatttttgagaa
acaCTACCCCCCtcaaattttcgagaaaacatGGAAACTTAGCTTCTTCC
CTCTAGCATATAATCCCAAGGAAATCTGTTCTCGCTAAATTATAGGATAG
TATAG
Run BLAST on NCBI

transcript from alignment at sc0000201:310905..311509

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015000 ID=TCONS_00015000|Name=TCONS_00015000|organism=Clytia hemisphaerica|type=transcript|length=605bp|location=Sequence derived from alignment at sc0000201:310905..311509 (Clytia hemisphaerica)
CTATACTATCCTATAATTTAGCGAGAACAGATTTCCTTGGGATTATATGC
TAGAGGGAAGAAGCTAAGTTTCCatgttttctcgaaaatttgaGGGGGGT
AGtgtttctcaaaaatttacGAGGGGTCCAGGTTTTCGTAAAGGTCCGGG
GTCCGAGTTTTCTTAGGGTCCAGGGTCCGGTCCGGGTCCTGGTTGTACAG
TACGCCGGTCCAAAATGAAGTTGAGGGTGACAATTTTGACCCTATCAGTC
TTTGACTGTTGCTTTTGTTGCCGTTAACGCTTTTTAAACCAGGATATATT
TTGAGTTTGATATAGGACCAAGGGGTATATAAAACAACCATGAATAACTT
TTCATGGTAGAAACccataaaaaatgtcaaattgatCCTATCAACATTTG
AAGTCATGTTGACCAATATTTCAGCAATTTTgggttttaaaagattttgc
aatttttacgcGATCGTTTATTGACCAATCAATGTTCACGAAACCTGACT
TGGTGGGTGCAGCAAATTTAAATTATACATTATCTCTAAAAGTTTTCCAA
GAGCTGTAAAAAGTAAAGTACCAGGGTGGTGTAAACAGTGTAAAAGGTAA
AGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008393XLOC_008393Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015000-exon-sc0000201-1491911889:310905..311509TCONS_00015000-exon-sc0000201-1491911889:310905..311509Clytia hemisphaericaexon
TCONS_00015000-exon-sc0000201-1510915933:310905..311509TCONS_00015000-exon-sc0000201-1510915933:310905..311509Clytia hemisphaericaexon
TCONS_00015000-exon-sc0000201-1575043694:310905..311509TCONS_00015000-exon-sc0000201-1575043694:310905..311509Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000201supercontigsc0000201:310905..311509 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.179181	0	0	0.396968	0	0.0954716	0.345547	0	0	0	0	0	0	0	0.152617	0.163781	0.13451	1.17188	0.190473	0	0.519726	0.126752	0.41089	0.560338	0.673324	0.772618	0	0	0	0.101312
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top