XLOC_037554 (gene) - C. hemisphaerica

Overview
NameXLOC_037554
Unique NameXLOC_037554
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_330:233195..242482+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_037554 ID=XLOC_037554|Name=XLOC_037554|organism=Clytia hemisphaerica|type=gene|length=9288bp|location=Sequence derived from alignment at scaffold_330:233195..242482+ (Clytia hemisphaerica)
AAATAGCAAATACATTCTTAAGTATTAGCTATGTGATTAGCCAGGAACTG
GAAGGTCCCAAGAGCGAGGATGTATCTCAGATCagaaaaaagatgttttt
ttcaATAAGTTTGTTAAAAGTGATGAATTTCTGAACGTACTAGTACTAAT
TTGTTTAACATAAGCAAACAAAAAGTTCGATCACAAAAGTATTTAACGTT
CTCGTGTTACAAAATGTATTTATTGCGGTTTTGAACTCGTAATTTTAAGT
GGAAACGTTTTATAAAGGGAGAAACAGATCTCATATTTTTGCAAGCTCAA
CGGGGCTTGAGTTGAGAGTTGAACAAGAAACAGTTTGTGTTTTAGGTAAG
TTGTGTTCATCATGTAGATTTCATTGAGTTGAATCATACCCcgttaggga
gtggtcagaaagtatctactagggtggggtggaggatattttcaagaatt
ccAAACACCCCCTCTCCCTGATATCCTCAAAAAACTTCAACCCCCTCCTA
ATATAGGCCACTTTAAATGACATGAGATTTTTTAGACCCTCCTAGAATCC
CCTTAATAGATACTTTCTGATGACTCCCTTATGCTTAACCTTTCAGAAAG
TCTGTGtgcttcattttcttcattaaACATTTAACTTTTACTGAAAGCCT
GAAACTGAATGTGCGTATTGGTGGTcttcaaattaatttatttaGATATA
AAAAATTACCTTGGGTTATGAAAATTGGTGCTCAAGTCGAACAaatacac
gtttgtttttttataagaacgtcaaaaattttcgaagccttcggatgttc
ttagttttttggatttgaatcctaaaaatgttcttaaaaggttcttattt
ttagcattttttgagcattttgatgtaatttcttaagaaaatgcatgttt
ttaagtctccaaagccttagaatgttcttagaatgttcttaaatttttgg
gcctcgaagccttatgttcttatatagtttgttcttataaaaaaaacgtg
tatgctcaATTTAAAGTCAGAATGTAAAATACTTAGTGCTATGCAATTGC
GAAAGTTTCAGATAATTTTAAGTCTTTGATTTCAAGCAAATTTGACTAAG
CTCTACAAATCTAAGGGTGGTCAGTTCTTACCATGTTTCCCTAAAAGTTC
TAGCATATATATATTCTTTTTGGCTGGTTTCTAAtgaaaaacatgtattt
tgtaATTCTAAGACTTTTCGAAAGACATTTTTCGGAGCCGGTAATCCACG
TTTAATATAATCCATCAAACAGTTTCTTCAATAGGGACTAGCCAATCACC
TGAATATCAAGATGTCATCCATAATCTCACTAAGAACGATCAGGCGTTTA
CAAAAGTATGTTCCACTACTTTCGAGATGTCATTCTTCATTATCTCCACA
ACATACCGATTACGCTTATCTGACGGAAGATAATATCGTCAAATCGACCA
TTCAGTTAGATCATCCGGTGGAGgatttgtttacgttttttagTAAAAAG
TTTCAGGAGTTTGGAGATGAGGTTGCCATGGTAAGAAACTATTCAATATG
AACAGAGTTTTTGAAAGTCTCTGTCATCATGTTTTCGAGAACGCTCGAGA
CCCTTTCATTTCGAGTCAATCTGGAAGGCTTCAAATTCAGCTTACACCCC
TGTACCAGTATGCTATTTGAAATTTGCTTCTCAAAGATTCAAATACGCAA
AAAATATACTGGTTTGAATTTACTAGAAAATTCTCTTGGCTACATTTGAA
GTCAGCTATTCTAGTCAAACATTTTGCCCCTTTTTTGGCTGCATTTCTTT
ACCTCGtttaataaaaattacttttccATTACCTTTCATTCAACGCCACT
TTCTAACCATAGATTGATGAAAACACTGGCAAATCAACAAGTTATCTTGA
TCTCATTGCAAATGGAAAGCGGTTATCCTCTTTCTTTGAGCAAAAAGGTT
ATCAAATCGGTGACCGACTAGCCATACATACGCCAAATTGTTTGGAGTAC
TCCTTCGCAACAATGGGTTCCCTTGCCAGTGGATTGACTTTAAACACAGT
AAATTCAGCCTATACAAATTTTGAGCTTAAGAATTTGTTGAACAGCTCTA
CGCCTCGTGCGTTGGTCACAAGCTCAGCACAACTAGAACAAGCCAGACGA
TGTATCGATGGGACAAACACAGATCTCTTAATTTGCGTGGATGACGTAGC
CTGCAATGACAGTGGAGTTTTCAATTTATCGGATATCTTGAATAACGGTG
ATGAGAATTTCAATAAAGATCTTTCAAAGTTGGATCCCAATAAGGAGACG
GCATTTCTGTTATATTCGAGTGGAACAACAGGTCTACCAAAGGGTGTTAT
GATCAGCCATCATGCTTTCTCTTCAAACATCATCCAGCTTACTGGTAAGA
AATGTTTCTGATTTGTGATCATTAATGACAACTGGGTACCTGATAGACAT
CACACTTCTTGGAGATTGGTTTAAAGGCATAGACAGatgatttgagatat
tttgcctgtaGATTCCTTCAATCGTTCTAAGCAGCACCTCCGGATGTCGA
ATGAATCTACTGAccgcaaaatatctcaaatgaCTATCTCATCTGATCAT
CCCTAAGTTTACCAAGGCGAATGACATTAAAATCTCCGTATTTGTGAGAG
CATtaattaaaaatgatttcagAAACTTTATGTCATTCGAACTTAGttct
ctttttttcttgttGCAGCGAAAAAAGTATATTCTGAGTTCTGCCTTTTT
TTGAATATCAGGACTTTTTAACATTCTTAaccaaaatgaagaaaaagctG
ACTTAAAAAAGATAATGATAGTTTCAGGGCCGGCGAAACCGGGGGGGGGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCGTCgttttaatttctttgattttttc
attccaataacttcataaaaattaaatttagatcACTTCTAAGCCAATGT
AGAGtaccataatttcaaaaattttccgttccgtcggccccaaccatggt
gggcctccttagtcactataatcatttagccccctcacttttaaaaccga
ttcgccggccctgcAGTTTTGTGTATATTATATTTCAGGTGCTTTGGAAG
GAATGCTCCCCAAGAAGACATTATGTTTTCTACCCATATATCACATCTAT
GGTTTGAATTATATTATGATGTTACATCTTTACAATCGGAGTCAACTTCA
CGTGGTACCGGGTTTTGATCCAGTTCAATTCCTATCCCTCATTCAAGAGA
AAAAGGTAACTTGAATAAAAccttttcacacaaaaattgaaaattctgaG
TTACATTTTTCGCCTTTCTTGTTCTAGGTCTAGGTGTTATACAAAGTTTT
TTTCAgtctttttcaagaaaaatgggaattgaaattgaaaaagtgaACTT
TATAATCTATAGGGTGCTAATGTACTATGATTAAATAGATACGAATATTG
CACCTAAAATTCAAGTTACAAtcaaaggtcataatatttgagaaaaaagg
gaaattcaccaggaagttttgaaacccacaatcgatttgtaagtgctcta
aagtaggttcgaagggtagggttttaactctgagttttaacgctagactt
aagacttaagactaaggaccttaggatctgagaatccgaaagttcaaaaa
tagtccaataaggctcagaatatagcctggaaatcTGCCAACGCTTccca
aatagaaatattcgattaaattaaagaaatagCCCAAAATCTTTCttgcc
ggaactttaaatcctgaaaaacGTTGAATTACcagaattctcaatatatt
tcaaccatgattggtTGTCAATTTTGAACTAGACTAGAAATTACTTTCAA
ATTAAAACTGACAAATAGATAAGAATTATTTTTCTCTCATAGATCGAGCG
TGTGTCCATTGTACCACCAGTGGCAGTGTTTCTGTTAAACCATCCTTTAG
TGGACCAGTATGATTTATCATCTCTCCGTTCCATTACCGTTGGAGCCGCT
CCTATCGATGAAATCGCCATCAATCAATTCAACACGAAATTCCCAAATGT
TATTCTACAGCAAGGTTTGTTCGtgtaattttcatgaaaaacttcagttt
cattttaaatataactcgaacacgcgcatggaacacaaatttgttcgtgT
TAATGAGATTTCAAGTAAGGTGTACAAGGCATTGTTAGCTGAAGGGATTa
caaaacttgttcgagttatagaggttcgagttaaggagactcaTCTGTAT
AGGATATTTTGGTACATTAAAGATGGCATTTGTCATACCTTTCTTACTCC
TCTTGTATAGGATATGGTATGACAGAAACGAACATTACACATTCCCAATG
TATTTATCCACAACTTCAAAAAGCAGGATCCTGTGGAACTGTTTTACCTG
ATGTTATGTGCAAGGTATGTTTAACTTTTCCATATATCGGACAATAACAa
tacgtaatagttatcggacagttacgagtacaatatgagaatcGATAACC
ATTACATATTGTACGAACAAATGTCtcataactggtttatcggtgaccca
aaaaatgcacactttttgtgttggaaaaaagtgCAGGACACTTTTATAGC
AAAGAACATCTTTACGTCAAttcatattttgtacatgtaaaatacaagat
acaTTGTAAAAGAACACCAtgattgtactctttttaaccaatcagattgc
agaaaCTTTTTGTATCGCCGATAAACTCAGTTTCTTGCTTATATGGGGTA
TCTGGATAAGTAAAACTTCTTTATTGGTGAGATCTTAACTATATTTCAAT
TCACCGCTGTAATTTTTCGAACTCTGCCAAAATAATGAGACAGAGGTGTT
TTAAACCCTCTGAACAAATCAAGATGAaactgaaaatcaatttttacaGG
TGATTTCATTGGATGACGGAGAAGCATTGGGACCGAACGAGCAAGGCGAA
GTTTGTACTGGAGGAAATCAACTCATGACAGGTAACTAACATGGAAGAAG
TTTCTTTATCTTTACAAGCTATttagtttgaaaaaaagtcagacaTGGAA
CAGTGTCGCAATCTGATCAGAATCTGATGAAATGCAACAGGTCCTCTTTA
CTAGCAGGAGTGATTCCCACAAATCAAGAATCCAGTATCTATTcctttat
aaaaagaaaacgcgaatatcataataaaaacccattttccttcaaaaata
caggaactgaattttccctaaatataAAAGACCTTTTTtgtcaacatttt
cgagcattCTCAATTGTCCAAAAGTTCATTAATTTCAAGTGGACACTCGT
TTTTGCTACAATGTGGAAACCATGCCAATGTTGTCAAGACCGATTCCCGT
cagagtggtttccacatggtAACATAAGACAGTGTatacttaaccctatt
cggcctagggggagggctgtttctgttcggaggtcaaattattggtaata
gctcctgaaataatagagcttttgtcatgaaacacccctgtgtcacaggc
ccggtggaacccccaccccggtggaaaaataggccaaaaaatcgtccccg
gtggaaaaaatatcctacaatttcaacccctcaggtgagttaaggcaagt
ctcaaacatattttgcgtgacgcgcaccgcttcccattgttccttaactt
tcgtatatagctcaaaagaagcgtattaatgagagaatttcggaaagtgc
tgggtcagaaattgaaattaagccaatctcaagatatcgaccaaaaactg
attttgacgttatgaaatacatcgaaaaaacacatcataagtaagattca
aatgacaTCATTATTGAAAACAGCGATATAACTTCAAgtctattaatgca
atcaacaccaaattttgactaaGTACTTAAATTTTAACacttaaattttt
gacccagcactttccgaaatcctctcattaatacgcttcttttgagctat
atacgaaagttaaggaacaatgagaagcggtgcgcgtcacgcaaaatatg
tttggaacttaccttaactcacctgagaccactgcgaaattgctctatga
ttttatccccattgaaaactgaatgtaaaaaattgcactccaaaaccatc
cccactggaattttcgagctggaaacaatagattttctatccccattggc
actttgatagaaattttcatccccactgagggaaaaagtccTACcagggc
actgagacaggggtatcatgaaattttctgtaaattcctaatttttattt
agcttcaaaaaaaaaattctgacagtaaggtgtcacaaaaattgacactt
ttccaatacaaatttattttttatgtcaaatatatcgtttaaaccgtaat
ttattgaatatttaggataagataagcattttaaactctggcaacttttt
tctaaagcttttgttagaatacaataactatttataagaacaaaggaaat
tttcggtttttgctcactttaggCATGATGTGTGACGTcaccaaaaaaat
cttttgtcaaaagttaccttatgtgacaaggattgcgtgtgccaaatttc
atccaaaaagacccactagatcaaaagttaaggggtggtacaggaaaaac
cccccctagttttgaaccgcccctaaaaacctaggttgaatagggttaaa
aagaGATTGGACTTTAGGCCCCTTTAAACAAATTAATCTTATTAAGAAGA
AGTCGAGAgtagaaatcaaaatcaataattAGAAATGAGTCGAATAATTT
CGATTATCTACAGGTTATTACAACAATGAAGAGGCGACGAGAAACACGAT
CGATGAAGAAGGATGGGTCCATTCAGGTGATCTTGGATACTATGATGATG
ATCTCAATTTTTTCATCATCGATCGATTGAAAGAACTCATCAAGTATAAA
GGATTGCAAGTAAGAATATTTCATCAATATATGCGCGCATTGACCTTAGT
TCGATAGCAAACTACTAAGCTGAAGACTGGAGTGAACTCTAGTTTAGTCG
GtcaactttctgccctgcctgtTCAAACtgttagagtaggcaaaaagtgg
gcacaaagttggcagttaaaatctttgcctggaaaagattaaaaaaagtc
aTTGAATTGACGTTAAAAGAGGGCAacgcattgactttagacagccaaca
ACATTTATTCTCGATTCATCATATGCACCATTGAAATGTCTTCCAatgac
ccaacagctgattggttgatagtgacgtattgactgattttacgtcactt
acaaccaatcagctgttgggtctgtgatgtaatgttagaagacattgaag
tgatgcatatcatgaattagaaTAGGCATACGGGGAAAATTGGGCCTTTT
AACTAGAGCTGAGATCCGAACACATGACTTTCTTAGTGCGACTGCTCTTC
CGACTTTTAGCAAATATttgctttaaaatttaaaacagttaagcGATATA
TTTCGGTGGTCACCATTCTcaagcttataaaaaatacaagtTTTCTATCA
GATTACACAAATTTCTATCCACATctaaaaaattcagttttttcgAGAGT
AATTAAAATCGAACACTTGTATTTTACCACCGAAATATATCTCTTGACtg
tttttaaatcttaaactttgaaaaatggctTCAAATGATAACATATGCTT
TTAGCATGTCTCGTAAGACATATTTTTAAAAGCAtcgagtttttttttat
tagaaacatCGCTTCTTGAGTTGAATTTTATTTCTTCAGGTGGCACCGGC
TGAACTTGAAGACCTTCTCCTCGGTCATGATCAAATAACGGATGCTTGTG
TCATCGGCGTGCCGTGTGACCGCACGGGCGAACTGCCACGCGCGTACGTC
GTTAAGCGACCTGATTCAACCCTTACGACAAAAGACGTTGAAGATTACGT
GGCTGACAAACTTTCAGATCATAAGAAACTTAGAGGAGGTGTTGAATTTA
TCGAACAATTACCGAAATCGGCTGCCGGCAAGCTTTTGAGAAGAGTGCTT
AAAGACCAGTTTTTGAATAGTACGAAATAGTGccaatgatttttgaaata
atatttaCACAACATAGAAAGCTTTTTCATTAGTAAAATTAGTCTTGATA
GATAGATAgactaaaaatttgttttatgtATATTTTTGATTAACCACAAA
ACACTGTAAATAATAGTTCTAAATGATTTTTAAGGTAAAAATTATAAATG
ATAATAAACGATGAAATGTTATGAAGTATTGCTTACAGAGagttaatcaa
tttttttccataattcctgttttgtttatttctttctttgaaaTCGGACG
ATGCTTCCAGGGGCGTGGTTGATGCTTGACCACGTGCTTGAGGATGAGGA
GGAGGACGTTGATGGGTTTGATGGACATACTGACTTTGCTTTGCTACAAA
TGTTGCAAATTTCTGGTAGCAACGAGATCGTGTCCTGCAAAAGAAATCGG
AAAAATGGTCACCTTTTTTTGTTGTTCGTCAAATGTGAAAATGGTAGaca
caaaacaaatcaaataatGAAGATTTGAACCAGAGAGGGGAAACATGTTG
TCGTTTTCGTAACATTTTTTTGTCCATTATATACATCATGGACGTATTGC
AATTATACAGGGCCACAAAAACTACAGACACAAAACGAAAGAGCAACGCC
CGGCAACGCCTGTCAATCACTTTGCATGGGTGGCAATCGATGAGTTTACT
TTGACAGTAGtgaagttaagtaaatcggtaaaatcacg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00059682TCONS_00059682Clytia hemisphaericatranscript
TCONS_00059683TCONS_00059683Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00059682-proteinTCONS_00059682-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:233195..242482 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.21	6.35	17.41	20.05	35.33	28.53	25.8	26.24	19.04	20.83	19.25	14.34	22.81	19.8	22.47	30.29	24.38	25.36	19.9	15.54	18.72	20.42	13.14	13.16	46.23	37.96	10.93	7.44	9.92	9.27