TCONS_00016672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016672
Unique NameTCONS_00016672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016672 ID=TCONS_00016672|Name=TCONS_00016672|organism=Clytia hemisphaerica|type=transcript|length=266bp
CTAGCGATGCAAATCATAGaaattaaacaacaaaatgaagaagacaagaa
gAAAGTAGAAGAATCAAAACTGAAATGTAGAGAGCTAGAGGAGAACAACA
CCAAACTAAAAATAGAACTATCATCTGTGGAAGTAAACTACTGCACTGTC
CAGGAAGATCTGGAATATAACTTAGAAGAACTTGAAAAccccagcaaaag
tgatgacatgacatgacacattgggaccagcaaaatggtcaaaatttttc
tcaccactcgtttttg
Run BLAST on NCBI

transcript from alignment at sc0000246:76852..78598-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016672 ID=TCONS_00016672|Name=TCONS_00016672|organism=Clytia hemisphaerica|type=transcript|length=1747bp|location=Sequence derived from alignment at sc0000246:76852..78598- (Clytia hemisphaerica)
CTAGCGATGCAAATCATAGAAATTAAACAACAAAATGAAGAAGACAAGAA
GAAAGTAGAAGAATCAAAACTGAAATGTGTAAGTCAAATCATAGATTTAC
ACTGAATTCGCATGACCTGCCATTAATCGATTGAATCCACCATTTTTGCA
CTCCCAATAGTTTTCAGAAAAAATACGCCTGGTGATATGATGCCCAAGGG
GGGGTATAAGACTTAGGGCAGCTCCAAACTTCGAAATTAGTGCCAAGTTA
AAATGATTTACTCCAAATCAATCATCTTCAACCTTGATAATCGCGCGATG
GTCTTTTGCTAGTGAAAAAGATGAATTAATTAAATTGCTTCAAGCAAACT
AACTGATCATTCATAGTTTGCTTTGAGAAATTTAGGATTGTTTTGGCTTT
CTGACATTGTATGATACCGTATTACTCAGATGCCTACATTATATTTCGTT
TTACAGAGAGAGCTAGAGGAGAACAACACCAAACTAAAAATAGAGTAAGA
ATAATTGATTTCCATTTAAAGCTTACCCTTCAGCTCAGATGTCTGTAATT
TCCAAAGATAACTTACACAAAGAGATTTTTGGGTTTTGGCGATTCTGAAG
GATCGAATTCATCGTTCGATATCTGCAGTTTCATGTGACGTCAGTCGAAT
TTTCGCAGTGTAAAGTGACTTCAATCACAGATTGCACTGCAATGGACTAT
GTTCCAATCCCAATTACATATTTACGTTTCAGTTCCTTATTGAATATCTC
GTTTTTCCGTTAGACTATCATCTGTGGAAGTAAACTACTGCACTGTCCAG
GAAGATCTGGAATATAACTTAGAAGAACTTGAAAAGTGAGTCCACTCTTA
TTGATCAATTGCTAAGATATATAGTGAGAGCTACAATGTTCTTCGTGTGC
ACAGACTTGTTAAAAGCAAACTAACTTTTTTGAATGATCAATTAGGTCCA
TAAGATCACAAAAACAAGTGGTGAGAAAAATTTTGATCTTTTTGCTGGTC
CCCATGTGACGTCATCACTTTTGCTGGGGCTTGAAAATGAAAGTGAAAAT
TAGAAGCTCATATATGGCTCAAATGAAAGATATTTATCCAAGGATTCCAA
AAAATATCACAGCATATCCCTGAAAACCAATATATGAGAAGCTATAAAGG
AAAATAGCTCAAAAAAATGACGTCATCGATGACGTCATCGGCAATTAAAA
AATCGTCGAAATCGAGAAATCTTTGCTTCATTTGAAAGAGGACCTGCTTG
GGAACAGAAAATATTACTACTGAAAACCTTGAATTTCAATTGATAGGAAA
TTATTCTGTGAAATGCGTTTGACTTGACTCTCAAGCTTTTTAAAGATTCC
TGGGCGTGCCCGAAGCTAACCTTTCACAGGCAAATTTAATGAATTACAAA
TTTGCTGACAGGGGCTTTCAAGGAGTAATTCAGATTTTTTTGTAGTAATA
TTTTTTGTTCACTAGATGGTCCTCTTTCAAACGAAACGAAAAATTTTAGA
TTTTGACGATTTTTTTATTGTCGATGACGTCATTCTTTAAGCTATTTTCC
TTTATAGCTTCTCAAATATTGATTTTCAGGTATATTTTGTGATATCTTTT
GGAATCCATGAATAAATATCTTTCATTTGAGCCATATATGAGCTTCTAAT
TTTCACTTTCATTTTCAAGCCCCAGCAAAAGTGATGACATGACATGACAC
ATTGGGACCAGCAAAATGGTCAAAATTTTTCTCACCACTCGTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009320XLOC_009320Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016672-exon-sc0000246-1575043694:78521..78598TCONS_00016672-exon-sc0000246-1575043694:78521..78598Clytia hemisphaericaexon
TCONS_00016672-exon-sc0000246-1575043694:78105..78142TCONS_00016672-exon-sc0000246-1575043694:78105..78142Clytia hemisphaericaexon
TCONS_00016672-exon-sc0000246-1575043694:77764..77835TCONS_00016672-exon-sc0000246-1575043694:77764..77835Clytia hemisphaericaexon
TCONS_00016672-exon-sc0000246-1575043694:76852..76929TCONS_00016672-exon-sc0000246-1575043694:76852..76929Clytia hemisphaericaexon
TCONS_00016672-exon-sc0000246-1510915933:78521..78598TCONS_00016672-exon-sc0000246-1510915933:78521..78598Clytia hemisphaericaexon
TCONS_00016672-exon-sc0000246-1510915933:78105..78142TCONS_00016672-exon-sc0000246-1510915933:78105..78142Clytia hemisphaericaexon
TCONS_00016672-exon-sc0000246-1510915933:77764..77835TCONS_00016672-exon-sc0000246-1510915933:77764..77835Clytia hemisphaericaexon
TCONS_00016672-exon-sc0000246-1510915933:76852..76929TCONS_00016672-exon-sc0000246-1510915933:76852..76929Clytia hemisphaericaexon
TCONS_00016672-exon-sc0000246-1491911889:78521..78598TCONS_00016672-exon-sc0000246-1491911889:78521..78598Clytia hemisphaericaexon
TCONS_00016672-exon-sc0000246-1491911889:78105..78142TCONS_00016672-exon-sc0000246-1491911889:78105..78142Clytia hemisphaericaexon
TCONS_00016672-exon-sc0000246-1491911889:77764..77835TCONS_00016672-exon-sc0000246-1491911889:77764..77835Clytia hemisphaericaexon
TCONS_00016672-exon-sc0000246-1491911889:76852..76929TCONS_00016672-exon-sc0000246-1491911889:76852..76929Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000246supercontigsc0000246:76852..78598 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.4329	13.3847	3.04824	7.10204	6.98541	2.5591	1.54373	0	9.61239	12.9545	20.5549	10.2957	7.78826	3.13458	14.568	16.7069	17.7611	18.7156	1.87002	1.31124	5.02007	8.63029	17.0799	20.3272	3.43282	2.3011	4.93931	2.63568	11.2185	11.3637
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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