|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016688 ID=TCONS_00016688|Name=TCONS_00016688|organism=Clytia hemisphaerica|type=transcript|length=4149bpRun BLAST on NCBI protein sequence of TCONS_00016688-protein >TCONS_00016688-protein ID=TCONS_00016688-protein|Name=TCONS_00016688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1045bp MAINKTSFSSVDFVGERHWEGSTPRSPRAASFGGVERIRSSSFDGFHSKNRun BLAST on NCBI transcript from alignment at sc0000246:149406..167112- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016688 ID=TCONS_00016688|Name=TCONS_00016688|organism=Clytia hemisphaerica|type=transcript|length=17707bp|location=Sequence derived from alignment at sc0000246:149406..167112- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000246:149406..167112- >TCONS_00016688 ID=TCONS_00016688|Name=TCONS_00016688|organism=Clytia hemisphaerica|type=CDS|length=75312bp|location=Sequence derived from alignment at sc0000246:149406..167112- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016688 vs. Swiss-Prot (Human)
Match: WDR59 (GATOR complex protein WDR59 OS=Homo sapiens GN=WDR59 PE=1 SV=2) HSP 1 Score: 309.301 bits (791), Expect = 6.358e-88 Identity = 151/397 (38.04%), Postives = 246/397 (61.96%), Query Frame = 2
Query: 233 DATLKYPEWNASSLGINRIGKLAILAAKRGFMVIDFDYPNKPKKYLC-NFKWEPGSLEWNPHHANDDLFASVMNQKIDIWDINTLQNSSHPQSTLSGHTRAISNMNWNYFDPNSLLTCSMDTYINLWDIRKNKRPASTFTTVAGSSQVKWNRKNNHLFGSAHDGDIRIWDIRKGNVPLVYIAGHLARIHAFDWCPHKEEFFVTASQDSTVKVWNMKTPKQSWASINNGAPVWKAKYTPFGNGLVTILVPQLRRTENSMFLWNMSDFKTPVNKFVGHEDVVLEFHWRTQRKDEHEEYQLVSWSKDQSLRLWRASKKNIQSITGEPYTRLSEEAMDGSLLSIDNSHFEDKKKTKKHVNSPDSPPMMSSTYKDPSTFKENINNQMETENKP--LGRPEKL 1414
+ +++ + A+++ ++ +G+ A+L+ +R +++ D P + + + KW+ G+++WNPH + FA+ NQ++D++ S +TL GHTR IS+++W F+P+ L+T S+DTYI +WDI+ ++P + VAG+SQVKWN+KN + ++HDGD+RIWD RK + + Y+A HL++IH DW P E T+SQD++VK W+ + P++ + PVWKA+YTPF NGLVT++VPQLRR ENS+ LWN+ D TPV+ FVGH+DVVLEF WR Q K+ ++YQLV+WS+DQ+LR+WR + + + + E SLL + +K +++ D+ ++++ + KE+ + E K LG P+ L
Sbjct: 9 NVVVEFRDSQATAMSVDCLGQHAVLSGRRFLYIVNLDAPFEGHRKISRQSKWDIGAVQWNPHDSFAHYFAASSNQRVDLYKWK--DGSGEVGTTLQGHTRVISDLDWAVFEPDLLVTSSVDTYIYIWDIKDTRKPTVALSAVAGASQVKWNKKNANCLATSHDGDVRIWDKRKPSTAVEYLAAHLSKIHGLDWHPDSEHILATSSQDNSVKFWDYRQPRKYLNILPCQVPVWKARYTPFSNGLVTVMVPQLRR-ENSLLLWNVFDLNTPVHTFVGHDDVVLEFQWRKQ-KEGSKDYQLVTWSRDQTLRMWRVDSQMQRLCANDILDGVDEFIESISLL----------PEPEKTLHTEDTDHQHTASHGEEEALKEDPPRNLLEERKSDQLGLPQTL 391 HSP 2 Score: 293.893 bits (751), Expect = 1.056e-82 Identity = 191/592 (32.26%), Postives = 291/592 (49.16%), Query Frame = 2
Query: 1580 QVLHQEFTLLNVNSPYFKVEKKDSEARLCVIAVRTQYIFFKLHVTFPMKYPDKDPPVFQFSKDSQIGDGSKQNIVNALREISTSHVNRNRPCLEACLRRLRYVIE---NIEETTSQ--------LSGDSPSVLQRTGSYDYKNGEVGHDMTDSTVPFPRTCGARFCSVGDKLVVFSRP-EKYNNIFVAERSLRSMSALNAY---------LQTN----------------------SNDVFDNSGENQLGTLR-------KKPKAIGLVYISNTSLLIPVSKELAQNYALHGDDPSALCLRNAELADKVMRKDLVQTWTLLSKILSKEVGPDSSSSFEKVPWACHPFGRRMINSLFDYYERLKDVQTLAIMSCLLDKQH----LPEDIQELSKITKIVDVEEDKPPTRPSTRFS----NPDSFQVSPEFSPYDVYNRSSVGQDDSPLNFAPEEKSY-DPEEELRKQHSENCRLLNPKETFRYDQFKRNYSEILYRWDMQAQRTEVMKFCTEQHEEKRIMDIVLDCNSCNTQRNNPCCAKCKSFIVKCSVCRIGVRGLLSFCMTCGHGGHMYHLIDWFKQNDWCATGCGCYCL 3178
Q L QEF+L+NV VE D+ R C ++V K+ V FP +YP+ P FQF + I K ++ L++ + V R + CLE CLR+L +E N E++ S ++ P+ + T +Y D+ +PFPRT GARFC G LV F+RP + + E + RS+SAL+AY ++T S+ + + + R ++ KA G V I + + L+PV K L + Y L+ +D C +NA A V RKDLVQ W+L + +GP S E PWA HPFGR+++ SL +Y RL+DVQTLA++ + + Q LP + + V + P+ S+ +P + + + SS + SP +Y DP E R QH +N RLL+P T ++D FK+ Y EILYRW ++ +R EV+KF + + + ++ + C+ C ++ CA CK F +C++C + VRG +FC+TCGHGGH H+++WF+ + C TGCGC+CL
Sbjct: 389 QTLQQEFSLINVQIRNVNVEM-DAADRSCTVSVHCSNHRVKMLVKFPAQYPNNAAPSFQFINPTTITSTMKAKLLKILKDTALQKVKRGQSCLEPCLRQLVSCLESFVNQEDSASSNPFALPNSVTPPLPTFARVTTAYG--------SYQDANIPFPRTSGARFCGAG-YLVYFTRPMTMHRAVSPTEPTPRSLSALSAYHTGLIAPMKIRTEAPGNLRLYSGSPTRSEKEQVSISSFYYKERKSRRWKSKREGSDSGNRQIKAAGKVIIQDIACLLPVHKSLGELYILNVNDIQETCQKNAASALLVGRKDLVQVWSLATVATDLCLGPKSDPDLE-TPWARHPFGRQLLESLLAHYCRLRDVQTLAMLCSVFEAQSRPQGLPNPFGPFPNRSSNLVVSHSRYPSFTSSGSCSSMSDPGLNTGGWNIAGREAEHLSSPWGESSPEELRFGSLTYSDPRERERDQHDKNKRLLDPANTQQFDDFKKCYGEILYRWGLREKRAEVLKFVSCPPDPHKGIEFGVYCSHCRSEVRGTQCAICKGFTFQCAICHVAVRGSSNFCLTCGHGGHTSHMMEWFRTQEVCPTGCGCHCL 969 The following BLAST results are available for this feature:
BLAST of TCONS_00016688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.