|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023798 ID=TCONS_00023798|Name=TCONS_00023798|organism=Clytia hemisphaerica|type=transcript|length=2729bpRun BLAST on NCBI protein sequence of TCONS_00023798-protein >TCONS_00023798-protein ID=TCONS_00023798-protein|Name=TCONS_00023798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=501bp MADENAAYCPQNEQASSQENSVETASKDEIDAGDQSNDGENNETTSTEQARun BLAST on NCBI transcript from alignment at sc0000462:100117..109976+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023798 ID=TCONS_00023798|Name=TCONS_00023798|organism=Clytia hemisphaerica|type=transcript|length=9860bp|location=Sequence derived from alignment at sc0000462:100117..109976+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000462:100117..109976+ >TCONS_00023798 ID=TCONS_00023798|Name=TCONS_00023798|organism=Clytia hemisphaerica|type=CDS|length=18072bp|location=Sequence derived from alignment at sc0000462:100117..109976+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023798 vs. Swiss-Prot (Human)
Match: NMT2 (Glycylpeptide N-tetradecanoyltransferase 2 OS=Homo sapiens GN=NMT2 PE=1 SV=1) HSP 1 Score: 538.495 bits (1386), Expect = 0.000e+0 Identity = 258/382 (67.54%), Postives = 312/382 (81.68%), Query Frame = 1
Query: 466 FEFWDTQPVPKLDDKISLHTNESVEGDKQDIRQEPFSLPPGFEWDTLDLGDEDQLKELYTLLNENYVEDDDNMFRFDYSPTFLSWALRPPGFKNIWHCAVRVSTNKKLVGFISGVPAKIKVYEKHVNMVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAGIVLPKPVGTCRYWHRSINPKKLIEVKFSHLKRNMTMQRTIKLYRLPERLKDRELRPLTEADVPSGHKLLSNYLAKFDLAPMFDEEEFKHWFLPKDGVVTAYIKMDDSDNVTDMFSFYQLPSTIVDHPKYKTLKAAYSFYNVATTMTLKDLLSDALIVARNDGFDVFXXXXXXXXXXXXXXXKFGIGDGNLNYYIYNWKCPTIPPQKVGLVLQ 1611
++FWDTQPVPKLD+ I+ H ++E DK ++RQEP+SLP GF WDTLDL D + LKELYTLLNENYVEDDDNMFRFDYSP FL WALRPPG+ WHC VRVS+NKKLVGFIS +PA I++Y+ MVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAG+VLPKP+ TCRYWHRS+NP+KL+EVKFSHL RNMT+QRT+KLYRLP+ K LRP+ D+ S +L++ YL +F LAP+ DEEE HWFLP++ ++ ++ + +TD SFY LPST++ HP +K+LKAAYSFYN+ T L DL+SDALI+A++ GFDVFNAL+LMEN+ LE+LKFGIGDGNL YY+YNW+CP +KVGLVLQ
Sbjct: 119 YQFWDTQPVPKLDEVITSHG--AIEPDKDNVRQEPYSLPQGFMWDTLDLSDAEVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLLQWHCGVRVSSNKKLVGFISAIPANIRIYDSVKKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAGVVLPKPIATCRYWHRSLNPRKLVEVKFSHLSRNMTLQRTMKLYRLPDVTKTSGLRPMEPKDIKSVRELINTYLKQFHLAPVMDEEEVAHWFLPREHIIDTFVVESPNGKLTDFLSFYTLPSTVMHHPAHKSLKAAYSFYNIHTETPLLDLMSDALILAKSKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWRCPGTDSEKVGLVLQ 498 The following BLAST results are available for this feature:
BLAST of TCONS_00023798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.