TCONS_00017473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017473
Unique NameTCONS_00017473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017473 ID=TCONS_00017473|Name=TCONS_00017473|organism=Clytia hemisphaerica|type=transcript|length=266bp
ATTGCTCAGTCCTATGGAGTCCAAGTGCTGTCAGTTCTACCCAAAGATTA
gaagaaatccaaaaatcaTTTCTCAAAAGAATAACTGGCACTCCAAAAAA
CTATTAGGGATTGTCTGAAAAAGCTAAAACTTTACTCACTTCAAAGAAGA
AGGGAGAGATAGCGGATCCTGTATACATGGAAAATAGCTGAAAATCTGGT
TCCAAACATCAAcaataaatttcaattcaagGAACTCCCAAGATTGGGAA
GGATGTGTGTTCGCAC
Run BLAST on NCBI

transcript from alignment at sc0000267:203442..203707

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017473 ID=TCONS_00017473|Name=TCONS_00017473|organism=Clytia hemisphaerica|type=transcript|length=266bp|location=Sequence derived from alignment at sc0000267:203442..203707 (Clytia hemisphaerica)
GTGCGAACACACATCCTTCCCAATCTTGGGAGTTCcttgaattgaaattt
attgTTGATGTTTGGAACCAGATTTTCAGCTATTTTCCATGTATACAGGA
TCCGCTATCTCTCCCTTCTTCTTTGAAGTGAGTAAAGTTTTAGCTTTTTC
AGACAATCCCTAATAGTTTTTTGGAGTGCCAGTTATTCTTTTGAGAAAtg
atttttggatttcttcTAATCTTTGGGTAGAACTGACAGCACTTGGACTC
CATAGGACTGAGCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009773XLOC_009773Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017473-exon-sc0000267-1491911889:203442..203707TCONS_00017473-exon-sc0000267-1491911889:203442..203707Clytia hemisphaericaexon
TCONS_00017473-exon-sc0000267-1510915933:203442..203707TCONS_00017473-exon-sc0000267-1510915933:203442..203707Clytia hemisphaericaexon
TCONS_00017473-exon-sc0000267-1575043694:203442..203707TCONS_00017473-exon-sc0000267-1575043694:203442..203707Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000267supercontigsc0000267:203442..203707 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.7294	11.4634	14.6552	10.1213	23.2867	20.7273	14.9895	28.2628	6.12698	5.46795	8.41856	7.971	5.94252	2.36862	3.80544	3.1621	0	0.818967	4.54603	2.49634	3.65012	9.36608	2.32939	3.14529	5.40056	22.7768	9.44123	6.33607	4.69708	13.301
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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