TCONS_00017579 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017579
Unique NameTCONS_00017579
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length580

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017579 ID=TCONS_00017579|Name=TCONS_00017579|organism=Clytia hemisphaerica|type=transcript|length=580bp
aatcagAAGAAAATAATAAGAATGAATCTTGTAATATATAATGAACAAAA
CTGATCACCAAAAACATGATAATGAAGAAGAAATGACACCTAAAGAAGTC
CCTAATCAaacagccaatcagattgcaagTTCTCAACAACCAACCAATCA
TATTGAAGCTTCAAACAATGGTCATGACATTGATGTCATGGTAACAAATG
TGATTAAAGATGGTGGACAAGGGAACGGTCACAATATTTTGAAGAATACA
TCACCTGAGAAGACAACTATCTCGTCGTCAACGAGTgacgaaaatatttt
cagcagaATCGAAGTGGAAACAAGATCAGATCTCATTCAACAGGTATTTG
TTTGAACAGCATTGTTCTTAATACGGTCTCTTGTGCAGGTCATGAACACg
cgacaatttcatgatttgtCCAAACTTAAAAGTGTCGCTTACATTACATT
attcatagatttataaagcccgaagggctagatggcgtacttttgctgaa
aagtgtgccgtggttaggtaggaaatcctgtctaaatcacgtgacattac
aatagaatttcagcgcttgaccaatcagaa
Run BLAST on NCBI

transcript from alignment at sc0000271:30513..31092+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017579 ID=TCONS_00017579|Name=TCONS_00017579|organism=Clytia hemisphaerica|type=transcript|length=580bp|location=Sequence derived from alignment at sc0000271:30513..31092+ (Clytia hemisphaerica)
aatcagAAGAAAATAATAAGAATGAATCTTGTAATATATAATGAACAAAA
CTGATCACCAAAAACATGATAATGAAGAAGAAATGACACCTAAAGAAGTC
CCTAATCAaacagccaatcagattgcaagTTCTCAACAACCAACCAATCA
TATTGAAGCTTCAAACAATGGTCATGACATTGATGTCATGGTAACAAATG
TGATTAAAGATGGTGGACAAGGGAACGGTCACAATATTTTGAAGAATACA
TCACCTGAGAAGACAACTATCTCGTCGTCAACGAGTgacgaaaatatttt
cagcagaATCGAAGTGGAAACAAGATCAGATCTCATTCAACAGGTATTTG
TTTGAACAGCATTGTTCTTAATACGGTCTCTTGTGCAGGTCATGAACACg
cgacaatttcatgatttgtCCAAACTTAAAAGTGTCGCTTACATTACATT
attcatagatttataaagcccgaagggctagatggcgtacttttgctgaa
aagtgtgccgtggttaggtaggaaatcctgtctaaatcacgtgacattac
aatagaatttcagcgcttgaccaatcagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009833XLOC_009833Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017579-exon-sc0000271-1491911889:30513..31092TCONS_00017579-exon-sc0000271-1491911889:30513..31092Clytia hemisphaericaexon
TCONS_00017579-exon-sc0000271-1510915933:30513..31092TCONS_00017579-exon-sc0000271-1510915933:30513..31092Clytia hemisphaericaexon
TCONS_00017579-exon-sc0000271-1575043694:30513..31092TCONS_00017579-exon-sc0000271-1575043694:30513..31092Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:30513..31092 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.304564	0.186573	0.553839	1.92941	0.177473	0.264171	0.213819	0.43138	0.477261	0.967844	0	0.690059	1.06777	0.889555	0.345573	0.492545	1.60854	1.05451	1.9146	1.55088	2.28894	1.42789	0.825045	1.21938	0.660169	0.541718	1.61245	1.09281	0.638667	0.287822
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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