TCONS_00017646 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017646
Unique NameTCONS_00017646
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017646 ID=TCONS_00017646|Name=TCONS_00017646|organism=Clytia hemisphaerica|type=transcript|length=287bp
AAGCCATTGCTCAAATCCCAGTATCACTATTTATACGGGAGTGAAACCAC
GCTTAGTCTTTCTTATTCTTGTGTTTTCAATTTTGGGATGACATGTGCAG
CAGACCCAAGACCATGTTTTCAAGTGTCAAAGAAAAGTCCAGATAGTTAA
TTAAATAAATCAAGAACTCTTGATGGATGTCTGTTCTGCTGGTCCTTACC
TTACACTCTATGATTGCTGTTGGCTACTCTACTGCtgaattccttcaaaa
acaataaacatTGCTGACTGATGACAACCAATCCAAN
Run BLAST on NCBI

transcript from alignment at sc0000271:86792..87078

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017646 ID=TCONS_00017646|Name=TCONS_00017646|organism=Clytia hemisphaerica|type=transcript|length=287bp|location=Sequence derived from alignment at sc0000271:86792..87078 (Clytia hemisphaerica)
NTTGGATTGGTTGTCATCAGTCAGCAatgtttattgtttttgaaggaatt
caGCAGTAGAGTAGCCAACAGCAATCATAGAGTGTAAGGTAAGGACCAGC
AGAACAGACATCCATCAAGAGTTCTTGATTTATTTAATTAACTATCTGGA
CTTTTCTTTGACACTTGAAAACATGGTCTTGGGTCTGCTGCACATGTCAT
CCCAAAATTGAAAACACAAGAATAAGAAAGACTAAGCGTGGTTTCACTCC
CGTATAAATAGTGATACTGGGATTTGAGCAATGGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009863XLOC_009863Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017646-exon-sc0000271-1491911889:86792..87078TCONS_00017646-exon-sc0000271-1491911889:86792..87078Clytia hemisphaericaexon
TCONS_00017646-exon-sc0000271-1510915933:86792..87078TCONS_00017646-exon-sc0000271-1510915933:86792..87078Clytia hemisphaericaexon
TCONS_00017646-exon-sc0000271-1575043694:86792..87078TCONS_00017646-exon-sc0000271-1575043694:86792..87078Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:86792..87078 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.113992	0	2.08228	0.754291	2.86489	1.33006	0	3.44614	1.00142	2.39076	0	0	0.215599	0	0	0.71739	1.56465	0.501269	1.44262	0	0	0.783054	0	0.126778	0.71047	0	0.306229	0.0446014	0.865568	2.72676
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017646 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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