TCONS_00017679 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017679
Unique NameTCONS_00017679
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length985

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017679 ID=TCONS_00017679|Name=TCONS_00017679|organism=Clytia hemisphaerica|type=transcript|length=985bp
ttcaggacCTAAAAATCTCAACATAAAGATTTCATATATACTTGGTTTAG
AATAACCAAAcctttgctgatgtcagccatTATGTTCCATAATGGAGTCT
TTACTGTCATGTGATACTGGAGAAACATTCAAAGTGGTTCATGGTGAAAC
CTTGATTGGGCGTGGtccatttttaaagGTTACAGACAGCAAAGTATCAC
GAAAACATGCAATATTGAAGTACGCAGAAGATGGAGAGATCTCCCTCAAA
CCGattcacaAAAATCCAACCTTCCTTTACATCGAATCTACTGACAATTG
GCAACCATTACAAAAGGATATTTGGCATACTTTACAACATGGATCGAAGA
TTTCACTCTTACCCAACTCCCTGAAGTTTGAAGTTGTATCGAAAAAACAA
AGCACAGTCGAAAGCTTAAAAGAAAATGGATCagAGAAGAAAAAGTCGGA
AAATGCTGCTACcgctaaagaaaataaagcaaaGGAAGACTCGCAACCCG
TTGAAATCAAACTGTCATCAACAGCGTCTGagaagAAAAAGTCGGAAAAT
GCTGCTACCGCtaaagaaaataaagtaaaGGAAGACTCACCACCCATTGA
AATCAAACTGTCATCAACAGCGNGATGCTGCTACCGCtaaagaaaataaa
gtaaaGGAAGACTCACCACCCGTTGAAATGAAAATGTCATCAACAGCGTC
TGGGAAATCTCTATTGAGAACGAAACCACTTCCATCAAAGAAGAATGCGA
AACGCCAGTTACCTTCTTGGATGTTAAATGTTTCTACGGGAGGagatgca
aagaaaaaaacagGTATCAAAAGAGAGCTGAAATCCAAGAAAGCCAACAT
TTCAACTGAACAAAATGACATGTCAAAAACTATTGGAGGAGAGAGCTCAA
AAGGTCGAAAAACAAGTCACGGTTTAAAGTCGCCTGATTTATCGGACGAC
GAAGTTCTCCCTGAGAAGAAGACTTTGGCCAATCA
Run BLAST on NCBI

transcript from alignment at sc0000273:223057..241628+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017679 ID=TCONS_00017679|Name=TCONS_00017679|organism=Clytia hemisphaerica|type=transcript|length=18572bp|location=Sequence derived from alignment at sc0000273:223057..241628+ (Clytia hemisphaerica)
ttcaggacCTAAAAATCTCAACATAAAGATTTCATATATACTTGGTTTAG
AATAACCAAAcctttgctgatgtcagccatTATGTTCCATAATGGAGTCT
TTACTGTCATGTGATACTGGAGAAACATTCAAAGTGGTTCATGGTGAAAC
CTTGATTGGGCGTGGtccatttttaaaggtttgaacATTTTggtttaaag
tctgtctcaaaagatTGTGAACACTTTagtttttaagtattttctcaGCA
CCCATTTATGCTATTTTAGAAaattatacaccgttggaaagatatttgca
ATGGAGAAAAATCTGGaggataaaatatttttgaaaaaatgaaaactgag
gaagaaaatgaagattttttctattgttttaaaaatcatgacATCAGGCT
ATTTAGAACATTTAAACCTTACCAATTTCAAGGCGCCAATTTCAAGGCTG
TGTCCAGATTTTTCGCATCTTTCctaaataaaaagttacagcacTATGAA
GTTGGTCATTTTTTGCCGTTTTAGGCCTACTtcaaaaggctgtaactttc
tTTCTAAGAAAGATATAAAAAACTATACaaagattgggcttttccaaaaa
aaaaacatataccccctgttgaggaggtccatttccgttccaaggcgTAA
GGTTtaatatgtggcggaattccattgggtgatacaaaaatctgtcaaaa
ataactggaattccatgggagtagctttttaaatcctactaaaattcaga
attccagaggggtttaaacctgaaattgcctggaattccaggcgaGTACA
GAATTTCCAGCCACAGGGCggtggacctcctcaacagggggtatatgttt
tttttctggaaaagcccatttgaAATCAGGtaagtttaaattttctaaat
agcctgatatttcatattttcaaaagagtagaacaaattttaattttttt
attttcgtttttcttcttcatttttcattatttcaaaaaaagttctcCTT
GGAAATTATCTTTCAAATGGTGTATAGCTTTCTAACATAGCATCAATGAG
TGCTGAgaaaaagtaaagaaactaaagtgtccacatacttttgagacagg
CCTTAGTAATTTCAACGAATGAAAACAAACTCTTGCAACTTTTTTATGAT
AACGGAAATCTttcattatcttttcaataaattcttctggaaataaaata
atattatcATGAGCCCTGTTTTCAATGTATTGTGACCATAGATACATCAA
CGTCACAAGAAATGAGCCCTGCTCGAAAATCTTCAATTCAGTAATTTTCT
ATCTATCACTGGTTAAAATTTCAAGTGACACACTTATCAATTTTTAATGC
TTTTGCTTCTAAATATTAGGAAGTAActaaaaagtaaaagtaaaaatatc
attgaaattattttcttccattttaCAACAAGGCCTAAGATGATTTTGAC
CAATCTCGAAAAGAGAGTATAGTTTGCCATGCTGTGGAAGTTACTTTAAA
ATTCTTACTTTCAGGTTACAGACAGCAAAGTATCACGAAAACATGCAATA
TTGAAGTACGCAGAAGATGGAGAGATCTCCCTCAAACCGGTTAGTAGAAt
gacgtacacgttttttttagaagaacatctaaaatttttgaagcctttgg
atgttcttaactttttgggtttcaagccttaaaatgttcttattttcacc
attttgtgaccatttttacccattttccaaagaaacgggtgtttttgagt
ccgaAAAACCTtaataatgttcttaacttgttcttaacattttggccatc
gaagccttcttatatagtttgttctcataaaaaaaacgcGTACGGctaca
aattttgatagaatacgAAGTGAATATAATATtgttataagaatggtgtt
ttcccgttttctcatttttaggaaaaatctTTCTGAAATATTCTAACGAT
ATTCTTAAGTTAGTGTTCAAACCCAGCCTAAATCTAGCATTTAATTTATA
CCTCATTCAACATTCAAGCAAAAATTTGGCTGCAGGAataaatatattat
ttttggacctacctccgggtgccccggtggaggtcctataaattaaccca
tgtccgttcgttcgttcgttcgtccgtccgNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNaaaaaattcatttccggccgaaaatgccggaaatatgccgga
aaaaccggttttttggcattttctcaagatttcatcattagttttttctg
atttttttgcaaaaacatgcgtattagcaatgcccaaaacttggctgagt
ccgatttttgagaaaaaatcttttctggttgaaaatgccggaaataagcc
ggaaatcgccatttttgcagattttcatcggactttttcctcaNGTGTGT
AGGTTTAGCGGTTTTTGTGCTCGTTCAACAATATTCAGGAGTGGAATtaa
taaaatagttttttatttttaaaatagaattttatcaaaaggttTTGCTT
CTCTTTCTCTCTCATAGCGTCAACCCCCCTGACATTTGGGGGGGGTTACA
CTCAAAAGAAAACTGGGAGCTAAAATACAGACAAATATTTGGGGGGGGCT
GGAATTTCAATGGCAAGGCTAGGGGCTGACTATTTCTTCTATTATTTCTA
TTTATATCGCCACATTTTTATCCAAAAACCTTTCATTTTACAGCCTatta
attttgtttgttttcactgtGTCCNgcacactgatgcaaaatgataatac
ctaaaatgtgacggagcccgattttcgaaaaataaatttttttccggccg
aaaaagccggaaatatgaTGCCGGAAATACtgattttttggcattttctc
gagattttatcattagtttcttctgattttttgcacgaagaTGCNGAAAC
GATATCAAATCAGCAAATACTTTATACTAGGTATAGGACTGGGGGctgct
taaaaaacttttaatattttggAGGACCTATTTTTTACCTGGGACCTAGA
CCTGGGCTGACCCTATGTCTCAGCTTGAGATCATTGTGACAGATTTGGTT
TCAGTTTTTTTGGTCCTGAGATTCAAATCCTATTTTAACTTCTAAACCAG
TGTGCAAAGACTCATGCTTATGCGCCTCTTTGTTATGgtatttgtactag
taataacatggtttagaggatgatttgggattaataaccccaaNtttttt
tcacacaaaaacattattgataacaatgctcaccatcaagcatgattcaa
ttgtcaataaaactgttttttgcgaccagaactttctatttattttttcc
ttacaaccctttcctctccccccatcaacaatcaatgatgattttttttg
cgttaggcattttcgctaaacgctatattttctgactggttctttttcat
ttttctcctcgcattgctatctaactttcatcatcaggtaggtccattca
gcatctagcttgtttttgtTAAATTCAAGGATGGttgcatattcttaatt
ttttggccactTTCAGCGTAGAATATTGTTGTAATAAAGTGTGTAGGTTT
AGCGGTTTTTGTGCTCGTTCAACAATATTCAGGAGTGGAATtaataaaat
agttttttatttttaaaatagaattttatcaaaaggttTTGCTTCTCTTT
CTCTCTCATAGCGTCAACCCCCCTGACATTTGGGGGGGGTTACACTCAAA
AGAAAACTGGGAGCTAAAATACAGACAAATATTTGGGGGGGGCTGGAATT
TCAATGGCAAGGCTAGGGGCTGACTATTTCTTCTATTATTTCTATTTATA
TCGCCACATTTTTATCCAAAAACCTTTCATTTTACAGCCTattaattttg
tttgttttcactgtGTCCACCATCTTGAATTTTATCTATTATAGTCAATA
TAAATCTGATTTTCCTAGAAACGATATCAAATCAGCAAATACTTTATACT
AGGTATAGGACTGGGGGctgcttaaaaaacttttaatattttggGGGACC
TATTTTTTACCTGGGACCTAGACCTGGGCTGACCCTATGTCTCAGCTTGA
GATCATTGTGACAGATTTGGTTTCAGTTTTTTTGGTCCTGAGATTCAAAT
CCTATTTTAACTTCTAAACCAGTGTGCAAAGACTCATGCTTATGCGCCTC
TTTGTTATGgtatttgtactagtaataacatggtttagaggatgatttgg
gattaataaccccaaAGTTCAgctattttgaagtgttttcaatgaaacga
ggggttattaatccaaaatcacccgagaataccatgttattccgcgttaa
ttatatggtcaaaaaaagaattgaagaacactcaatcgctattcttctcg
aaacttataaaaacattcgaaactataaaaaaccttcgactgacactctt
attttgattggcttaaaaatttcgtacgatattttgttaaccaatcaaaa
tattgtgcgatacttttctttcaaccaatagaaattttacaaaaaagcag
ggctattacggatttatcgccccgctcgtcctttacaaatctaagctaaa
tgtaatcaaccatataattaagCGTGCTCTTAGATGCCTAAAAACATGAA
AGGGTTGGAAACTGCATCTCTAAATACTGAAataccccaaaataaggtaa
ctATAGACTAAACCTGGCTTTTTTAGAGCAAAATAGTAGACTATTCTtgt
gacagctgaaaatattttgaaaaattgataaattgatGGTCGTAATAATA
AAGGCCTTGATGGGGTAGGAAAAgaatcgaaaaattaaaaagtgaggGAA
TTTTTATTAGGGGCACCTGAGAGTAACCAACGAATACAACAATCTGTACC
CAAGCCAGACCCGATATCTATAGGGGGAATTAACAAATATACTACCTCCG
ttgtttcttaaattttcagattcacaAAAATCCAACCTTCCTTTACATCG
AATCTACTGACAATTGGCAACCATTACAAAAGGATATTTGGCATACTTTA
CAACATGGATCGAAGATTTCACTCTTACCCAACTCCCTGAAGTTTGAAGT
TGTATCGAAAAAGTAAGTTTTGTTTCAAGTTAATTTGGAGGGATTCAAAT
GTTTTGGTGACATATTCCCAACCAGGTGCACCGATCATCTTTTAAGAAAA
GTTCAGTACTTTCGACAACTTCTGGCAGTAGAGATTAGCATCCTAAGTCT
TTATTTAGAATTCGGTgcaatctttttttcaatataataatagacctttt
cataaattacgtcacgaacatcgctTGCCTTGTTctgaaattattgccaa
ggtgattaacTCCTAGTGGATTTATTAaaactatttataaaaaaatcatt
taatgtctcaagggacataatcaccatagtaattgtttgaatacgaggca
agtcaTATTTgcgacgtaatttatgaaaaggtctatttattaTAAGTAAA
GTTAAATTTTGAGTAGTACTTNgacgtaatttatgaaaagatctattTAT
TATAAGTAAAGTTAAATTTTGAGTAGTACTTAACTTTACTTATAAGTAAC
AAACGGATAATACTAACCCAACGGATCTCGGAAAAAAAATACTTATCTCA
CTTCATTTTTTCATAGACAAAGCACAGTCGAAAGCTTAAAAGAAAATGGA
TCaggtttgtttttaatttatcaTTTATTATTAAAATGAATATTACAGGT
TCTAGGCACTCAgtgggcctctaaaccgatctcaatttacaaatttcgtG
TAACGAATTTCTTTGGATGGCTTTTCTTTGAAGCCTTTTATGGAAACAGC
AGCTACCACCTCAGACGGCAATTTATTCCACGTAGGGATGGTTCTGTAGT
AGAACGACTTTGTTTGCGGGCCGCGGNNNNNNNNNNNNNNCTGCACCATA
TCACAAAAAGTTCTACGAAACTCTAGTGTTGGTAATTGTAAGCTTCGTAG
TCTATCCTCATAAGAgagatttttgtaaagtttgacaAGCCTTGTTGCAC
GTCTCTGCACTCCTTCCAATAGGTTGACGTGTTTCCTTAGTTTCGGTGAC
CAGACTGATTGTGCATACTCAAGATGCGGTCGAACGAAAGTACAGTACAA
AGTAAGAAAAATCTGTGGGCTAAGGTTTTGGAAGCCACGGTTAATAACTC
CAAGCATCGAAATGGCCTTGTTGACTTGCTTAGAGATATGTTCTTCGAAA
CTCAACTCTGCATCAATAACAACACCAAGATCTTTCTCTATGAAAACATG
TTCCAGTTGATTTCCATTTAGAGTATATGGATGTGTGCATGTTTAATGTT
TGTAAACTTTCCGATTGTAAGTACATGGCACTTGTCTGGATAAAACTGAA
GCAACCAGTCTTTAGACCATTTCTCCAGCTCCTCAATATCTTTTTGTATG
ATAAGAGAGTCATCGATGGAGTCAACTTCTTTAAATATCTTTGTATCATC
AGCAAAGAGTAGTATGGATGAGATGATTTTATCAGGAAGATCGTTGATAT
ATAGAACAAAGTACAAAAAGTAGCGGCCCAAGTACACTACCCTGTGGTAT
TCCACTTACTACATCATTTGTTGTTGATTTTGACTGATTCACTTTTACCT
GTTGTTTACGTCCGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNGTGCTCCTTTGCTCTTATAAATTGGAGTTACATAT
GCTAATTTCCATTCTTCCGGTAGGACTCCCGTCGATAACGATTCGATCAT
TAAAAGTGCAAGGGGTTCTGCAATATAATCTACAAgttcttttaacattt
ttggatgCATATCATCTGGACCAAACGATTTGTTTTCATCAAGTTTCAGT
ATAGATTTGTAAACAAGATCTTTTGTTATTGGTATTCTTTTGATGACGCG
ATCTGTGCGGGACTGGAATTCGGGTAGTTCTCCTTCGGGTTCTTTTGTGA
AGACACTACAGAATTGTTTCTGCAGGATGTCTGCTTTTTCATGGTCTTCA
TGTCTTAAAGATGAAATGTCATTTGGTGTTTCCAGCAGGGATGAAACCCC
ACTTGCAGATTTTAGTTTACTTCGGACATGTGACCAGAAGATCTTTGGTT
TAATTTTCGACTTGTCACAGATACCTTTCTCGTATGACCTTCGAGCTTGT
GTTATCTTTCGGTTCACTCTGTTCCGTGATGTTACGTAGTTTGTACGGTT
CCTAGCTTTTTCTTCCGGGTCTTTAGACTTTAACCAGAGCCGGTGAAGTT
GTCGTTTTTGTTTTATCTCATTCTGGACCTCTTTTTTGATTGGTATAGCT
CCCTTGAGTTTCCAACTTTGattatcaatatattttattgGAATAAACTG
GCTTCTCAGATCAAGAACTTTTCCTTTAAAGATTGTCCACATATCTGTTA
CTGATTTTCCTCTTAATTCGTTGATCAAATGTTTCGACCATTCTCCATCA
TTCAGGTGTTGTTTCATCTTTGTGTAGTCACTGGTTTCATAACTGTATCT
TTTCGAATTGGGTTTGCGTTGAGTGTAGCAATCAAACGTAAACACCAATA
TGCTATGGTCGCTCTTCCCAAGGGGGATCAGGTACTGAAGATCGCTTACT
TGATTTTGTTCATGAGTAAGTATTAAGTCTATCGTTTAAGGTTCGTCTGT
TCCTCTGCATCGCGTTGGTTCATCAACAAGTTGATAGAAAAACGCGTCTC
TGAGAGCGTCCAAAAACTTTTCTTCCTTACTTTCCTCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTTGTTGACC
TTCTTGAGGCGGAATCCGTTTTTTGAGGAGCCACGGACTCGCCAGATCCC
ACCTGTTTCGCTTTCATTCTTTCTTTTAGCTTCAATTAcaatatttttga
attctttccTTTGATCAGGGGTTAGGTCTTCACAGATACTTATCCCTTTA
TACATATTCACACCCTTCAATATGTGAAGGTTACCGAATATactttcctt
ttcttcttccttgtCAAATGAAACCAGCAATGGGCGTTTCTTGTCGGCTA
CTTTTGCTCCAAGTCTTGTCATATGTTTGATCTTGACCTTAGCATGAAGA
TTTTGGGTGAGTGTTTTCACCCACTCCTCGTCTTTCTTCGGTTGATCATC
AGTGAATTCTTCAACACCGTGAATGATGATGTTTTTTGAACGTTTTAATT
TGTCCTTTTCTTCCGCAGCTTCCTCTTTGTGCACCTCTTTCACGGCTATC
TTTATATCGTCGTTCGAGGAAACAATTTGGCTGTCAGCAACCCAATCTGC
CTATACAATTACCtcaagggaacttattttggcgagaactaattttggcg
aaattggCAAGCGAACTCGAAATTCgcctaatttaattttttttaggtca
ttcgccaaattaagttctcgccatattttaaaaaaatcgttgattcgcca
aaataagttctcgccaaaattaaaatttttgggattttccctaaaataac
ttcttgagttcacaaaaaagcttcaaataaagcaaaatagaacagattta
cgctgtcattcgccaaagcaagttctcgccaaaattaaaaaaaatcgttg
attcaccaaaataagttctggccaatattaaaaaaattcctggttcgcca
aaattagttctctccaaaattaaaaaataatttttaaatcgACCGTTCGT
CAAGATTAGTTCtcaccaaaaaaagtttcctTATTAAGGTTAACTTTTGA
ACCACTCGAATAAATAATTCTTATAATATTTTTACTTCTCTACAAATTCA
CTTGAACAAgctaaattgaagaaaaaaaatctattcaTCTTCGATTCTGT
TCGACTTAATTGATCAAAAAATGTCACAAGATTGGAGCTGTTGAGCCAAA
AAGTGTCAAGGGACAAAATAATCTGTTCGACTTAGCTAactttcgagtta
tggaggctcCAGTGTAGAGGCTTTTTTATTTGAGTTTActagagaaattt
tcaatttgctgacgaatttgttcgagttaggaGACGTTCGAGTAACAGAT
GTTAGAGTTATGGAGACCTCACTTTAGTCGAATTTTCAACGTAAATCGAG
AATTTTGTActtattgacgtcaaatatcatAAAGAAGCCCTGTTTTGACG
TATTCAGCCTTGATTTCCTCAAgggttttgtttgatttgtttaaaTGTAT
CATctaaaatgtcagaaaattcgagaaaattcTCTCCTCAAACGCTTACC
ATCCCAATAGGTTGATTAAACTTCACGAGTTGAATGTGCGATATTTTGTT
Cacttgggcttttccagaaaaaaagttgaatataggggggtggaggatat
aatagTTTTTGGAAATATActcccggacattgtgacttttgactccccgg
acagcaggtctaacccccccCCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNtttcccccccccccccagacaaggcaaattttgt
agatttttcaataCAGTACCCCCGGACACTAAATCCTCCACCCTCTACCG
TTTGTacgtacgaacattttctggaacaGCCCCTTTTAagcaggtaggtc
cataaaaatatcaattgttTATTTACAGAGAAGAAAAAGTCGGAAAATGC
TGCTACcgctaaagaaaataaagcaaaGGAAGACTCGCAACCCGTTGAAA
TCAAACTGTCATCAACAGCGTCTGGTTAGTTCTTTCCTCTTCTACTTTCT
CGATTCCGAGTTAAATTTCTCGGTCCCATTCATTAATGTTGGAACAGTAT
ATATATTCTAAAGGGTCCTgataattttcaaatgaaatcttGCATTATGT
AGATAGGGGAGGTTACGTATAAATAAAGGGTACAGGCCCATTTACTCAAA
ATTAACGGGGTTAGAGTGGAGCATAcgaattttacaaattttatttgacA
AACAAGGTCTAAAATTAGTTAGTGCAACATGTTTTCTGAGTTAAATGAGA
TTGGAGGGGCACGAACTATCATTATACAATTCTTTGACCCCATTCTAAGA
TTTGACCCCAATTGGTGAAACTTTGCGCACCTTGATATACGGAAATCTGA
AACTTCGTCAAAATATTAACTGTAAATCTTCCAGCTAAATCTTTCAAGTA
CGCCTACTTTGTCTTCATTGCAAAAGTAAAAATTACACCTGAGATATTAA
TGAAATCTCAAAATTCTATACTATAAAAGTCCATAAAAGtataaattgtt
tatttttcagaGAAGAAAAAGTCGGAAAATGCTGCTACCgctaaagaaga
aaataaagtaAAGGAAGACTTGCAACCCGTTGAAATCAAACTGGCATCAA
CAGTGTCTGGTTAGCTCTTTCCTCTTCTACCTTCTCCATTCCAAGTTAAA
TTTCTCGGTCCCATTTATTAATTATTGGAACAGTATATATTTTAAGGGGT
CCTGgtgactttcaaataaaattttgcaTTATGTAGATGGGGGAGATTAC
GTATAAATAAAAGGTACATGCCCATCTACTCAAAATTAATGGGGTTGGAT
TGGAACATAcgaattttacaaattttatttgagAAACAAGGTCTAAAATT
AGTTAGTGCAACATATTTCCTGAGTTAAATGAGATCGGAGGGGCACCAAC
TATCATTATGCAATTCTTTGACATGAATATTCTAAGATTTGACCCCAATT
GGTGAAACTTTGTGTACCTTGATGTACGGAAATCTTAAACTTCGTCAAAA
TATTGACTCTAAATCTTTCAAGTACGCCTTCATTGCAAAAGTTAAAATTA
CACCTGAGATATTAATGAAATCTCAAAATTCTATACTATAAAAGTCCATA
AAattataaattgttttttttttttcagagaagAAAAAGTCGGAAAATGC
TGCTACCGCtaaagaaaataaagtaaaGGAAGACTCACCACCCATTGAAA
TCAAACTGTCATCAACAGCGNGATGCTGCTACCGCtaaagaaaataaagt
aaaGGAAGACTCACCACCCGTTGAAATGAAAATGTCATCAACAGCGTCTG
GTTAGTTCTTTCCTATTCTACCTTCTCCATTCCAAGTAAATTCGGTCCCA
TCCCATTCATTAATATTGGAAAAGGAtattttcatgatattcatgacgtt
ttctacggaaataccccggttttagccggtagtggcaaatttaaactaga
caaaagctgtataaaatttgccactactggcaaaaaccggggtcctTCCG
TCATTTCACATTACGTCATGGATATTATGAATTTTGAGGGGTCCTGATAA
TTTTCAAATACAATTGTGCATTAAGTAAACATTTAACAGTGACATCAAAA
TACCCAAACCCGAAACgaattgtcaattttgagaCGCAAGCCGTATTTAG
AACATTTTTCATTAACATTCACAGCCTAATTTCTTGTGAAATACTCTGAT
TGTAAGAGATTTAAAGGCAAGTGATACTATATATAAGTGTCAGACTTCTT
TCAACAGAGACTTCTTCAGGGAAAGAAACTATCCACAAAAGACGTGTACT
ACGATCCGATGAAATGTAAGGGAGGGTTTTAAGGTTTAAAGAACCTtgca
tttactaaaaatagacaaaaagagcGACAAATTTCGGGAATTAACTGCAT
ATAGTTTAAAGAACGTTAAATTACGGATGCGTGTTAAAATGCAtgattct
ttagaggaacagactgtcAACTCTGTAATAAAATACCCACTCAGCAGTTT
ACCCTCAATTTACGGTGACCTCCTGATTCTTGCATAACAGGGCTCTAAAC
TTCAACAGTTTAAAGTCCTCAGCTGAATTTATTTAATGAAGTCTcggtga
aaatgaaagtttgatATGGaattaatatttcaaatttttcttatttttga
acaGGGAAATCTCTATTGAGAACGAAACCACTTCCATCAAAGAAGAATGC
GAAACGCCAGTTACCTTCTTGGATGTTAAATGTTTCTACGGGAGGagatg
caaagaaaaaaacaggTACATATCTAAACCAATCGTATATTATATATTAC
TAGAGTCGGGTGATTTTCCCATGCCTGCTTTAGCTTTTCCTTGAAGCCTT
TCATTGAATTTGAAGCTATCACTCACTGACCCTTATATATCCCTGGagca
agctatatccgccatctttgatcgaagttttttttgaattggtacccgta
aagaagccattgcagtgtgaaaattaacgtctaacggcgctacatcatca
aaagttttcgagggaaagtaaATCTAGCGCACttgatgcatttacaccgc
tattgagtagtgccgccattagggtaccacttttcaaaaaactccgatca
aagattttgcttggccgggattgagaatcttggtccagggtatataaaag
GTCAGTGCTATCACTTCCCTAGGCAATTTGTTCCATGTTAGCTGTAATCG
AACGATTTCGTGTGAACCTCGGAAtccatcattttcaaagttgtgTATAG
TAATTCAGTCTCATGCTGTTTGGACTTGGTCGACGAGCCATCTTCTTGGA
GATCGTGGTCTTCATAGCAGGGGAGATTTTTATACACCTTTACCATACAA
AATTCTCCAATATTGGTAGTTCCAATCTTCGTAGTCTCTTATCATAGGGT
AGACTTCGGTAGACTTATACCTGCCTCGAATCACCTTATACCTTATATAA
AACGCTAGAATCCGCCATAATTGAAAGTAGAAAATATTTCGGTAcaggca
atttttttcaaacaaaacaaacaacctGTGGTCTACTGTGGCTCACTtta
acaaagatggcagattattttgcttcagctaGGGACGAAATGTtccatct
agtgttttatataagatatatgTGGGTTTACAGCATAAGAATTTATTCAA
TCGAAAGATACAGCTCAAAGTTTTacgctgattgactttgaaaaccataa
agaacaacaaaaaaaaGCCCTTTTGCGATCCAACCAGGGAAAGTCTTTAG
GCTGTAATTTTTGActggataaatattttttgcattttagaCTTTAAGAT
TGATGGTTTCCTGATAATAAAATGAAGATCGtagcattattctacaagaa
gttgattttcttcctCTTCACTTTTCCTCTTCATTcttccattatttttt
ttttattttttggatcTACCTCTGAGGTCCTTTAAATGAACCtatcgtcc
gttcgttcgtctgttaccagcttttctcgggattggcccattagtttttt
caatttttttttacaaagatgcatattagcaatgcccaaaatgtggcTGA
Gtccattttttgagaaaaatgccggaaatcgccaattttgtatattttca
ttggactttttccttatatttctttgggtttttttcactcaaaaatatta
ttgataacaatgcccaccatcaaacaTGATTCAACGCTATATTTTTAGAC
TGattgtcttcatttttttcgttattgttatataactttcatcatcaggt
agagGTCCATTGAGCatctaatttatttttttataataattccACTCCAT
AATATCTTTTCAAGGATCACAAAACCGCTAATTAATTCGACCTCTTTACA
GCCtgttttgtctccgctgcagattatattgagaNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctctccc
agatcgaaataatcgatgaaatcaagttgaaggcctgaaattgacattct
cgctcgaacttcaattttcgaaaaatggtaaattagccaaaagtggtaat
atattatggcactgacAGGCACTGATTGTAGGCtgaaaaaaagttgttta
taGTTTCATTCTTTAGTTTTCtttgtttaaagtttaaaggcTGAAgtgtt
tgattttttctgaaccaGACGACGCCAGTCGAACCATCGAACCAAGAAAT
CCCGGTAaagttcgattgtgttcgataaCTGTTCGATGTGTTTGATTTCA
ATTCCATAGAACTCGACCTCTACTCGTTCTCAGGGGCGGCCATAAATGCA
CCATCAGGGTGGGGCAGAAGTAGTTGGCGCCTGTCCCGTAAAACAAACAG
CATTGTTTAAGATCTACAAACCAATAGAACTCTATTTGAACTCTAaacga
acttaatcgaacaatATATTATTATCGGACTAAAATCGAACATTGATTTC
TGGTAAAGTTCAATTACTTttcgatttggttcggtaatcgaacagttatc
gttcaattagttcgatgaaattcgattgttcgattaCGAAAATTGATTCG
ATAACGTTCGGTTGACGTCGTCTGGCCCAAGTTTAGCATTTTATGCTTCC
TTTTATGTTATTGTTCATTTAGTTATTTTGATTAAACAGATAATGAATAC
ACAGTGATTACAGTGTCACAATTGCCAGAGGGCCTTGATTTACATAATTT
CTATTCCGCTTTTACTGGACTTGAATTCATAGGGCTTAAAACCTGTGAAA
CAATAATTTGAAAGAGggcaagaatttttgtcataaaaatgtCCTAACTT
TTGTTGAAATGTCTTAAATTGACATAAATTTTACACccaaaaatgtcata
aaatgtcCTAAAAAAGCATTAAGAGCAGTcataaattcataaaaaaatta
gctAAATCAAGAGTGGGAGACCTGATATTGTTGATCATTTCAACCGGCAG
GTATCAAAAGAGAGCTGAAATCCAAGAAAGCCAACATTTCAACTGAACAA
AATGACATGTCAAAAACTATTGGAGGAGAGAGCTCAAAAGGTCGAAAAAC
AAGTCACGGTTTAAAGTCGCCTGATTTATCGGACGACGAAGTTCTCCCTG
AGAAGAAGACTTTGGCCAATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009887XLOC_009887Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017679-exon-sc0000273-1491911889:223057..223234TCONS_00017679-exon-sc0000273-1491911889:223057..223234Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1510915933:223057..223234TCONS_00017679-exon-sc0000273-1510915933:223057..223234Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1575043694:223057..223234TCONS_00017679-exon-sc0000273-1575043694:223057..223234Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1491911889:224571..224645TCONS_00017679-exon-sc0000273-1491911889:224571..224645Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1510915933:224571..224645TCONS_00017679-exon-sc0000273-1510915933:224571..224645Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1575043694:224571..224645TCONS_00017679-exon-sc0000273-1575043694:224571..224645Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1491911889:228426..228568TCONS_00017679-exon-sc0000273-1491911889:228426..228568Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1510915933:228426..228568TCONS_00017679-exon-sc0000273-1510915933:228426..228568Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1575043694:228426..228568TCONS_00017679-exon-sc0000273-1575043694:228426..228568Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1491911889:229123..229160TCONS_00017679-exon-sc0000273-1491911889:229123..229160Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1510915933:229123..229160TCONS_00017679-exon-sc0000273-1510915933:229123..229160Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1575043694:229123..229160TCONS_00017679-exon-sc0000273-1575043694:229123..229160Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1491911889:235785..235880TCONS_00017679-exon-sc0000273-1491911889:235785..235880Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1510915933:235785..235880TCONS_00017679-exon-sc0000273-1510915933:235785..235880Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1575043694:235785..235880TCONS_00017679-exon-sc0000273-1575043694:235785..235880Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1491911889:237035..237206TCONS_00017679-exon-sc0000273-1491911889:237035..237206Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1510915933:237035..237206TCONS_00017679-exon-sc0000273-1510915933:237035..237206Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1575043694:237035..237206TCONS_00017679-exon-sc0000273-1575043694:237035..237206Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1491911889:238061..238171TCONS_00017679-exon-sc0000273-1491911889:238061..238171Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1510915933:238061..238171TCONS_00017679-exon-sc0000273-1510915933:238061..238171Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1575043694:238061..238171TCONS_00017679-exon-sc0000273-1575043694:238061..238171Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1491911889:241457..241628TCONS_00017679-exon-sc0000273-1491911889:241457..241628Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1510915933:241457..241628TCONS_00017679-exon-sc0000273-1510915933:241457..241628Clytia hemisphaericaexon
TCONS_00017679-exon-sc0000273-1575043694:241457..241628TCONS_00017679-exon-sc0000273-1575043694:241457..241628Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000273supercontigsc0000273:223057..241628 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.00116466	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5.48807e-05	0	0	0	0
Blast
[Close]
BLAST of TCONS_00017679 vs. Swiss-Prot (Human)
Match: APLF (Aprataxin and PNK-like factor OS=Homo sapiens GN=APLF PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.039e-17
Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 2 
Query:  113 DTGETFKVVHGETLIGRGPFLKVTDSKVSRKHAILKYAEDGEISLKPIHKNPTFLYIESTDNWQPLQKDIWHTLQHGSKISLLPNSLKFEVVS 391
            D G    +  GET+IGRGP L +TD +VSR+HAIL+ A  G++ +KPIH NP F          PL+ ++W  L  G   SLL +   F ++S
Sbjct:   11 DGGPRVALAPGETVIGRGPLLGITDKRVSRRHAILEVA-GGQLRIKPIHTNPCFYQSSEKSQLLPLKPNLWCYLNPGDSFSLLVDKYIFRILS 102
The following BLAST results are available for this feature:
BLAST of TCONS_00017679 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
APLF4.039e-1741.94Aprataxin and PNK-like factor OS=Homo sapiens GN=A... [more]
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