TCONS_00017888 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017888
Unique NameTCONS_00017888
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017888 ID=TCONS_00017888|Name=TCONS_00017888|organism=Clytia hemisphaerica|type=transcript|length=361bp
TGAGACGATTGTTAAATTTCTTAAAGCATATTGAATTGCAGGTAAGGCTA
CTGGTTTCCTTTGAATAAAGTTTTCTAAAACTGTTTCAATATCTCTTGGT
AAATCGACAATCCCTGGTGGTCGACCGATATTGCCAGACTGGAGTTTATA
TTTAGTTTCAGGTGTCAGGTTAGCAATGATTGCCATCCACCACGATGCTT
TATTCTTGAAGACGCTTAAAATCTCCGGTGTGGCTGGATCCATTGATTTC
ACAATCACTTTGCAACATATATTCACTTTAGTAAGTAACCCATTTATATA
GCGGTGGGTAAAATTCCTTTCAGGAATAGAGGAGAGGATAGGTGCTGTTA
GTGCATTTTTT
Run BLAST on NCBI

protein sequence of TCONS_00017888-protein

>TCONS_00017888-protein ID=TCONS_00017888-protein|Name=TCONS_00017888-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
KNALTAPILSSIPERNFTHRYINGLLTKVNICCKVIVKSMDPATPEILSV
FKNKASWWMAIIANLTPETKYKLQSGNIGRPPGIVDLPRDIETVLENFIQ
RKPVALPAIQYALRNLTIVS
Run BLAST on NCBI

transcript from alignment at sc0000278:49012..49372

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017888 ID=TCONS_00017888|Name=TCONS_00017888|organism=Clytia hemisphaerica|type=transcript|length=361bp|location=Sequence derived from alignment at sc0000278:49012..49372 (Clytia hemisphaerica)
AAAAAATGCACTAACAGCACCTATCCTCTCCTCTATTCCTGAAAGGAATT
TTACCCACCGCTATATAAATGGGTTACTTACTAAAGTGAATATATGTTGC
AAAGTGATTGTGAAATCAATGGATCCAGCCACACCGGAGATTTTAAGCGT
CTTCAAGAATAAAGCATCGTGGTGGATGGCAATCATTGCTAACCTGACAC
CTGAAACTAAATATAAACTCCAGTCTGGCAATATCGGTCGACCACCAGGG
ATTGTCGATTTACCAAGAGATATTGAAACAGTTTTAGAAAACTTTATTCA
AAGGAAACCAGTAGCCTTACCTGCAATTCAATATGCTTTAAGAAATTTAA
CAATCGTCTCA

Coding sequence (CDS) from alignment at sc0000278:49012..49372

>TCONS_00017888 ID=TCONS_00017888|Name=TCONS_00017888|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0000278:49012..49372 (Clytia hemisphaerica)
AAAAATGCACTAACAGCACCTATCCTCTCCTCTATTCCTGAAAGGAATTT
TACCCACCGCTATATAAATGGGTTACTTACTAAAGTGAATATATGTTGCA
AAGTGATTGTGAAATCAATGGATCCAGCCACACCGGAGATTTTAAGCGTC
TTCAAGAATAAAGCATCGTGGTGGATGGCAATCATTGCTAACCTGACACC
TGAAACTAAATATAAACTCCAGTCTGGCAATATCGGTCGACCACCAGGGA
TTGTCGATTTACCAAGAGATATTGAAACAGTTTTAGAAAACTTTATTCAA
AGGAAACCAGTAGCCTTACCTGCAATTCAATATGCTTTAAGAAATTTAAC
AATCGTCTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010025XLOC_010025Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017888-exon-sc0000278-1491911889:49012..49372TCONS_00017888-exon-sc0000278-1491911889:49012..49372Clytia hemisphaericaexon
TCONS_00017888-exon-sc0000278-1510915933:49012..49372TCONS_00017888-exon-sc0000278-1510915933:49012..49372Clytia hemisphaericaexon
TCONS_00017888-exon-sc0000278-1575043694:49012..49372TCONS_00017888-exon-sc0000278-1575043694:49012..49372Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017888-proteinTCONS_00017888-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000278supercontigsc0000278:49012..49372 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.34338	0.299293	0.29305	0	0	0	0	0	0.345416	0	0	0.929869	0.513975	0	0.647495	1.22385	0.978173	1.35733	0.36342	1.32964	0.547127	0.676288	0	0.604343	1.57031e-08	0	1.28018	0.398033	0	0.526026
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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