TCONS_00017904 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017904
Unique NameTCONS_00017904
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1353

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017904 ID=TCONS_00017904|Name=TCONS_00017904|organism=Clytia hemisphaerica|type=transcript|length=1353bp
gATTCTAGATaatgaattcaaaatataaTATGGCAagtataaagaaaaga
aaatcagaaGTTAATAATGCTGAACCAGCCAGTAAAAAACCAAAGCAATC
TTGGaaagatttTAAATTGTCTGCATCGGATATGGCAATTCTTCATGATC
CAAGTAATCCTACAGCTGATTTTTGGCCAACACGAGAAAAGACAATCACA
TTAGAAGAAGCAAAGCTTGGAACTGATGTGCCTGTTCGTGTTTATGCTGA
TGGAATATATGACATGTTTCATGCTGGTCACGCGAATTCATTACGTCAAG
CCAAAAGTCTTTTTCCAAATACTTATCTTGTTGTAGGGTcctgCAGTGAC
CAAATGACTCACAAATTGAAAGGTTTCACAGTGATGACAGATGAGGAACG
TTATGAGATGATCCGTCACTGTAGATATGTGGACGAACTCATTACTGATG
CACCATGGACTATTACACAAGAGTTCTTAGATAAACACAAGaTTGACTTT
GTGGCACATGATGATTTGCCATATAATTCTGCTGGTCAAGAAGACATCTA
CAAATTTGTTAAAGAAGCTGGTCAATTTGCAGCTACTGAGAGGACACCTG
GTATTTCAACGTCAGATATCATCACAAGAATTGTACGTGATTACGATATG
TATGTTCAAAGAAATCTTCAACGTGGCTATTCAAGACAAGATTTGAATGT
TGGATTTATTAAGGAAAAAGAAATCGTTGTCAAggagaaatataagaaaa
tcaAAGATCGTTCTCAAGAGTTGATCACAAATTGGGAAGATAAATCAAGA
GAAGCTATCATGGGTTTCATTGAAATGTTTGGACCTGATAGTATGATgAC
TGGTTTATGGGAACGAGGGAAGAACAGGCTATCAGTAACCAGCAGAAGAA
TCCGAGAAGCTATTTCACCACCGCGGTCACCTATGGGTGGAGAGGGGACA
TCTTATGATGGACACATCAGTAGTGACGATGAGGATCAAAGTGATATTCC
AAATGGAAGCATTGAAACCTATAATAATCTTGATGGGCTTAGTGATACTG
AAAAATGAGAAACTGGAAGAATGATGTGACTAGTGTTGAACATCATTGAG
AAAATGATTGTAAAAGGGAAGAAAAGTTAATGGTAAGATTCTGGTCTTCA
GTCGTCATAAAATGTTACCCTTTCGTGATttatttgtcaaataaaagCTT
GTTATTTCATCGGGGTGGCTGTTCTacagtaagaatatttttatagaaTT
AGGAAATCTTTTCggtattttttggcatttttcatacttaaaaaaagtaa
ttctataattttgattcaccaaaggtttttcttcaatttttaattgcttt
taa
Run BLAST on NCBI

transcript from alignment at sc0000279:71863..78977+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017904 ID=TCONS_00017904|Name=TCONS_00017904|organism=Clytia hemisphaerica|type=transcript|length=7115bp|location=Sequence derived from alignment at sc0000279:71863..78977+ (Clytia hemisphaerica)
ggtgagtatgacaaatttggaagtcaatcgaattggctgtaagtataagc
agactgGGCCTTTAATtggctttgaaaaatttcaacaagggtagaaattt
ctccaactttcaacaatgatgaacctattaaacaaaattaaccagcACAT
TTTTTATCGTTCTCCTTCTTCATCTacatgaagcactcaaagttgaATAG
ATTTAATTTGTGTTGGTCTGCGGCTTTGGGAAGTAATAATGTTTTCCGtt
gttttctatggaaaatggtaagaaacttaggtttacaagtgtcatttagt
ttttgctagCTGTAAGAATGGCCGGATCCTGGATGGCTTCCCTAACTGCT
GAGTTGgtattgtgtattttacagagcCCACCTAAAGTTGCCCATTTTGC
CTAAATCACCCTTAGGACAGTGTAAGTGGACCTCAATTTTGCAGGATTAC
cattttacaagctttttaacaatttttgccTCGTTAACCCAAATCCTGCA
ACCGCTTTACctgaaattagagtttttcctGCCTAAATTTTTTCGTATTC
ACAGGACTCTACAGGACTCTATTCTTAAccacaaaatacatcttttggtc
tatGGGTGTTTTCTAATGTTCTTCCTTCAAAGAAtgtggtctgtaaaata
caaaccaaagattttgcacactgtcTTGGATGGACAATATCTATCACTGG
TGAAAATATCAAAAGCTCCAGTAGTTTCTAAGCTCTAGTAGCAGGTGGTC
AgcatgtattttacagactggtcTGCAAAGTACCAAATCTCAcggtaaaa
atgtttttctgttACTAACCTgttttatttgacaaatcagcCTTCAGGAA
CAAATTTCAGGCAAATCAAATCAATCAGTCAATATATACATGGTTTTGGT
CaagtttacattctggtctgtaaaatactaacCAGACATGTGGCTGAACC
ACAATTTTGCAACTCATCTTCAATTATCACTATCTACCGCTGattgaaat
ttcaaggtcaatAGCACTTTTTGTCACCCCCTTGCATTCCAGATTCAAAT
TCACTTTAAATTTGTCGCTTTTTTAAAAAGGCAACAAAAATCTTTAGGTA
AGGTATTTAAGATAATATGAAATGCCAGAGACTTGCATTCCACATTCAAT
GgccatgttttgtttttgatttttttataccTTGAATTTTTTCCCTTGTC
ACATCTTATGTGGGTCTGGGCACAAATCTGTGAAAGTCATAAATTAAAAC
CactgcttgaaaaaaaaattgaatatacaaACTGTTAGGGGGAAGCAACT
TTTCGGGCAGTGGAATATATCATCCTACAAAGAAGTTTTAAATGGATAGT
TTTATATACTCAATATATCTTTAAGATTCTAGATaatgaattcaaaatat
aaTATGGCAagtataaagaaaagaaaatcagaaGTTAATAATGCTGAACC
AGCCAGTAAAAAACCAAAGCAATCTTGGGTAAGTTTTTTCTTGATCTACT
GAACATAAAATTCACCATAAAAATGCGCAGAGGGTTTCAAACTCTCGCCC
AACTATATTTTATCCCACTTAAATACATAGCCATTTCTTAACTTGTTAAA
TATTCTAGGACCAAAAGTGCATTTGaactctttttggacctacctccggg
tgccccggtggaggtcctataaattaacccatgtccgttcgttcgtccgt
tcgttcgtccgtccgtccgtctgttaccagNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttaccattttacat
tattcaacacacaagctttatttttccattctgaatttttgtacaattat
tgtcacttttttcttattttcatctaatgttaatcattaggtaggtccat
tcagcatgttgcttgtttattttGCATTGCCTCTAAAAACTCAAACCCAC
ATTTTATTTAGAAAACTCCAACCACTATAAAACCTAACCCTAATATTAAT
AATGCGTTTCTTGAATATCTAGATCCCAATTGTGAATTGATTTGATGTAT
GACAGTAAACAATGTCAGTCTGCAAACAAATCATATAACAGTTTTTCTTG
ACTAGGACTCCTTTAGAGAATTCTAGGTTGATAATTCTGCTGATTCATAA
ATTTTCGAATTAAAGATAATTaatttatatatataatataaacttGGGAA
TTCCGCGTCAAAATAAGGGGTCGGAAGCACATCACACTTCTTCAGTAAGC
GTGGTTCTTGCATCTTGAAATGgacaaattttcaatgtttaGCTTGTAAA
TTATCAAAAAACACATAGTGAATTGCGAAATGTGATacgctaattcgatc
cctgaaggtgttttctgatttctacctctgtttatagaaagatttTAAAT
TGTCTGCATCGGATATGGCAATTCTTCATGATCCAAGTAATCCTACAGCT
GATTTTTGGCCAACACGAGAAAAGACAATCACATTAGAAGAAGCAAAGCT
TGGAACTGATGGTAAAATCTTCTTAAAGATTTAATTTGCAGGAATTAACT
ATGATGTCAACCTGCATATTGCTAAACTCTTAATATGAGTGCCTCATAAA
AGGAAAGAATTTCAATGGCTAGATAACCAAAAGAGCTTTAAGGGGATTGC
GTAGGCATCAGTATGTCTGGTAAAATTAGGATTGGTGGAAATTCTATTTG
GCAGATGGGGAAGacaaattcacaaaattttctttttgaataaagTACCT
TTTGTCAATCCAATCTTATCTCAATATAGAAAGTCGGTTCTTCATGATAA
TTTATTTTCAGCTGCTTAAAATTTCTCGCTGAAACCTTTTATTTTTTAGT
GCCTGTTCGTGTTTATGCTGATGGAATATATGACATGTTTCATGCTGGTC
ACGCGAATTCATTACGTCAAGCCAAAAGTCTTTTTCCAAATACTTATCTT
GTTGTAGGGTGTATGTAGACTTTTATTTCCTttactttgaaatttcgaaC
ATACGATCAAAAGCTTTCCATATTATCAACCAAGAGGCTTTGAAAGCATT
TTATTCAATGTTTTTATGTGAGTTTTTCTTGGAGCAATTTGGCAATTACT
GTAAGTTTCTTGAAATAATTGTGAAACCTGACACTATATCCCTCttggtt
cttatttttttagcctgCAGTGACCAAATGACTCACAAATTGAAAGGTTT
CACAGTGATGACAGATGAGGAACGTTATGAGATGATCCGTCACTGTAGAT
ATGTGGACGAACTCATTACTGATGCACCATGGACTATTACACAAGAGTTC
TTAGATAAACACAAGGTCTGATTTGCCTGTCAGTCGAAATTTTGTGGCAG
GAACAGGCATGAAATACCCTTGAAATGATAACTAACAAATTTTAATTCGC
ACTTTTTTTACAGACCACAATATTTTCAGATGTGCCCCTGCGGTCACCAG
TTATAAATTTGTTATTAGAAATTTCTATGTATCATCCTTATTGAATAAct
tatggaaattttttagaTTGACTTTGTGGCACATGATGATTTGCCATATA
ATTCTGCTGGTCAAGAAGACATCTACAAATTTGTTAAAGAAGCTGGTCAA
TTTGCAGCTACTGAGAGGACACCTGGTATTTCAACGTCAGATATCATCAC
AAGAATTGTACGTGATTACGATATGTATGTTCAAAGAAATCTTCAACGTG
GCTATTCAAGACAAGATTTGAATGTTGGATTTATTAAGGTATTATACTTT
TCTAGCTCTACCAAAGCTCCCCAACATATATTATAGAACCTACCATTGTA
GGCTGTGTTTGTACTTTAGAGAAACGGTTAATGATAATCTGACAAAGTGC
TTGATATTTACTGCTTAAGGAAGAATAAATATTTTCCATCACTAAAGTat
ccaaatttcttttttaaacaaCTTATCTGCTCTATTTAACCTTATTAAAA
GTACATGACAGTACAtaacaaatctcttttttctTGTACATTTTGAACAA
GTGTAGCAGCACGAAACTTTAAAGTTCTGtacttttatagaaaaaaaact
ttctttttttaattttatttataacCTTAGGAAAAAGAAATCGTTGTCAA
ggagaaatataagaaaatcaAAGATCGTTCTCAAGAGTTGATCACAAATT
GGGAAGATAAATCAAGAGAAGCTATCATGGGTTTCATTGAAATGTTTGGA
CCTGATAGTATGATggtatgaaaatttctttgttcttatttcAATCTTTG
ATTGAGGGCTTTTTTGCTTTATTGGTCGCttcttgaaaataatatttcat
atttGTAGTAGTACCAAACTATACTGTGTGGTTATGAATCCCCTAGGTAA
CAAATAATGGAGCCCCAGATACATATATCAACAAaaattaggaatttttt
ttatttagatagGTCGTAGAACTGTTGATTTTCTTTCACTAATTATaaga
ttttgtttctttttttacagACTGGTTTATGGGAACGAGGGAAGAACAGG
CTATCAGTAACCAGCAGAAGAATCCGAGAAGCTATTTCACCACCGCGGTC
ACCTATGGGTGGAGAGGGGACATCTTATGATGGACACATCAGTAGTGACG
ATGAGGATCAAAGTGATATTCCAAATGGAAGCATTGAAACCTATAATAAT
CTTGATGGGCTTAGTGATACTGAAAAATGAGAAAGTAATATTTTTATACA
TCATTATTGTTCAAAGTTTTTTACTTAGTAATGGTGTATTTACCAATGAC
ACAAAAGGAAAGActttttacaaacttttttaaCTTGCACGGTTTGTGAT
GGTTGGTGATGTAGATGTCGTTGTAGATTCAAAGATTTGATTTTTGGatc
tacctggaggtcctataaataaccgtcgttcgttcgttcgttcgttcgtt
cgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcg
ttcgttcgttcgttcggttTTCAGGATCTTTTCCATTAATGTCTAATGTT
CTCTCATTTGGCTAACTTTCATTATCAAGTAGGTCCAATCAGCAGCATCC
AGCTTGTTTAACTAGTTTTGATATGAATTATTCCACCGACCATTTAATGA
TGTGATTATTGAttgtgaaaataattttcatcacTCGCATTGACTAAGTA
ATGTAATGTGACTTCTTTTTCTAGCTGGAAGAATGATGTGACTAGTGTTG
AACATCATTGAGAAAATGATTGTAAAAGGGAAGAAAAGTTAATGGTAAGA
TTCTGGTCTTCAGTCGTCATAAAATGTTACCCTTTCGTGATttatttgtc
aaataaaagCTTGTTATTTCATCGGGGTGGCTGTTCTacagtaagaatat
ttttatagaaTTAGGAAATCTTTTCggtattttttggcatttttcatact
taaaaaaagtaattctataattttgattcaccaaaggtttttcttcaatt
tttaattgcttttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010039XLOC_010039Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017904-exon-sc0000279-1491911889:71863..71863TCONS_00017904-exon-sc0000279-1491911889:71863..71863Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1510915933:71863..71863TCONS_00017904-exon-sc0000279-1510915933:71863..71863Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1575043694:71863..71863TCONS_00017904-exon-sc0000279-1575043694:71863..71863Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1491911889:73238..73340TCONS_00017904-exon-sc0000279-1491911889:73238..73340Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1510915933:73238..73340TCONS_00017904-exon-sc0000279-1510915933:73238..73340Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1575043694:73238..73340TCONS_00017904-exon-sc0000279-1575043694:73238..73340Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1491911889:75900..76023TCONS_00017904-exon-sc0000279-1491911889:75900..76023Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1510915933:75900..76023TCONS_00017904-exon-sc0000279-1510915933:75900..76023Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1575043694:75900..76023TCONS_00017904-exon-sc0000279-1575043694:75900..76023Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1491911889:76362..76472TCONS_00017904-exon-sc0000279-1491911889:76362..76472Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1510915933:76362..76472TCONS_00017904-exon-sc0000279-1510915933:76362..76472Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1575043694:76362..76472TCONS_00017904-exon-sc0000279-1575043694:76362..76472Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1491911889:76676..76827TCONS_00017904-exon-sc0000279-1491911889:76676..76827Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1510915933:76676..76827TCONS_00017904-exon-sc0000279-1510915933:76676..76827Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1575043694:76676..76827TCONS_00017904-exon-sc0000279-1575043694:76676..76827Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1491911889:77029..77250TCONS_00017904-exon-sc0000279-1491911889:77029..77250Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1510915933:77029..77250TCONS_00017904-exon-sc0000279-1510915933:77029..77250Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1575043694:77029..77250TCONS_00017904-exon-sc0000279-1575043694:77029..77250Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1491911889:77593..77727TCONS_00017904-exon-sc0000279-1491911889:77593..77727Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1510915933:77593..77727TCONS_00017904-exon-sc0000279-1510915933:77593..77727Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1575043694:77593..77727TCONS_00017904-exon-sc0000279-1575043694:77593..77727Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1491911889:77983..78196TCONS_00017904-exon-sc0000279-1491911889:77983..78196Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1510915933:77983..78196TCONS_00017904-exon-sc0000279-1510915933:77983..78196Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1575043694:77983..78196TCONS_00017904-exon-sc0000279-1575043694:77983..78196Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1491911889:78687..78977TCONS_00017904-exon-sc0000279-1491911889:78687..78977Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1510915933:78687..78977TCONS_00017904-exon-sc0000279-1510915933:78687..78977Clytia hemisphaericaexon
TCONS_00017904-exon-sc0000279-1575043694:78687..78977TCONS_00017904-exon-sc0000279-1575043694:78687..78977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000279supercontigsc0000279:71863..78977 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.025	9.34465	0.581833	1.34152	0.00947364	0.000230291	0.000364234	3.62147e-09	26.5252	15.7626	28.5287	12.5987	11.2403	20.6483	9.52651	15.6474	0.412137	12.81	0.8169	13.2813	0.227258	21.543	23.2522	29.1914	2.53717e-05	4.85283	28.7885	23.3719	52.7672	31.3114
Blast
[Close]
BLAST of TCONS_00017904 vs. Swiss-Prot (Human)
Match: PCY1B (Choline-phosphate cytidylyltransferase B OS=Homo sapiens GN=PCYT1B PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 1.430e-98
Identity = 152/267 (56.93%), Postives = 195/267 (73.03%), Query Frame = 3 
Query:  195 ITLEEAKLGT--DVPVRVYADGIYDMFHAGHANSLRQAKSLFPNTYLVVGSCSDQMTHKLKGFTVMTDEERYEMIRHCRYVDELITDAPWTITQEFLDKHKIDFVAHDDLPYNSAGQEDIYKFVKEAGQFAATERTPGISTSDIITRIVRDYDMYVQRNLQRGYSRQDLNVGF------------------XXXXXXXXXXXXXXXXDRSQELITNWEDKSREAIMGFIEMFGPDSMMTGLWERGKNRLSVTSRRIREAISPPRSPM 935
            +T+ +A+LGT  D PVRVYADGI+D+FH+GHA +L QAK+LFPN+YL+VG CSD +THK KGFTVM + ERYE +RHCRYVDE+I DAPWT+T EFL+KHKIDFVAHDD+PY+SAG +D+YK +KEAG F  T+RT GISTSDIITRIVRDYD+Y +RNLQRGY+ ++LNV F                  +K  E   KE   +++++S +LI  WE+KSRE I  F+E+FGPD    G W   K      S R+ +A+SP +SP+
Sbjct:   62 LTIAQARLGTPADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPD----GAW---KQMFQERSSRMLQALSPKQSPV 321
The following BLAST results are available for this feature:
BLAST of TCONS_00017904 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCY1B1.430e-9856.93Choline-phosphate cytidylyltransferase B OS=Homo s... [more]
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