TCONS_00017959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017959
Unique NameTCONS_00017959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017959 ID=TCONS_00017959|Name=TCONS_00017959|organism=Clytia hemisphaerica|type=transcript|length=337bp
GCCAGGATGTTGAAGAAGATTGTTTCAATCCATACATTCTCAATATCAAG
TATTGTGAAATCGCTTGGCCTGCTTTTTATCTTCGTTTGTGCTTCAGTGT
TCCTTAATGTTGATTTCCTAAAGACAGTATATTCCAATGTTGATTCTCCG
ACCGCTCCGTCAAAGCTAAGTACTAATATACAAAAAGAGCTGATTCAGCA
TTTATCTTTATCGAAGAAATTATCAGCCCGTTTTGAATCTTTGATAAAGA
GACTTGACAATGATGTTTTGAAAATGCAAAAGATCTTTGGGAATAGAGAT
TCGAATGGTTCAGATTTTGATGGTAATACTGCAGCTG
Run BLAST on NCBI

protein sequence of TCONS_00017959-protein

>TCONS_00017959-protein ID=TCONS_00017959-protein|Name=TCONS_00017959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
ARMLKKIVSIHTFSISSIVKSLGLLFIFVCASVFLNVDFLKTVYSNVDSP
TAPSKLSTNIQKELIQHLSLSKKLSARFESLIKRLDNDVLKMQKIFGNRD
SNGSDFDGNTAA
Run BLAST on NCBI

transcript from alignment at sc0000279:194323..194659

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017959 ID=TCONS_00017959|Name=TCONS_00017959|organism=Clytia hemisphaerica|type=transcript|length=337bp|location=Sequence derived from alignment at sc0000279:194323..194659 (Clytia hemisphaerica)
CAGCTGCAGTATTACCATCAAAATCTGAACCATTCGAATCTCTATTCCCA
AAGATCTTTTGCATTTTCAAAACATCATTGTCAAGTCTCTTTATCAAAGA
TTCAAAACGGGCTGATAATTTCTTCGATAAAGATAAATGCTGAATCAGCT
CTTTTTGTATATTAGTACTTAGCTTTGACGGAGCGGTCGGAGAATCAACA
TTGGAATATACTGTCTTTAGGAAATCAACATTAAGGAACACTGAAGCACA
AACGAAGATAAAAAGCAGGCCAAGCGATTTCACAATACTTGATATTGAGA
ATGTATGGATTGAAACAATCTTCTTCAACATCCTGGC

Coding sequence (CDS) from alignment at sc0000279:194323..194659

>TCONS_00017959 ID=TCONS_00017959|Name=TCONS_00017959|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0000279:194323..194659 (Clytia hemisphaerica)
AGCTGCAGTATTACCATCAAAATCTGAACCATTCGAATCTCTATTCCCAA
AGATCTTTTGCATTTTCAAAACATCATTGTCAAGTCTCTTTATCAAAGAT
TCAAAACGGGCTGATAATTTCTTCGATAAAGATAAATGCTGAATCAGCTC
TTTTTGTATATTAGTACTTAGCTTTGACGGAGCGGTCGGAGAATCAACAT
TGGAATATACTGTCTTTAGGAAATCAACATTAAGGAACACTGAAGCACAA
ACGAAGATAAAAAGCAGGCCAAGCGATTTCACAATACTTGATATTGAGAA
TGTATGGATTGAAACAATCTTCTTCAACATCCTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010071XLOC_010071Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017959-exon-sc0000279-1491911889:194323..194659TCONS_00017959-exon-sc0000279-1491911889:194323..194659Clytia hemisphaericaexon
TCONS_00017959-exon-sc0000279-1510915933:194323..194659TCONS_00017959-exon-sc0000279-1510915933:194323..194659Clytia hemisphaericaexon
TCONS_00017959-exon-sc0000279-1575043694:194323..194659TCONS_00017959-exon-sc0000279-1575043694:194323..194659Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017959-proteinTCONS_00017959-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000279supercontigsc0000279:194323..194659 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.712683	0	0.233563	0.289306	0	0.184592	0.553005	0.382867	0.157384	0	0.208068	0	3.83025	1.23325	1.07192	0	0	1.15568	0.297582	0.265585	0.380051	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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