TCONS_00018133 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018133
Unique NameTCONS_00018133
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018133 ID=TCONS_00018133|Name=TCONS_00018133|organism=Clytia hemisphaerica|type=transcript|length=583bp
TTTTTGTGGCTTGACGAACATTCAATGTGGAAAAAGAAAAGCAATTGGTC
AATGGACCAATAAGATTTAGTTTTTGTGCATAGATGAACATGCGACGTGG
AAAAGGGAAAGGAGTTGGCCAAGGCTCTACACTTAAGCAAACTTCTTAGA
TGGGATTTGGCTTTTGTGGCTTGATGAACATTCAACGTGGAAAAAGAAAC
AGTTGGTCAAGGCTCTACACTTAAGAAAACTTCTTGGATGGccaaaaatt
tgaacaaatctATCATATTGTTGTCAGTCGCACCTTGGAAACAGAAGCTT
TCATCTTCTCAgttggaaaaagttccaccggggctttgaTGTAGCTGCGT
ATGTTTCAAATTCGATACATGGTTTCCATCGATTATGCTGACTGCATGGT
TCGCACAGCAAACGGATTCAAATTAACTTCTATCAGCAACAGACCGGTCA
TAAAAGACCTATTAATTGCACCACTTGGGAATTCACCTTACTGTGAGAAA
AGGTCGCTTGATCTTGacatcaacaaaaacaacatatAAATTATGAATTT
GGATATGTCACGCAAAGTTCATCGCGAATCAAA
Run BLAST on NCBI

transcript from alignment at sc0000290:32817..35434-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018133 ID=TCONS_00018133|Name=TCONS_00018133|organism=Clytia hemisphaerica|type=transcript|length=2618bp|location=Sequence derived from alignment at sc0000290:32817..35434- (Clytia hemisphaerica)
TTTTTGTGGCTTGACGAACATTCAATGTGGAAAAAGAAAAGCAATTGGTC
AATGGACCAATAAGTAAGACTACATTCATATTGGAAGACACTTTTATTTG
CTTTTTGGGCCTACCTAGAGGTACTATAAATTAACCTGTGTTCGTCCGTT
CGTATGAATTTTGTGATTTTTCTGAACAAAACCAGGCTTTTTTTGTTTCG
AGCGTAACACTCTTACTCTTTGGAATTTAGAGAGTTTCAAACCTACTTAC
GCATTAAGCCAACATCTGTGTTTTAAACATTCTTTTACTTGACCCAGTGC
TGAAGTTAAATCTTAGATGAAATCTATATAAATCACAATTTTCAGGATTT
AGTTTTTGTGCATAGATGAACATGCGACGTGGAAAAGGGAAAGGAGTTGG
CCAAGGCTCTACACTTAAGCAAACTTCTTAGATGGGTAAGACTTCATCTT
GAAAGATATTTTATTGAACTTTCATGTTGATATCAATTGCTTTTTCCGAA
CNATCATCTTGAAAGATATTTTATTGAACTTTCATTGATATCAATTGCCT
TTTCTGAACAAAACTAGTCCACCTTTGTTTCGAGCGTAAAACTCTTACTC
TTTGGGATATAGTGAGTTTCAAACCTATGCATTAAAGCCAATCATCTGTG
TTTTAAACATCCTTTTACTTGACCCAGTGCTGAAGTTAAATCTTAAACGA
AATCTATATAAATCACAATTTTCAGGATTTGGCTTTTGTGGCTTGATGAA
CATTCAACGTGGAAAAAGAAACAGTTGGTCAAGGCTCTACACTTAAGAAA
ACTTCTTGGATGGGTAAGACTTCATTCATCATTATTTTTTAATAAAACTA
GGCTACGTCATATTCCCCTTTGTTTCGAACGTAAACTCCTACATACTCTT
CAAAACTAAGGTCTAAAAAACTAGGAGCTGTGTATTGTGTAGACTAGAAC
AAAAACGAAAACGTTGAAAAATATCACCATAACCAGGCTTAAGAAACAGC
ATCGAACAAAATGGATAAACTTAATACCTCGTAAAATGTTCTCATTCCAT
GAAAAAAGTAATAGTAGTTGCAAAACCTTTTAATCAAACCCAGGTAACTT
ACTCTTAGATTTGACAGACGTGATGAATGGTATGCAAAGCAAATTTTGGA
TGACCGGAAGCTAAGAACTTAAAGTAAGAACTTGTTGTTATCTATTTTCA
GCCAAAAATTTGAACAAATCTATCATATTGTTGTCAGTCGCACCTTGGAA
ACAGAAGCTTTCATCTTCTCAGTTGGAAAAAGTTCCACCGGGGCTTTGAT
GTAGCTGCGTATGTTTCAAATTCGATACATGGTAATAAAAAATGCCTATC
AGATTTTGTATAAGGTTTTTCATTCCTGTTGATTCATATAGTTTGACATC
TTTTTATAAGAAACTCAATTTTAGCTTCCGTCCTGCTTTTTCTTAGCTTT
CTAGCTCTATGTTTGAAAAATTTGGTGCGATCACCCCTGACATTATATCA
TTTTTATGTTTATTTGGTTAGGAGCTGTCGTTTGCCATGGTTAGATTTAA
AAAATTCTATTACGAGATGATAAAAAAAAAATGGCTAATTTCAGAGCTCA
AGCCTAAGCAGTCTAGTTGCTTATAAGAAAAAGAAGTGTGTTCTTTCCTG
TCTTTTTCCCTTTTTAATAGAAAGGAAAACACAATGTATCGGACAGTTTT
GGACACATTTAGCAATCAAACTTGTCTACCATTTTGTCTGTGATGATACC
AAAAATAATTTTAGTGTCTTTATTCAGCTTTACTAAAACGGTCTAATTGT
TGTCTTATACTAGGTTTCCATCGATTATGCTGACTGCATGGTTCGCACAG
CAAACGGATTCAAATTAACTTCTATCAGCAACAGACCGGTCATAAAAGAC
CTATTAATTGCACCACTTGGGAATTCACCTTACTGTGAGAAAAGGTAAGG
CAATACTTACATGATTTCACTTTTTATCCGTGATATTCGAGACGTAAGGT
TTTATACGGAAGCACACATTGAACTTTTGAACTCGAAAAGTAAAACTAGT
TGCAAACGTCTGGGCTAGTTTTGAGTGTTTCCGTATAAAACATTACGTCA
TGAATATAATAACTGTTGAGTAATGAGACTTAATAAAACTGACGTTATAA
ATGGGAAATCTCTCGACTAAACCAAAAATGAAATAATTCATCAAAAGCAT
ATTTTCTGTGTGTCAGAAGTTTAATCCCAATTTCACGAGCATTCTTACTA
ATCGTTGTCTAGTGAGGGATTTGCATTTTAGTTGAGAAAAGAAGGTAAAA
TAATTGTCAACAAAACCCATGTCTTTACTCCGAAAGATTCATGATAGGCA
CCGTTGCAATGTCTTCCACGGACTCAACAACTAATTGGTCACAAGTGACC
TATTGATCGATTTTACTTCACGACCAATCAGCTGTCGAGTCTGTGATGTA
ATGTCAAAAGACATTACAACGGCGCATATCATCAAATGTAATTGTTAACA
AATCTTGATCATGATGAAGTATTTCTCTCATTTTCAGGTCGCTTGATCTT
GACATCAACAAAAACAACATATAAATTATGAATTTGGATATGTCACGCAA
AGTTCATCGCGAATCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010181XLOC_010181Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018133-exon-sc0000290-1575043694:35372..35434TCONS_00018133-exon-sc0000290-1575043694:35372..35434Clytia hemisphaericaexon
TCONS_00018133-exon-sc0000290-1575043694:35000..35089TCONS_00018133-exon-sc0000290-1575043694:35000..35089Clytia hemisphaericaexon
TCONS_00018133-exon-sc0000290-1575043694:34622..34709TCONS_00018133-exon-sc0000290-1575043694:34622..34709Clytia hemisphaericaexon
TCONS_00018133-exon-sc0000290-1575043694:34104..34233TCONS_00018133-exon-sc0000290-1575043694:34104..34233Clytia hemisphaericaexon
TCONS_00018133-exon-sc0000290-1575043694:33491..33621TCONS_00018133-exon-sc0000290-1575043694:33491..33621Clytia hemisphaericaexon
TCONS_00018133-exon-sc0000290-1575043694:32817..32897TCONS_00018133-exon-sc0000290-1575043694:32817..32897Clytia hemisphaericaexon
TCONS_00018133-exon-sc0000290-1510915933:35372..35434TCONS_00018133-exon-sc0000290-1510915933:35372..35434Clytia hemisphaericaexon
TCONS_00018133-exon-sc0000290-1510915933:35000..35089TCONS_00018133-exon-sc0000290-1510915933:35000..35089Clytia hemisphaericaexon
TCONS_00018133-exon-sc0000290-1510915933:34622..34709TCONS_00018133-exon-sc0000290-1510915933:34622..34709Clytia hemisphaericaexon
TCONS_00018133-exon-sc0000290-1510915933:34104..34233TCONS_00018133-exon-sc0000290-1510915933:34104..34233Clytia hemisphaericaexon
TCONS_00018133-exon-sc0000290-1510915933:33491..33621TCONS_00018133-exon-sc0000290-1510915933:33491..33621Clytia hemisphaericaexon
TCONS_00018133-exon-sc0000290-1510915933:32817..32897TCONS_00018133-exon-sc0000290-1510915933:32817..32897Clytia hemisphaericaexon
TCONS_00018133-exon-sc0000290-1491911889:35372..35434TCONS_00018133-exon-sc0000290-1491911889:35372..35434Clytia hemisphaericaexon
TCONS_00018133-exon-sc0000290-1491911889:35000..35089TCONS_00018133-exon-sc0000290-1491911889:35000..35089Clytia hemisphaericaexon
TCONS_00018133-exon-sc0000290-1491911889:34622..34709TCONS_00018133-exon-sc0000290-1491911889:34622..34709Clytia hemisphaericaexon
TCONS_00018133-exon-sc0000290-1491911889:34104..34233TCONS_00018133-exon-sc0000290-1491911889:34104..34233Clytia hemisphaericaexon
TCONS_00018133-exon-sc0000290-1491911889:33491..33621TCONS_00018133-exon-sc0000290-1491911889:33491..33621Clytia hemisphaericaexon
TCONS_00018133-exon-sc0000290-1491911889:32817..32897TCONS_00018133-exon-sc0000290-1491911889:32817..32897Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000290supercontigsc0000290:32817..35434 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0277498	0	0	0	0.625634	1.54994	1.49983	1.3882	0.763494	1.1826	0.135716	0	0.48368	0	0	0	0	0	0	0	0	0.0778236	0	0	5.76429e-06
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018133 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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