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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019016 ID=TCONS_00019016|Name=TCONS_00019016|organism=Clytia hemisphaerica|type=transcript|length=1743bp
CAAGGGACTAAATGGTGGTCTCAATACCAAATATGAGGCATCAAGTTAGT
ATCTGGTACTCAAAATCCTGAATAAtaacaaaatttcttattataGGCAG
TCTATATTTACCAGACATATCTCTAATAGTCTACTGGATTGATATTAGAA
GGGCGGCCCAGAAAAGTTTTAAGGGTTGCCCTTATTTCTGGACCCATTTA
TTGAAAACCTAAGGTAAAGCCCAAGagctaatttttttggaaaatttcaa
acttattttaggccaaaaccaaTTATAGAATCTGAAGGCTCTTGAAAAAC
TATGTAGAAGACTTTTAAAAGCAAGTATGGCCGATTTCTTTACTGAACGG
GAGTTATTTGATGAAGAAGTGTTGGtttccccctcattttggtcattttg
gaaTCGCATATGTACTTATGAATATGCCCAGGTTGAGATTGAGGTTGAGA
TTGTTTGGACAAATGAATACAGGTTTATCGAAATTGGATGTTAAATTTTT
TGCCAGTTTctacaataaattttgaataagaTAGTTTNCCAGGTTGAGAT
TGAGGTTGAGATTGTTTGGACAAATGAATACAGGTTTATCGAAATTGGAT
GTTAAATTTTTTGCCAGTTTctacaataaattttgaataagaTAGTTTAG
AGGCTTTAAAAATTCAATGAAGCAATGGTAAGGGGATGAGGTTTTTCAAA
ATGATGGACTATTTAAGGATGTAATTACATGCTTACCACAAATTCAGCTC
AATTCCAATTAGCAATATGTCTGTAAGTAAGGCGTACACAGCTGCAATCT
ACAttcactaaaattttggtaaaaacagtctttttggtggaaaaactcta
gaaaaagtgccctttttgaccAACACCTgacgctgccctgcctttctaaa
atctTGCCTTTTCATTAGCCCCCCCCTCTTTGAAAATTGCTTGGAATGGA
CCCCTCTTCATTCACTCCATTTGCTatacctgggagatcgaatgctgagg
tggagcgccacacctactctcagctcccactAACTTACCGCTTGGATCAG
TTTACCCAATCTGCGCTGAGTTGACGGTGACCAGGGTTCGAACCCACAAA
CCTTAAATTGTAAGACAAATGCTCTACTGACTGAGCTACTCGGCCACTGA
ATAGTTCCTAACTAGTTCtaataatgttcttaaaactAATAACGATTGGT
ACAATATTCATTCATTGTCTTTTTATGTTTGAATAAAACATCATGTAGAA
TGTTGAACAAATCGCCAAAAAGAAATTCCAGCAGACAAACTTTTTTTGCT
GCTCTATTGCCCCTGTGTCACCCCTCGTTGACATCAGCAAGCAACCATTA
TGACCAACCATTAACTCtcttggaaaatttcaaatcacacTATAGCTTGA
ACAAGGTGCTGTCTGAAAGTTGgtgttttttatataatatattttgTAGA
CNCTGAGTTGACGGTGACCAGGGTTCGAACCCACAAACCTTAAATTGTAA
GACAAATGCTCTACTGACTGAGCTACTCGGCCACTGAATAGTTCCTAACT
AGTTCtaataatgttcttaaaactAATAACGATTGGTACAATATTCATTC
ATTGTCTTTTTATGTTTGAATAAAACATCATGTAGAATGTTGAACAAATC
GCCAAAAAGAAATTCCAGCAGACAAACTTTTTTTGTTGCTCTATTGCCCC
TGTGTCACCCCTCGTTGACATCAGCAAGCAACCATTATGACCA Run BLAST on NCBI transcript from alignment at sc0000314:349449..351191 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019016 ID=TCONS_00019016|Name=TCONS_00019016|organism=Clytia hemisphaerica|type=transcript|length=1743bp|location=Sequence derived from alignment at sc0000314:349449..351191 (Clytia hemisphaerica)
TGGTCATAATGGTTGCTTGCTGATGTCAACGAGGGGTGACACAGGGGCAA
TAGAGCAACAAAAAAAGTTTGTCTGCTGGAATTTCTTTTTGGCGATTTGT
TCAACATTCTACATGATGTTTTATTCAAACATAAAAAGACAATGAATGAA
TATTGTACCAATCGTTATTagttttaagaacattattaGAACTAGTTAGG
AACTATTCAGTGGCCGAGTAGCTCAGTCAGTAGAGCATTTGTCTTACAAT
TTAAGGTTTGTGGGTTCGAACCCTGGTCACCGTCAACTCAGNGTCTAcaa
aatatattatataaaaaacacCAACTTTCAGACAGCACCTTGTTCAAGCT
ATAgtgtgatttgaaattttccaagaGAGTTAATGGTTGGTCATAATGGT
TGCTTGCTGATGTCAACGAGGGGTGACACAGGGGCAATAGAGCAGCAAAA
AAAGTTTGTCTGCTGGAATTTCTTTTTGGCGATTTGTTCAACATTCTACA
TGATGTTTTATTCAAACATAAAAAGACAATGAATGAATATTGTACCAATC
GTTATTagttttaagaacattattaGAACTAGTTAGGAACTATTCAGTGG
CCGAGTAGCTCAGTCAGTAGAGCATTTGTCTTACAATTTAAGGTTTGTGG
GTTCGAACCCTGGTCACCGTCAACTCAGCGCAGATTGGGTAAACTGATCC
AAGCGGTAAGTTagtgggagctgagagtaggtgtggcgctccacctcagc
attcgatctcccaggtatAGCAAATGGAGTGAATGAAGAGGGGTCCATTC
CAAGCAATTTTCAAAGAGGGGGGGGCTAATGAAAAGGCAagattttagaa
aggcagggcagcgtcAGGTGTTggtcaaaaagggcactttttctagagtt
tttccaccaaaaagactgtttttaccaaaattttagtgaaTGTAGATTGC
AGCTGTGTACGCCTTACTTACAGACATATTGCTAATTGGAATTGAGCTGA
ATTTGTGGTAAGCATGTAATTACATCCTTAAATAGTCCATCATTTTGAAA
AACCTCATCCCCTTACCATTGCTTCATTGAATTTTTAAAGCCTCTAAACT
AtcttattcaaaatttattgtagAAACTGGCAAAAAATTTAACATCCAAT
TTCGATAAACCTGTATTCATTTGTCCAAACAATCTCAACCTCAATCTCAA
CCTGGNAAACTAtcttattcaaaatttattgtagAAACTGGCAAAAAATT
TAACATCCAATTTCGATAAACCTGTATTCATTTGTCCAAACAATCTCAAC
CTCAATCTCAACCTGGGCATATTCATAAGTACATATGCGAttccaaaatg
accaaaatgagggggaaaCCAACACTTCTTCATCAAATAACTCCCGTTCA
GTAAAGAAATCGGCCATACTTGCTTTTAAAAGTCTTCTACATAGTTTTTC
AAGAGCCTTCAGATTCTATAAttggttttggcctaaaataagtttgaaat
tttccaaaaaaattagctCTTGGGCTTTACCTTAGGTTTTCAATAAATGG
GTCCAGAAATAAGGGCAACCCTTAAAACTTTTCTGGGCCGCCCTTCTAAT
ATCAATCCAGTAGACTATTAGAGATATGTCTGGTAAATATAGACTGCCta
taataagaaattttgttaTTATTCAGGATTTTGAGTACCAGATACTAACT
TGATGCCTCATATTTGGTATTGAGACCACCATTTAGTCCCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019016-exon-sc0000314-1491911889:349449..351191 | TCONS_00019016-exon-sc0000314-1491911889:349449..351191 | Clytia hemisphaerica | exon |
| TCONS_00019016-exon-sc0000314-1510915933:349449..351191 | TCONS_00019016-exon-sc0000314-1510915933:349449..351191 | Clytia hemisphaerica | exon |
| TCONS_00019016-exon-sc0000314-1575043694:349449..351191 | TCONS_00019016-exon-sc0000314-1575043694:349449..351191 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000314 | supercontig | sc0000314:349449..351191 . |
Blast
The following BLAST results are available for this feature:
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