TCONS_00019081 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019081
Unique NameTCONS_00019081
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length593

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019081 ID=TCONS_00019081|Name=TCONS_00019081|organism=Clytia hemisphaerica|type=transcript|length=593bp
gaaaattaataagcgggggagaCATTTATTCGCGACCTTAGAGTAATCCT
TTTCTCTTTCCAGAATGTAAGTAACCAACATTTACCGGCCAATCAATTTC
CATTACATACTTGTTACGGTGATGGTGAAGAAATAACCGACGAAGAGGTG
GATGAAATTCGTTCGGCCACGTGGTCAAATGCAATGTCGTTGAAATTACA
ACCTGGAGATGTTTTATCACTCGATAATCTATTAGCGTTACATTCAAGAA
TGAGCTACGAAGgaggagaaagaaaaatattggttAATCTAAGTTACTAA
GTTACTAGTTTGATTGCAACCGTTCGCGACGACCGCTTTTGCTTTTTAac
ccgtttgtgacgaacggcTTAAAAAGAAAAGCGTTCGTGAAGAACGCTta
cgaaaatttgagaaatgaaACCGTACGCGAAGAGTGCTTTTCCGTTTGCC
gcgaatgcttttaaagaattattcaaaaaaccgttcgtcacaaacggttC
AACATACGCAACGAATGGATTTTAATGGGAAagatttctaagaaaattta
cTTCGCATTAACTTAGATTTAGGGAACAGGGAATGAATTTACT
Run BLAST on NCBI

transcript from alignment at sc0000317:342879..343471

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019081 ID=TCONS_00019081|Name=TCONS_00019081|organism=Clytia hemisphaerica|type=transcript|length=593bp|location=Sequence derived from alignment at sc0000317:342879..343471 (Clytia hemisphaerica)
AGTAAATTCATTCCCTGTTCCCTAAATCTAAGTTAATGCGAAgtaaattt
tcttagaaatctTTCCCATTAAAATCCATTCGTTGCGTATGTTGaaccgt
ttgtgacgaacggttttttgaataattctttaaaagcattcgcGGCAAAC
GGAAAAGCACTCTTCGCGTACGGTttcatttctcaaattttcgtaAGCGT
TCTTCACGAACGCTTTTCTTTTTAAgccgttcgtcacaaacgggtTAAAA
AGCAAAAGCGGTCGTCGCGAACGGTTGCAATCAAACTAGTAACTTAGTAA
CTTAGATTaaccaatatttttctttctcctcCTTCGTAGCTCATTCTTGA
ATGTAACGCTAATAGATTATCGAGTGATAAAACATCTCCAGGTTGTAATT
TCAACGACATTGCATTTGACCACGTGGCCGAACGAATTTCATCCACCTCT
TCGTCGGTTATTTCTTCACCATCACCGTAACAAGTATGTAATGGAAATTG
ATTGGCCGGTAAATGTTGGTTACTTACATTCTGGAAAGAGAAAAGGATTA
CTCTAAGGTCGCGAATAAATGtctcccccgcttattaattttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010696XLOC_010696Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019081-exon-sc0000317-1491911889:342879..343471TCONS_00019081-exon-sc0000317-1491911889:342879..343471Clytia hemisphaericaexon
TCONS_00019081-exon-sc0000317-1510915933:342879..343471TCONS_00019081-exon-sc0000317-1510915933:342879..343471Clytia hemisphaericaexon
TCONS_00019081-exon-sc0000317-1575043694:342879..343471TCONS_00019081-exon-sc0000317-1575043694:342879..343471Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000317supercontigsc0000317:342879..343471 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.18478	0.270284	0.209217	0.409373	0.124593	0.886096	0.370889	0.113834	0.704734	1.56126	0.459358	0.572668	0.626095	0.510518	0.577083	0.223805	0.416141	0.16775	0.698444	0.65513	0.934879	0.776564	0.113771	0.267776	0.230572	0.720962	0.779214	0	0	0.104478
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019081 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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