TCONS_00019141 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019141
Unique NameTCONS_00019141
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length376

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019141 ID=TCONS_00019141|Name=TCONS_00019141|organism=Clytia hemisphaerica|type=transcript|length=376bp
CTCGAGTCGAAAATGGTGATGGCGTTGAGCATGAGTTATTGTTGGTCTTA
ACTAAAGAAAAAGAAGCAAAGTACCAGATTTTTGTGAGTCACATTATGTG
GGTCGGGTAGGTGGTTTAGCTATCAAAACGCCATCATGATGTTATTTGAA
TTtaaatcgatttgtgagtgacccctaaatATTGACGAAACAACGTTAAt
tagagaaagaaagaaagaatatATCAAATCAGTCAAAATCTTTGCAGCTA
CATAACAAAGAAATCAATAAGGAACTATGTGGCTGAAATTCTCTAGAAAA
ATTTAAGACCTCCACACTCCGCCAGCCAGGCCTGGAGCCAAGTTTAGGTT
CCTTATAAACCAGGCGTAGTTtttcg
Run BLAST on NCBI

transcript from alignment at sc0000319:288322..288697

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019141 ID=TCONS_00019141|Name=TCONS_00019141|organism=Clytia hemisphaerica|type=transcript|length=376bp|location=Sequence derived from alignment at sc0000319:288322..288697 (Clytia hemisphaerica)
cgaaaAACTACGCCTGGTTTATAAGGAACCTAAACTTGGCTCCAGGCCTG
GCTGGCGGAGTGTGGAGGTCTTAAATTTTTCTAGAGAATTTCAGCCACAT
AGTTCCTTATTGATTTCTTTGTTATGTAGCTGCAAAGATTTTGACTGATT
TGATatattctttctttctttctctaaTTAACGTTGTTTCGTCAATattt
aggggtcactcacaaatcgatttaAATTCAAATAACATCATGATGGCGTT
TTGATAGCTAAACCACCTACCCGACCCACATAATGTGACTCACAAAAATC
TGGTACTTTGCTTCTTTTTCTTTAGTTAAGACCAACAATAACTCATGCTC
AACGCCATCACCATTTTCGACTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010738XLOC_010738Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019141-exon-sc0000319-1491911889:288322..288697TCONS_00019141-exon-sc0000319-1491911889:288322..288697Clytia hemisphaericaexon
TCONS_00019141-exon-sc0000319-1510915933:288322..288697TCONS_00019141-exon-sc0000319-1510915933:288322..288697Clytia hemisphaericaexon
TCONS_00019141-exon-sc0000319-1575043694:288322..288697TCONS_00019141-exon-sc0000319-1575043694:288322..288697Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000319supercontigsc0000319:288322..288697 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.424883	0.207164	1.20269	0	2.00543	0.452775	1.36564	0.255698	1.43216	0.443491	1.07616	0.848909	0.423865	0.440188	0.965051	0.129456	0	0.490383	0	0.708945	0.410801	0.901685	0	0.221451	0	1.22138	0	0.310883	0.235794	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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