TCONS_00019321 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00019321
Unique Name	TCONS_00019321
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	587

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000325:277616..282415+
coding sequence from alignment at sc0000325:277616..282415+

transcript sequence

>TCONS_00019321 ID=TCONS_00019321|Name=TCONS_00019321|organism=Clytia hemisphaerica|type=transcript|length=587bp
GTGTAATGAATTTGGTTGACAATTGTCCGAAAATTGTGAATATTGATCAA
AAGGATTCGGACAGTGATGGATATGGTGATGTTTGCGATAATTGTCCAGA
TGTGGCAAATCCCAAACAGGAGAATACAGATGGTAACGCTTATGGTGATG
TTTGTAATTCTGGCAACGATAGagATCGTGATGGTATACCAGACGAATAT
GATAATTGTCCACAACATTCTGATACGCAACATCTCGATTCTGATGGTGA
TGGCAAAGGTGATGTTTGTGATGATGACGATGATAATGATGGCGTGAAAG
ACGAAGATGATAATTGTCGTTTGATTTCTAATCAAGATCAAAAGGATATC
GACAAGAACGGTATAGGGGACGTATGCGAAAGAGATTTTGACAAAGATGG
TACCACACATGACGATGTATGTAAAATGAACGGACAAATACAGCATGAAA
TCTTCTCAAGTCACAGTCCTTCCATCATTCTTGGCAATATGGATAAAGAA
TCACATCCTCCACCTGTTTGGACGACTAATGACAAGGGAAGAgaagttat
tcaagaaataaATGCTGCACCGGCAATCCTATTGAGT

Run BLAST on NCBI

protein sequence of TCONS_00019321-protein

>TCONS_00019321-protein ID=TCONS_00019321-protein|Name=TCONS_00019321-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
VMNLVDNCPKIVNIDQKDSDSDGYGDVCDNCPDVANPKQENTDGNAYGDV
CNSGNDRDRDGIPDEYDNCPQHSDTQHLDSDGDGKGDVCDDDDDNDGVKD
EDDNCRLISNQDQKDIDKNGIGDVCERDFDKDGTTHDDVCKMNGQIQHEI
FSSHSPSIILGNMDKESHPPPVWTTNDKGREVIQEINAAPAILLS

Run BLAST on NCBI

transcript from alignment at sc0000325:277616..282415+

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00019321 ID=TCONS_00019321|Name=TCONS_00019321|organism=Clytia hemisphaerica|type=transcript|length=4800bp|location=Sequence derived from alignment at sc0000325:277616..282415+ (Clytia hemisphaerica)
GTGTAATGAATTTGGTTGACAATTGTCCGAAAATTGTGAATATTGATCAA
AAGGATTCGGACAGTGATGGATATGGTGATGTTTGCGATAATTGTCCAGA
TGTGGCAAATCCCAAACAGGTATACAAAACTTCTCCCTATTAGTAGGTCC
TCTATAtcgttttttgagagctttgaGAGCGTTTTTCAATTGGTATTAGT
GCGTTTCGGGTTTCATTGACTTTCAAATCCAAAGAACTAGCTTAACTTTT
GAAACAGGGTAATAAGTCACTCGTTTAAGTACTGTAACTGTGAAGTCTAT
TAACTGAAAGCACGCTTAAACCTTCCACAAGACGTCAGAAAAATGTCCAT
CGATAAACGTTGAGAAAACGTTTGACGAAATTAACTgggaaaaaatgcaa
aaatatacACAGATTTCCCTTTAAGAAGgaacacctccttctcacagacc
cactgggatccctttccactggaaaaattggtcaaaatatcgtccccagt
ggaaaattatactctaatttttgttcccactgaaaataatcaaatatgcA
AATCCTCACTACAAAATATTAGGCTACTTTTTCcttccccactgaatttt
ctgactcgaAAATAATgcaattcaaatccccagctatGAAAACATGGGAG
TATCAAACCCCATCGAGTTTTGATCTgtttttttacccccactggctgaa
aaaaccgGGTCTGTAAGAGGGGGTGTAAAGGACGTTGGACAACtgatttt
tttgtcacttttcaaTAGCGACCTGCGAAttcgataattattttcattgt
gTACTAAATAACGAGTTAGAAAATAGAATAATGCTACTTGGCTGAGGGGT
TGGGTGTTTTGATATTTAATTCGATAAAATCTTGAAACCATTTGCTACAC
AAGCTCTAGTTAAGACATGCACaatgatattttttattcatttttgtcCC
AGGAGAATACAGATGGTAACGCTTATGGTGATGTTTGTAATTCTGGCAAC
GATAGGTAAGGACTGTTCATTTCTCAGGCGTCTTCCTGAAACATGAAAGT
AGGGGTATGCCCGAGCCAACAAGTTTGAAaattgacccttagagagactg
caTATCGAAAATGTTGTCAATGTTTTGACGTCTTTGCCGCCCTTAGAGAG
ACGAGAGactatttccccaaaatttcaggcaatattttcaaattctggta
caattttcaagaaattatgACCTTTTGACGAGGGAaacgatttttgattt
tcgtaattCTTGACACCTTACATAGACTTGATTTGGTTTCTATACCCCTT
TGAGAAACTTTCGAGTgtgtaaaaaagggacccttatggctgaCACAATA
CCTGGCAGTCgtttctccccccccccccccccccccNGTAATTATTTGCA
TCATATCGAGTAAAGTGTCGTACTTACAGTGCcttagcaactgggggggg
caccccaataattttttcaaaaatggtcagtttttctgcaaaatgcaaag
tttttcttttttaatttgttataattgtcacaattgagtgcattttcaag
caatctagagcccaaattttcaaaacaaaattccccctctcaggccaaac
catggttggccctcgcggtgtcactaaacttcagccccccccccaatatg
gaaatgcttcctacggcactgcgtCCATACGCGTGACATAAAACTTTAAG
TATTAGAAATAAATACACCTGTATATCGTTAGTGGTGTGGCTGAGAAACA
TTATTTTGGACAAGGGTATCTAAAAAACAAGCATAGGGACGATCTTGTGA
AAAAAGATCTCCTTATTTGCTACAACAAGAGCTTTAGAATTTTGACGGTG
GAGTTTCCGTTTCTCGAACAGGAAAAACCAGGGTAACTAAAATTTATGTT
AtgaaaaattcgatgaaaaaagATATGAGCGAGTTCGAGGAGACATTCga
tagaggttcgagttgttGAGCTACTGTTAAaggctttgtttttgtttgtt
tactcattaattttaattcataaactttttgattttgaattgagacagat
gtggagcaagattgatcagaaagaggaaaagaaaaacatttttagctGAT
ATCAGCATGGTATAACAAAACAGACACcgttctgatatgaaatatgtgtc
tgatatgaaacgggaacacttatataaaaataaaacctttaattctagtt
tttgacaatttttgaatattttcagagATCGTGATGGTATACCAGACGAA
TATGATAATTGTCCACAACATTCTGATACGCAACATCTCGATTCTGATGG
TGATGGCAAAGGTAAGTAAGGCGTGGTTGATTGAGTGCAATGTTGGTTTA
TAGTTATTGCACCATAGGGATCGCGGAGGattcttaaaatagatttttga
ccACGTTCGCACGTTCACAAGTTATGTTCCGTttcgtcaaaaaagaagac
gttacaaagcaaaacaaattgaaacgatttcgctccactattttcatcgg
aacggaacttcttcgttttcttgctccgaaacgttacGAAATGAAAATGA
ACACTTCCTATCCGTAATAAATACCACACCGAAGAGATACGAAactgtaa
cgtctgaacatgattTTTATCATCTGATTCTAGGTTCATCTTTAAGAGGG
TAATAACAGCAAAAGAATGAGGGGCCATTTATTAATTTGGTTCATTCCTT
GTTAAGATATATCACATTTTGAATATCATCATTCTCCCGGGAAACTTGAT
TTTGTCACTTTTCCAATCATTTTTCCCTCGTCTCACGCGGAAGATTAAAA
GTTCGTAAACTTGCCGCCTGTTTCCAGCAGAAACGCAACATAAATCTCTT
TTAGAGTTGTAGCTTGACTTTTCTTTGCATAGAAACAAAATAAGAATCGT
TCCTATcccttttttaatatttttatttgtgaagtctgcgaccgcagtcg
agggcgacccgaagactcctctttcgatagctatttaCCCGAATGTAGGG
GCCCTAGATTGcttcacttacccttgatccttctcttaattactAAGCAT
CAAGTAGAGAGGCCGGGGgggcaccgtagccggatgctctaccactgcac
tacggtcgctataCTCTTCTTAATTCCAGGTGATGTTTGTGATGATGACG
ATGATAATGATGGCGTGAAAGACGAAGATGATAATTGTCGTTTGATTTCT
AATCAAGATCAAAAGGATATCGACAGTGAGTCAGCTCAtcataaaaatta
taatttaagGCTACCATCAGCATCACCATTTTAATCCAAATAGAAATTAT
TTAAACACCCCCTCTCAGCTGTAAaactgttcaaaatttcctctctAATC
TTCCTATCCCGGGGGGGAGGTACTAGGTACTACCCTTGCCAACCGACGGG
GTTTGCCACTGAGTTTCGAAAAATGGACGCTCTGTTGgactcattttttt
ttatattttaccaaaatttccgacaaaagtgaccctgaattggactgaaa
ttccaaaattttctaaatattttctaCCTCTTTCCCAAACTCCCCCAAAA
AGGTTCGAGGAACTGTGTTTTTTGataccctacctgggactcacgGAGAT
GAAAAAGGTACCCCGACCGGCACATCCCTGTACCCCTTTTTGACCAAGTA
CCCCCGGGACTCCTATAGCTCCTTAGAATATTGGTTAGCCATTAAGAATA
TTATTTCATATTTAAACAATAGAGAACGGTATAGGGGACGTATGCGAAAG
AGATTTTGACAAAGATGGTACCACACATGACGATGTATGTAAAATGAACG
GACAAATACAGCATGAAATCTTCTCAAGTCACAGTCCTTCCATCATTCTT
GGCAATATGGATAAAGAATCACATCCTCCACCTGTTTGGACGACTAATGA
CAAGGTGATATTGGTGATAATTTCTCATAATTGGAACTTTATCGTGGCTT
GGGttacgagatttacgtttgacTACGTTTCGAGAGGTTCTACTCCCATC
ATACATGGTGCAATGTGAGGGATGTTTTCTCCACTATTTGTAATAAGACC
TTCTATCCTCCacattgcccgatgatgggtgagataaaaaaaaagaggct
tctgaaatttttcgaaaattattaaCAGGTTTGGGacgtttttcttaaaa
aaagtagagtactaaaatttgttcatttcattactttttgcttgaaTTCT
GCTCCGCTATCGATATAAATTAAGTCGTGTCAGCACGAGTCAATGAACCC
tggctattttattgaattctGTCATTCTTTAACTCCATCAAGCGAGTAAT
GCACAGTAGCATGGTGGCAGGGGGCAGTGCCCTCCCCCAGCGGCCGATTT
TTTTGGGGGCGCTAAAATACAAAGGGcccctttgctcttttacaccttag
atacggcagttttcggccaaaaaaagagaaaataccaCAAAGTTTTCGTG
CTCGCTTTGTCTGCGTAATCTTTACAAAGATATTTATATTTCATAGGGCG
CGCCAAAATCATAATAttcgacccaccacgctactgataACACAGTATTT
CTGATGATGATAGGGGAAAGAGTAGATTCTTTTCAAGGTTAgacttttaa
ttttcattttttaagaaaagttCTAATTTAAAAACTACGAATCTACCCTT
TCCCCTATCATCATCAATTTCATCTACTGACTATAACGTAAGATACATGG
ATATGATAGGGCAAAAGAATGATATCGTTAATTTATTCGTTTTTTTAAGG
GAAGAgaagttattcaagaaataaATGCTGCACCGGCAATCCTATTGAGT

Coding sequence (CDS) from alignment at sc0000325:277616..282415+

>TCONS_00019321 ID=TCONS_00019321|Name=TCONS_00019321|organism=Clytia hemisphaerica|type=CDS|length=3510bp|location=Sequence derived from alignment at sc0000325:277616..282415+ (Clytia hemisphaerica)
GTAATGAATTTGGTTGACAATTGTCCGAAAATTGTGAATATTGATCAAAA
GGATTCGGACAGTGATGGATATGGTGATGTTTGCGATAATTGTCCAGATG
TGGCAAATCCCAAACAGGAGAATACAGATGGTAACGCTTATGGTGATGTT
TGTAATTCTGGCAACGATAGagATCGTGATGGTATACCAGACGAATATGA
TAATTGTCCACAACATTCTGATACGCAACATCTCGATTCTGATGGTGATG
GCAAAGGTGATGTTTGTGATGATGACGATGATAATGATGGCGTGAAAGAC
GAAGATGATAATTGTCGTTTGATTTCTAATCAAGATCAAAAGGATATCGA
CAAGAACGGTATAGGGGACGTATGCGAAAGAGATTTTGACAAAGATGGTA
CCACACATGACGATGTATGTAAAATGAACGGACAAATACAGCATGAAATC
TTCTCAAGTCACAGTCCTTCCATCATTCTTGGCAATATGGATAAAGAATC
ACATCCTCCACCTGTTTGGACGACTAATGACAAGGGAAGAgaagttattc
aagaaataaATGCTGCACCGGCAATCCTATTGAGTGTAATGAATTTGGTT
GACAATTGTCCGAAAATTGTGAATATTGATCAAAAGGATTCGGACAGTGA
TGGATATGGTGATGTTTGCGATAATTGTCCAGATGTGGCAAATCCCAAAC
AGGAGAATACAGATGGTAACGCTTATGGTGATGTTTGTAATTCTGGCAAC
GATAGagATCGTGATGGTATACCAGACGAATATGATAATTGTCCACAACA
TTCTGATACGCAACATCTCGATTCTGATGGTGATGGCAAAGGTGATGTTT
GTGATGATGACGATGATAATGATGGCGTGAAAGACGAAGATGATAATTGT
CGTTTGATTTCTAATCAAGATCAAAAGGATATCGACAAGAACGGTATAGG
GGACGTATGCGAAAGAGATTTTGACAAAGATGGTACCACACATGACGATG
TATGTAAAATGAACGGACAAATACAGCATGAAATCTTCTCAAGTCACAGT
CCTTCCATCATTCTTGGCAATATGGATAAAGAATCACATCCTCCACCTGT
TTGGACGACTAATGACAAGGGAAGAgaagttattcaagaaataaATGCTG
CACCGGCAATCCTATTGAGTGTAATGAATTTGGTTGACAATTGTCCGAAA
ATTGTGAATATTGATCAAAAGGATTCGGACAGTGATGGATATGGTGATGT
TTGCGATAATTGTCCAGATGTGGCAAATCCCAAACAGGAGAATACAGATG
GTAACGCTTATGGTGATGTTTGTAATTCTGGCAACGATAGagATCGTGAT
GGTATACCAGACGAATATGATAATTGTCCACAACATTCTGATACGCAACA
TCTCGATTCTGATGGTGATGGCAAAGGTGATGTTTGTGATGATGACGATG
ATAATGATGGCGTGAAAGACGAAGATGATAATTGTCGTTTGATTTCTAAT
CAAGATCAAAAGGATATCGACAAGAACGGTATAGGGGACGTATGCGAAAG
AGATTTTGACAAAGATGGTACCACACATGACGATGTATGTAAAATGAACG
GACAAATACAGCATGAAATCTTCTCAAGTCACAGTCCTTCCATCATTCTT
GGCAATATGGATAAAGAATCACATCCTCCACCTGTTTGGACGACTAATGA
CAAGGGAAGAgaagttattcaagaaataaATGCTGCACCGGCAATCCTAT
TGAGTGTAATGAATTTGGTTGACAATTGTCCGAAAATTGTGAATATTGAT
CAAAAGGATTCGGACAGTGATGGATATGGTGATGTTTGCGATAATTGTCC
AGATGTGGCAAATCCCAAACAGGAGAATACAGATGGTAACGCTTATGGTG
ATGTTTGTAATTCTGGCAACGATAGagATCGTGATGGTATACCAGACGAA
TATGATAATTGTCCACAACATTCTGATACGCAACATCTCGATTCTGATGG
TGATGGCAAAGGTGATGTTTGTGATGATGACGATGATAATGATGGCGTGA
AAGACGAAGATGATAATTGTCGTTTGATTTCTAATCAAGATCAAAAGGAT
ATCGACAAGAACGGTATAGGGGACGTATGCGAAAGAGATTTTGACAAAGA
TGGTACCACACATGACGATGTATGTAAAATGAACGGACAAATACAGCATG
AAATCTTCTCAAGTCACAGTCCTTCCATCATTCTTGGCAATATGGATAAA
GAATCACATCCTCCACCTGTTTGGACGACTAATGACAAGGGAAGAgaagt
tattcaagaaataaATGCTGCACCGGCAATCCTATTGAGTGTAATGAATT
TGGTTGACAATTGTCCGAAAATTGTGAATATTGATCAAAAGGATTCGGAC
AGTGATGGATATGGTGATGTTTGCGATAATTGTCCAGATGTGGCAAATCC
CAAACAGGAGAATACAGATGGTAACGCTTATGGTGATGTTTGTAATTCTG
GCAACGATAGagATCGTGATGGTATACCAGACGAATATGATAATTGTCCA
CAACATTCTGATACGCAACATCTCGATTCTGATGGTGATGGCAAAGGTGA
TGTTTGTGATGATGACGATGATAATGATGGCGTGAAAGACGAAGATGATA
ATTGTCGTTTGATTTCTAATCAAGATCAAAAGGATATCGACAAGAACGGT
ATAGGGGACGTATGCGAAAGAGATTTTGACAAAGATGGTACCACACATGA
CGATGTATGTAAAATGAACGGACAAATACAGCATGAAATCTTCTCAAGTC
ACAGTCCTTCCATCATTCTTGGCAATATGGATAAAGAATCACATCCTCCA
CCTGTTTGGACGACTAATGACAAGGGAAGAgaagttattcaagaaataaA
TGCTGCACCGGCAATCCTATTGAGTGTAATGAATTTGGTTGACAATTGTC
CGAAAATTGTGAATATTGATCAAAAGGATTCGGACAGTGATGGATATGGT
GATGTTTGCGATAATTGTCCAGATGTGGCAAATCCCAAACAGGAGAATAC
AGATGGTAACGCTTATGGTGATGTTTGTAATTCTGGCAACGATAGagATC
GTGATGGTATACCAGACGAATATGATAATTGTCCACAACATTCTGATACG
CAACATCTCGATTCTGATGGTGATGGCAAAGGTGATGTTTGTGATGATGA
CGATGATAATGATGGCGTGAAAGACGAAGATGATAATTGTCGTTTGATTT
CTAATCAAGATCAAAAGGATATCGACAAGAACGGTATAGGGGACGTATGC
GAAAGAGATTTTGACAAAGATGGTACCACACATGACGATGTATGTAAAAT
GAACGGACAAATACAGCATGAAATCTTCTCAAGTCACAGTCCTTCCATCA
TTCTTGGCAATATGGATAAAGAATCACATCCTCCACCTGTTTGGACGACT
AATGACAAGGGAAGAgaagttattcaagaaataaATGCTGCACCGGCAAT
CCTATTGAGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010855	XLOC_010855	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00019321-protein	TCONS_00019321-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000325	supercontig	sc0000325:277616..282415 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.187713	0.0915248	0.106269	0	0	0.100018	0	0	0	0.099937	0.380357	0.0625079	0.499368	0.518598	0	0	7.74143	11.6991	0	0.104404	16.8695	13.6771	6.34922	6.71211	11.79	14.9291	0.386088	1.64817	0.729213	0.530681

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR003367	Thrombospondin_3-like_rpt
IPR028974	TSP_type-3_rpt
IPR017897	Thrombospondin_3_rpt

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007155	cell adhesion

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007155	cell adhesion
molecular_function	GO:0005509	calcium ion binding

Blast

[Close]

BLAST of TCONS_00019321 vs. Swiss-Prot (Human)
Match: TSP4 (Thrombospondin-4 OS=Homo sapiens GN=THBS4 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 9.188e-27
Identity = 80/199 (40.20%), Postives = 119/199 (59.80%), Query Frame = 3

Query:    3 VMNLVDNCPKIVNIDQKDSDSDGYGDVCDNCPDVANPKQENTDGNAYGDVCNSGNDRDRDGIPDEYDNCPQHSDTQHLXXXXXXXXXXXXXXXXXXXXXXXXXXX----RLISNQDQKDIDKNGIGDVCERDFDKDGTT-HDDVCKMNGQIQHEIFSSHSPSIILGNMDKESHPPPVWTTNDKGREVIQEINAAPAILL 584
            + N++DNCPK  N DQ+D D DG GD CD+CPDV+NP Q + D +  GD C++  D D DG  D  DNCP   ++  LD+D DG GD CDDDDDNDG+ D         RL+ N  Q+D + +G+GD+CE DFD+D      DVC  N ++    F ++   ++  + + ++   P W   ++G E++Q +N+ P + +
Sbjct:  575 IKNILDNCPKFPNRDQRDKDGDGVGDACDSCPDVSNPNQSDVDNDLVGDSCDTNQDSDGDGHQDSTDNCPTVINSAQLDTDKDGIGDECDDDDDNDGIPDLVPPGPDNCRLVPNPAQEDSNSDGVGDICESDFDQDQVIDRIDVCPENAEVTLTDFRAYQTVVL--DPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAV 771

The following BLAST results are available for this feature:

BLAST of TCONS_00019321 vs. Swiss-Prot (Human)

BLAST of TCONS_00019321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TSP4	9.188e-27	40.20	Thrombospondin-4 OS=Homo sapiens GN=THBS4 PE=1 SV=...	[more]

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TCONS_00019321 (transcript) - C. hemisphaerica