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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019414 ID=TCONS_00019414|Name=TCONS_00019414|organism=Clytia hemisphaerica|type=transcript|length=1974bp
CGTTAAAAGGGGAGGCTTCCAAATGCTGCATCGAATCTCAAGATATCACG
TGTCAAAAACCAAAAACATGCTCTGTAATAAAATCGACTTGTGCTCATTG
CAAATCTGGTTATTATTCAATGGCAACTGGTGAAAAAGCATTTTGTGACA
TGGGAAGTGACGATCAGTTTATACCAAGTTGTAAAACAATCAAAGACGCT
TACCCAGAATCCTCTTCGGGTTTTTATCACCTTGGTTACAAAGATAACAT
CTTGGAATTTTATTGTGATATGACTGCTGATGCagGTGGATGGACAATGG
TAGCCAACATTACAATAACATCAAACGCTGAAGCCGAAAGATATCTTCTA
AGAAATATCAAGCAAAATGGTTTAGGAAGCCTGAAAAATGTGCGATCGGG
AGTATACACTTTATCGCTCGGAACGCTATCTACATTTCAAGAAAGGAATG
AGTTTACGGAAATCCGTATCAAATGCCAAAAGACGTATTTAGGATTTCAA
GTTGACGTTGTTTTGGGTTATGGCTCCGAACTTGTCGGTGGTGTAACACC
GGAACGGCATGTAAATTTATACCGATTCCTCCCGAGTGATTCCCGACACA
CTCAAGTATCGGGCAGTTAtaaaaaagcagattttgcTAATTTATACAAT
CATGCTATTTTCGTTCCTGGTCAATATCATATAGTCATTAATAACGATCC
AAATCGTCGCAGATGGGAGTGTGGTGATTACGACCAGATTCAACCCAACG
GTAAAACCTACTCACCGATCGGATCATGGCAATTTTTTGTTCGATAAAGT
GGAAACTGTTTCACATCGAATTGTGTAAATATAATCAAATTTAATCTAAC
GGTAAAACGTACTCCAGGATCGGAtcaaggcaattttttgttaGATCAAA
CATTGAAAAAGTTGCATAAACTTTTTACGATGAAATATgtaaatataatt
attttttccgCACACATTCAACGTACTCCACGTATAACCAGATTCAATCT
AACAGTAAAACGTACTCCTGGATCGGATCATGGCAATTATTTGTTAGATC
AAACATTAAAGAAGTTGCAGAAACCTTTTATGATGAAATATgtaaatata
attattttttccgCACACAGTAAAACGTACTCCACGTACAATCAGATTCA
ATCTAGCGGTAAAACGTACTCCAGGATCGGATCATGGCAATTATTTGTTA
GATCAAACATTGAAAAAGTTGCATAAACTTTTTACGATGAAATATgtaaa
tataattattttttccgCACACATTCAACGTACTCCACGTATAACCAGAT
TCAATCTAACAGTAAAACGTACTCCTGGATCGGATCATGGCAATTATTTG
TTAGATCAAACATTAAAGAAGTTGCAGAAACCTTTTATGATGAAATATgt
aaatataattattttttccgCACACATTCAAGGTACTCCACGTACAATCG
GATTTAATCTAACGGTGAAATGTACTCTCTGGATCGGATCATGGCAATTA
TTTGTTAGATCAAACAttaaagaagtattttttcCGCACACAGTTTGATG
TACTCCACGTACAATCGGATTTAATCTAACGGTGAAATGTACTCTCAGGA
TCGGATCATGGCAATTATTTGTTAGATCAAACAttaaagaagtatttttt
cCGCACACAGTATGATGTACTCCACGTACAATCGGATTTAATCTAACGGT
AAAACGTACTCCAGGATCGGATCATGGCAATTATTTGTTAGATCAAACAT
TAAAGAAGTTGCAGAAACTTTTTACGATGAAATATgtaaatataattatt
ttttccaCACGCAGTAAAACGTACTCTTgaatgcaattaacgtgcaaaag
agattaacgcaaaggttgattcgaactcgtacaaacacattgATGGTAAT
GATtgtgtgaaaaataaaatatatttttagattcagcatGGTTCGCTATT
TCGAGCTGTGGAGTAAGGTTTTCA Run BLAST on NCBI transcript from alignment at sc0000326:153762..159290- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019414 ID=TCONS_00019414|Name=TCONS_00019414|organism=Clytia hemisphaerica|type=transcript|length=5529bp|location=Sequence derived from alignment at sc0000326:153762..159290- (Clytia hemisphaerica)
CGTTAAAAGGGGAGGCTTCCAAATGCTGCATCGAATCTCAAGATATCACG
TGTCAAAAACGTAAGTATCCCAGCTGACACACAACGTTGTTCCAACGTTT
TTCTAACGCTCACAACGTCCATATAACGTTAAATGAATGTTGAAACAACG
TTGTGTGTCAAAAACGTAAGCATAAGAGATTTTGATCGAATGTGATTAAA
TTTCGAACCATTACCTCCTAGATGAGTGTTTGGTTAAAAGTTTTATTTTT
ACATAAGTGTTCCCGTCGTTTCATATCAGACACATATTTCATATCAGAAC
ATTGTCTGGCTATTTTTATGTTATGTTGATATAAGAAAAAAAATGTTTTT
CTTTCCTCTTTCCTCTTTCTGAAATTCTTAAATTAAAATTTATGAGTAAG
CAAACGATAAGTAGTCTAGTTCAAACCTAGTAACCGTTTTTTAATAATTT
TTCTCATAGCAAAAACATGCTCTGTAATAAAATCGACTTGTGCTCATTGC
AAATCTGGTTATTATTCAATGGCAACTGGTGAAAAAGCATTTTGTGACAT
GGGAAGTAAGAAACTCATCTTTCTTGATGATAAAGTTATATAAAGTAAAA
TGAAATTTCATTCTCAAAAACCTATTCAGTCATCTTGGGAATTAAATATG
TACTCTTAGGTTCCAAATAAACGGGCCCCCCCCCCGCTTGTTAATTTTTC
GAAAATTTTCCAACCCCCCCGGACCTTATTAGGACCCCCCGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCTGTTTATTTGGAACCTAAG
AGTATTGACTCAATAGAGAATTTCAATCTTCTTCCAGTTATAACCAATGT
TCTATAATGATGAGTTTTGAGGGTTTTCTTCATATAAAGATTCTACCACC
TTATTTCATTCGGGAAGATTCACCGCGCCACTATTCCGCCATTATAGTAT
TTTTTCTTACGGGGGCGGACCTCTATTATTTGAACATTTCCGTAAATCGA
ACTAAAACATTATTCCCCTCAGCTGAAAATTGGTATCTATTACTCTCTGT
AATTCGAATCTTTTTCTATCTATTTTTCTATAGTATTTCTGTAATTCGAA
CTAAAACANATCGAACTGAAACATTTTCCCCCTCAGCTGAAAATTGGTAT
CTATTACTCTCTGAAATTCGAATCTTTTTCTATCTATTTTTCTATAGTAT
TTCTGTAAATCGAACTGAAACATTTCCCCCCTCAGCTGAAAATTGGTATC
TATTACTCTCTGAAATTCGAATCTTTTTCTATCTATTTTTCTATAGTATT
TCTGTAATTCGAACTAAAACATTTTTCCCCTCAGCTATGAAAAGTGGTAT
GAATTACCTTCTGTAATTCGAATCTTTCTCTATCTCGAAGAAAACTTGAA
TCAGAAATAGTCAACTATAAAAACAAATAAAATTTTTCATTGTCAAAAAG
GTGACGATCAGTTTATACCAAGTTGTAAAACAATCAAAGACGCTTACCCA
GAATCCTCTTCGGGTTTTTATCACCTTGGTTACAAAGATAACATCTTGGA
ATTTTATTGTGATATGACTGCTGATGCAGGTGAGTTTTTTTTTTTTAACT
TTTTCAAACCAAAATCAAAATTCTATACAGGGTGTACCGAAAAAAAGTAT
CGAATTCGAACATGATTCCGAGAAGAAGGTTGTGTGTGTTGCGTATGTGT
AACAAAATGTCAGAAAATGTATACCAACACAATAATATTTTTGCAACAGT
CATTATAATTGAAAATAATTAACTTTCTTTACAATTTTCATGACGTTAAA
GTTAGTGAGAATTGTTTTTTCGCAAAAGTTATTCATATATATGTCTCATG
ACAATTAATGGCACAGAGAGAAACTTTGATAAACATTCCAAGTTTAATGG
AACACACACAAGAACTTTGTTTACTTCTATTTACCCAGAGAAAATCTGAG
ATTTTGAGAATTTTACGTGGATTTAATNCCCCCCTCAGCTGAAAAGTGGT
ATCTATTACTCTCTGAAATTCGAATCTTTTTCTATCTATTTTTCTATAGT
ATTTCTGTAATTCGAACTAAAACATTTCCCCCCTCAGCTGAAAATTGGTA
TCTATTACTCTCTGTAATTCGAATCTTTTTCTATCTATTTTTCTATAGTA
TTTCTGTAATTCGAACTAAAACATTTTTCCCCTCAGCTATGAAAAGTGGT
ATGAATTACCTTCTGTAATTCGAATCTTTCTCTATCTCGAAGAAAACTTG
AATCAGAAATAGTCAACTATAAAAACAAATAAAATTTTTCATTGTCAAAA
AGGTGACGATCAGTTTATACCAAGTTGTAAAACAATCAAAGACGCTTACC
CAGAATCCTCTTCGGGTTTTTATCACCTTGGTTACAAAGATAACATCTTG
GAATTTTATTGTGATATGACTGCTGATGCAGGTGAGTTTTTTTTTTTTTG
ACTTTTTCAAACCAAAATTAAAATTCTATACAGGGTGTCCCTAATTAAAG
TATCGAGTTTGAACATGCGATTGAGTAGAAAAGTTTGTGTGTGTTATCGC
TAAAATATAAGAACGTTCTCCATCACACAGGCTTATTACAACAGGTAGTT
ACAACGTATAAATTAATTGTAATGACAAAGAAAAAAGAGAGAGAGCTTAA
AATACAATTTTGTGAACACGCACATAAAACTTTCTACTTATAGTTGTGTT
TCGACTCGATACTTTAATTAGGGACACCCTGTACAGGGTGTACCGAAAAA
AAGTATCGAATTCGAACATGATTCCGAGTAGAAGGTTGTGTGAGTTGCGT
ATGTTTAATAAAATGTAAGAAAATGTATACCAACACAATAATATTTTTGC
AACAGCCATTATAATTAAAAATAATTAACTTTCTTTACAATTTTCATGAC
GTTAAAGTTATTGAGAGTTGTTTTTCCGCAAAAGTTATTCATAAATAATG
TCTCATGACAATAGACCTAATCGGAGTTTTTGATTTTTTTTAAAAAGTGA
TGCATTATGGGATTGTTTCGAGTGTATTACAATAGAATTCCCTCGAGGAA
TTCCTAAGAGATTTCTATTGTAATACACTCGAAACAATCCCACGATACAC
CGTTTTTTTAGAAAAATAAAAAACTCCGATAAGATCTAATTAATGGCAGA
GAGAGAAACTTTGATAAACATTTCAAGTTTAATGGAACAGACACAAGAAC
TTTGTTTACTTCTATTTACCCAGAGAAAATTTGACAATTTGAGAATTTTA
CGTGGATTTAATTTCGTAAGTCAATGATCTAACTCAATTGTAATGGCGCA
AATTTACGAAAAACGCGAATATCGACATAAAGAAGGTAAAATTGTTTTAG
GCGAATGAAAGAGAATAAATACGGTCTGCATTTTTTTAAGGTGGATGGAC
AATGGTAGCCAACATTACAATAACATCAAACGCTGAAGCCGAAAGATATC
TTCTAAGAAATATCAAGCAAAATGGTTTAGGAAGCCTGAAAAATGTGCGA
TCGGGAGTATACACTTTATCGCTCGGAACGCTATCTACATTTCAAGAAAG
GAATGAGTTTACGGAAATCCGTATCAAATGCCAAAAGACGTATTTAGGAT
TTCAAGTTGACGTTGTTTTGGGTTATGGCTCCGAACTTGTCGGTGGTGTA
ACACCGGAACGGCATGTAAATTTATACCGATTCCTCCCGAGTGATTCCCG
ACACACTCAAGTATCGGGCAGTTATAAAAAAGCAGATTTTGCTAATTTAT
ACAATCATGCTATTTTCGTTCCTGGTCAATATCATATAGTCATTAATAAC
GATCCAAATCGTCGCAGATGGGAGTGTGGTGATTACGACCAGATTCAACC
CAACGGTAAAACCTACTCACCGATCGGATCATGGCAATTTTTTGTTCGAT
AAAGTGGAAACTGTTTCACATCGAATTGTGTAAATATAATCAAATTTAAT
CTAACGGTAAAACGTACTCCAGGATCGGATCAAGGCAATTTTTTGTTAGA
TCAAACATTGAAAAAGTTGCATAAACTTTTTACGATGAAATATGTAAATA
TAATTATTTTTTCCGCACACATTCAACGTACTCCACGTATAACCAGATTC
AATCTAACAGTAAAACGTACTCCTGGATCGGATCATGGCAATTATTTGTT
AGATCAAACATTAAAGAAGTTGCAGAAACCTTTTATGATGAAATATGTAA
ATATAATTATTTTTTCCGCACACAGTAAAACGTACTCCACGTACAATCAG
ATTCAATCTAGCGGTAAAACGTACTCCAGGATCGGATCATGGCAATTATT
TGTTAGATCAAACATTGAAAAAGTTGCATAAACTTTTTACGATGAAATAT
GTAAATATAATTATTTTTTCCGCACACATTCAACGTACTCCACGTATAAC
CAGATTCAATCTAACAGTAAAACGTACTCCTGGATCGGATCATGGCAATT
ATTTGTTAGATCAAACATTAAAGAAGTTGCAGAAACCTTTTATGATGAAA
TATGTAAATATAATTATTTTTTCCGCACACATTCAAGGTACTCCACGTAC
AATCGGATTTAATCTAACGGTGAAATGTACTCTCTGGATCGGATCATGGC
AATTATTTGTTAGATCAAACATTAAAGAAGTATTTTTTCCGCACACAGTT
TGATGTACTCCACGTACAATCGGATTTAATCTAACGGTGAAATGTACTCT
CAGGATCGGATCATGGCAATTATTTGTTAGATCAAACATTAAAGAAGTAT
TTTTTCCGCACACAGTATGATGTACTCCACGTACAATCGGATTTAATCTA
ACGGTAAAACGTACTCCAGGATCGGATCATGGCAATTATTTGTTAGATCA
AACATTAAAGAAGTTGCAGAAACTTTTTACGATGAAATATGTAAATATAA
TTATTTTTTCCACACGCAGTAAAACGTACTCTTGAATGCAATTAACGTGC
AAAAGAGATTAACGCAAAGGTTGATTCGAACTCGTACAAACACATTGATG
GTAATGATTGTGTGAAAAATAAAATATATTTTTAGATTCAGCATGGTTCG
CTATTTCGAGCTGTGGAGTAAGGTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019414-exon-sc0000326-1575043694:159231..159290 | TCONS_00019414-exon-sc0000326-1575043694:159231..159290 | Clytia hemisphaerica | exon |
| TCONS_00019414-exon-sc0000326-1575043694:158736..158831 | TCONS_00019414-exon-sc0000326-1575043694:158736..158831 | Clytia hemisphaerica | exon |
| TCONS_00019414-exon-sc0000326-1575043694:157262..157390 | TCONS_00019414-exon-sc0000326-1575043694:157262..157390 | Clytia hemisphaerica | exon |
| TCONS_00019414-exon-sc0000326-1575043694:153762..155450 | TCONS_00019414-exon-sc0000326-1575043694:153762..155450 | Clytia hemisphaerica | exon |
| TCONS_00019414-exon-sc0000326-1510915933:159231..159290 | TCONS_00019414-exon-sc0000326-1510915933:159231..159290 | Clytia hemisphaerica | exon |
| TCONS_00019414-exon-sc0000326-1510915933:158736..158831 | TCONS_00019414-exon-sc0000326-1510915933:158736..158831 | Clytia hemisphaerica | exon |
| TCONS_00019414-exon-sc0000326-1510915933:157262..157390 | TCONS_00019414-exon-sc0000326-1510915933:157262..157390 | Clytia hemisphaerica | exon |
| TCONS_00019414-exon-sc0000326-1510915933:153762..155450 | TCONS_00019414-exon-sc0000326-1510915933:153762..155450 | Clytia hemisphaerica | exon |
| TCONS_00019414-exon-sc0000326-1491911889:159231..159290 | TCONS_00019414-exon-sc0000326-1491911889:159231..159290 | Clytia hemisphaerica | exon |
| TCONS_00019414-exon-sc0000326-1491911889:158736..158831 | TCONS_00019414-exon-sc0000326-1491911889:158736..158831 | Clytia hemisphaerica | exon |
| TCONS_00019414-exon-sc0000326-1491911889:157262..157390 | TCONS_00019414-exon-sc0000326-1491911889:157262..157390 | Clytia hemisphaerica | exon |
| TCONS_00019414-exon-sc0000326-1491911889:153762..155450 | TCONS_00019414-exon-sc0000326-1491911889:153762..155450 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000326 | supercontig | sc0000326:153762..159290 - |
Blast
The following BLAST results are available for this feature:
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