TCONS_00019543 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019543
Unique NameTCONS_00019543
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1230

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019543 ID=TCONS_00019543|Name=TCONS_00019543|organism=Clytia hemisphaerica|type=transcript|length=1230bp
GCTTATTAGCATGCAAACAcgaaacttttttaatcgtagggccaGGGTAG
TTATAATAACATACAtcttctgtttttctttatacctatATGTTTGGATT
AAGTACATGTTCATTCGAGATGTTTTTGCAGTGAGAGGAGGACACGcaag
caaacaaacaaacaaggaatggTATCGGACATCAACCGCACTGCTCGCAA
ACACATATCAAACACGATGGAAAGGCGTGAGGTAGACGAACCTTTATGTG
TAGCTATCAACGTTGCTTTGTTGTACGAAGATAACAATTTCATCTTATTG
AACGAGAAAGATTTCGATGAAGCTGTGAAAGGGGTCCAGGAAATAAAGTG
TGATGAGCCACGTAAAAGAGCTTACTCAGCAAACGAAGCATTCACAGAGC
ATCTCGGAGTGCTCTTCTACAAAATCACTGGAAAAGATGAGTTATTGGAT
GCTTATGAGCTTCAACGAGTCATGGACATGGTGTTTGCAAAAGATCTGAA
GCTCTCAGAACACAATGAATTCAGCCTGGAGACATGCCGTTGTTTGATCG
CTTCCATTGACAGAAACCGACGTGGTACGCTCAACTATCATCAATTTAAG
AAGCTTTGGTTCGAAATCATGAAATGGAAGAAACTCTTTGAGGTGTGTGA
CGAAAATAATGACAAGAAGATCGACTATAACGAATTGAAGAAAGCCGTCA
GTAGGCTCGGATTTTCCGTCAAAGAGGAAACCATCCGTATTTTGAAAAGT
CGGTACACAAATCGGGAAGGAGTCCTCGACCTGGATGATTTTTGTGGAAT
TTGTTCCAAGTTAACTACTCTTAGAAATAATTTTGAAGAAATGGAGCTCT
CGGAAAAATGTATGACGTATGATCGATTTTTGATGGAATGTCTGTACTcc
taattttgaaaagaaataattttacttttatGTACATAATTGTTTTcagt
aaatttttgatttttatgaaagtgTTTTCCTATCCGGTTGCAAGATCAAC
GATTCCCGACTTGGTCGCAAAGTTGTGGGTGACTGTTTTCAATACAACGG
ATATTTCttatcttaaatttttttgtagTCTACTTAGGCGTTGAGTATAA
CTGACCATTAGAGGCTAATGCTGATTTAAACGTCTATTCATTTTGTTTCA
GTTCATTTTAATTGGAAACTGTAAATATCTTGAGATTTATCATTCTTTGT
AAATATGATGGAGGAAATAGCAAAATAATG
Run BLAST on NCBI

protein sequence of TCONS_00019543-protein

>TCONS_00019543-protein ID=TCONS_00019543-protein|Name=TCONS_00019543-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MVSDINRTARKHISNTMERREVDEPLCVAINVALLYEDNNFILLNEKDFD
EAVKGVQEIKCDEPRKRAYSANEAFTEHLGVLFYKITGKDELLDAYELQR
VMDMVFAKDLKLSEHNEFSLETCRCLIASIDRNRRGTLNYHQFKKLWFEI
MKWKKLFEVCDENNDKKIDYNELKKAVSRLGFSVKEETIRILKSRYTNRE
GVLDLDDFCGICSKLTTLRNNFEEMELSEKCMTYDRFLMECLYS
Run BLAST on NCBI

transcript from alignment at sc0000329:30308..31537

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019543 ID=TCONS_00019543|Name=TCONS_00019543|organism=Clytia hemisphaerica|type=transcript|length=1230bp|location=Sequence derived from alignment at sc0000329:30308..31537 (Clytia hemisphaerica)
CATTATTTTGCTATTTCCTCCATCATATTTACAAAGAATGATAAATCTCA
AGATATTTACAGTTTCCAATTAAAATGAACTGAAACAAAATGAATAGACG
TTTAAATCAGCATTAGCCTCTAATGGTCAGTTATACTCAACGCCTAAGTA
GActacaaaaaaatttaagataaGAAATATCCGTTGTATTGAAAACAGTC
ACCCACAACTTTGCGACCAAGTCGGGAATCGTTGATCTTGCAACCGGATA
GGAAAAcactttcataaaaatcaaaaatttactgAAAACAATTATGTACa
taaaagtaaaattatttcttttcaaaattaggAGTACAGACATTCCATCA
AAAATCGATCATACGTCATACATTTTTCCGAGAGCTCCATTTCTTCAAAA
TTATTTCTAAGAGTAGTTAACTTGGAACAAATTCCACAAAAATCATCCAG
GTCGAGGACTCCTTCCCGATTTGTGTACCGACTTTTCAAAATACGGATGG
TTTCCTCTTTGACGGAAAATCCGAGCCTACTGACGGCTTTCTTCAATTCG
TTATAGTCGATCTTCTTGTCATTATTTTCGTCACACACCTCAAAGAGTTT
CTTCCATTTCATGATTTCGAACCAAAGCTTCTTAAATTGATGATAGTTGA
GCGTACCACGTCGGTTTCTGTCAATGGAAGCGATCAAACAACGGCATGTC
TCCAGGCTGAATTCATTGTGTTCTGAGAGCTTCAGATCTTTTGCAAACAC
CATGTCCATGACTCGTTGAAGCTCATAAGCATCCAATAACTCATCTTTTC
CAGTGATTTTGTAGAAGAGCACTCCGAGATGCTCTGTGAATGCTTCGTTT
GCTGAGTAAGCTCTTTTACGTGGCTCATCACACTTTATTTCCTGGACCCC
TTTCACAGCTTCATCGAAATCTTTCTCGTTCAATAAGATGAAATTGTTAT
CTTCGTACAACAAAGCAACGTTGATAGCTACACATAAAGGTTCGTCTACC
TCACGCCTTTCCATCGTGTTTGATATGTGTTTGCGAGCAGTGCGGTTGAT
GTCCGATAccattccttgtttgtttgtttgcttgCGTGTCCTCCTCTCAC
TGCAAAAACATCTCGAATGAACATGTACTTAATCCAAACATataggtata
aagaaaaacagaagaTGTATGTTATTATAACTACCCtggccctacgatta
aaaaagtttcgTGTTTGCATGCTAATAAGC

Coding sequence (CDS) from alignment at sc0000329:30308..31537

>TCONS_00019543 ID=TCONS_00019543|Name=TCONS_00019543|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at sc0000329:30308..31537 (Clytia hemisphaerica)
ttaggAGTACAGACATTCCATCAAAAATCGATCATACGTCATACATTTTT
CCGAGAGCTCCATTTCTTCAAAATTATTTCTAAGAGTAGTTAACTTGGAA
CAAATTCCACAAAAATCATCCAGGTCGAGGACTCCTTCCCGATTTGTGTA
CCGACTTTTCAAAATACGGATGGTTTCCTCTTTGACGGAAAATCCGAGCC
TACTGACGGCTTTCTTCAATTCGTTATAGTCGATCTTCTTGTCATTATTT
TCGTCACACACCTCAAAGAGTTTCTTCCATTTCATGATTTCGAACCAAAG
CTTCTTAAATTGATGATAGTTGAGCGTACCACGTCGGTTTCTGTCAATGG
AAGCGATCAAACAACGGCATGTCTCCAGGCTGAATTCATTGTGTTCTGAG
AGCTTCAGATCTTTTGCAAACACCATGTCCATGACTCGTTGAAGCTCATA
AGCATCCAATAACTCATCTTTTCCAGTGATTTTGTAGAAGAGCACTCCGA
GATGCTCTGTGAATGCTTCGTTTGCTGAGTAAGCTCTTTTACGTGGCTCA
TCACACTTTATTTCCTGGACCCCTTTCACAGCTTCATCGAAATCTTTCTC
GTTCAATAAGATGAAATTGTTATCTTCGTACAACAAAGCAACGTTGATAG
CTACACATAAAGGTTCGTCTACCTCACGCCTTTCCATCGTGTTTGATATG
TGTTTGCGAGCAGTGCGGTTGATGTCCGATAccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010985XLOC_010985Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019543-proteinTCONS_00019543-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019543-exon-sc0000329-1491911889:30308..31537TCONS_00019543-exon-sc0000329-1491911889:30308..31537Clytia hemisphaericaexon
TCONS_00019543-exon-sc0000329-1510915933:30308..31537TCONS_00019543-exon-sc0000329-1510915933:30308..31537Clytia hemisphaericaexon
TCONS_00019543-exon-sc0000329-1575043694:30308..31537TCONS_00019543-exon-sc0000329-1575043694:30308..31537Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000329supercontigsc0000329:30308..31537 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.81061	6.84473	7.39658	6.92847	0.843474	0.666524	0.357393	0.292763	0.058563	0.10881	0.0704088	0.11571	14.2125	12.8639	16.9687	12.8106	0.417363	0.962514	26.7431	9.70187	0.0671927	0	3.22715	2.82529	0.335767	0.16648	0.142939	0.610195	1.23416	1.45389
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00019543 vs. Swiss-Prot (Human)
Match: GRAN (Grancalcin OS=Homo sapiens GN=GCA PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.395e-22
Identity = 48/163 (29.45%), Postives = 88/163 (53.99%), Query Frame = 1 
Query:  415 FYKITGKDELLDAYELQRVMDMVFAKDLKLSEHNEFSLETCRCLIASIDRNRRGTLNYHQFKKLWFEIMKWKKLFEVCDENNDKKIDYNELKKAVSRLGFSVKEETIRILKSRYTNREGVLDLDDFCGICSKLTTLRNNF---EEMELSEKCMTYDRFLMECL 894
            F  + G+D  +DA ELQR +     +      ++ FSLETCR +IA +DR+  G + ++ FK+LW  +  WK+ F   D++    ++++EL++A+  +G+ +  +T+  +  RY+ + G +  DD+   C KL  L + F   + ++       YD FL   +
Sbjct:   58 FSAVAGQDGEVDAEELQRCL----TQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYS-KNGRIFFDDYVACCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTM 215
The following BLAST results are available for this feature:
BLAST of TCONS_00019543 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRAN1.395e-2229.45Grancalcin OS=Homo sapiens GN=GCA PE=1 SV=2[more]
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